Rorug03G0205700

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005549
Physical Location & Seq
Reverse (-)
18228956 .. 18233544
4589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0205700.1

Sequence Viewer

Length: 342 bp
ATGTTTTCAGCGAGCATCTTGCTACAGGTTCTGGCTTGTGCATTATACAACAATTGGTGGCCTATGTTGTCTGCTCTCATGTACGTCCTGGTACCGATGCCTTGTCTATTCTTTGGTGGTGGTTCTACTCAGGTTTTATTTACGAGGGAGAGTGATGGGTGGATAAATGCTGCTAAGTTTTTGACTGGGGCATCAACTGTGGGGAGCCTAGCCATTCCTATAATTCTTAGGCACGCTCATATGATTGAGACATCTGCTATGTGGATCGAATTCGTATCATTCTTCATATTTGTGTGCACTGTCATGTGTTTCCATCGTGCCAGCCTCGAAGACGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

113

Amino Acids

12.72

Weight (kDa)

5.38

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps55 PF04133 2 - 109 2.5e-30 Vacuolar protein sorting 55
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 91
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 2 cut(s) 83, 93
AjnI CCWGG 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 242
Alw44I GTGCAC 1 cut(s) 295
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 1 cut(s) 59
ApaLI GTGCAC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 269
Asp718I GGTACC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 157
BccI CCATC 2 cut(s) 149, 321
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 93, 206
BmrFI CCNGG 1 cut(s) 89
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 3 cut(s) 24, 87, 200
BmuI ACTGGG 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 264
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 93, 206
BspPI GGATC 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 190
BssMI GATC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 199, 301
BstC8I GCNNGC 3 cut(s) 13, 234, 322
BstDEI CTNAG 3 cut(s) 129, 174, 227
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 13, 234, 322
CaiI CAGNNNCTG 1 cut(s) 31
Csp6I GTAC 2 cut(s) 82, 92
CviAII CATG 2 cut(s) 79, 304
CviJI RGCY 5 cut(s) 35, 61, 207, 212, 324
CviKI_1 RGCY 5 cut(s) 35, 61, 207, 212, 324
CviQI GTAC 2 cut(s) 82, 92
DdeI CTNAG 3 cut(s) 129, 174, 227
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 82, 307
FaiI YATR 9 cut(s) 46, 65, 80, 221, 240, 242, 260, 287, 305
FatI CATG 2 cut(s) 78, 303
FauNDI CATATG 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 2 cut(s) 82, 307
Hpy166II GTNNAC 1 cut(s) 297
Hpy8I GTNNAC 1 cut(s) 297
HpyCH4III ACNGT 2 cut(s) 199, 301
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 41, 297
HpyF3I CTNAG 3 cut(s) 129, 174, 227
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 82, 307
KpnI GGTACC 1 cut(s) 95
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 7 cut(s) 11, 17, 74, 101, 116, 171, 334
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 3 cut(s) 24, 87, 200
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 2 cut(s) 274, 341
MfeI CAATTG 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 3 cut(s) 52, 222, 269
MnlI CCTC 2 cut(s) 138, 335
MslI CAYNNNNRTG 2 cut(s) 290, 302
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 240
NdeII GATC 1 cut(s) 264
NlaIII CATG 2 cut(s) 82, 307
NlaIV GGNNCC 2 cut(s) 93, 206
PkrI GCNGC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 93, 206
PstNI CAGNNNCTG 1 cut(s) 31
RsaI GTAC 2 cut(s) 83, 93
RsaNI GTAC 2 cut(s) 82, 92
RseI CAYNNNNRTG 2 cut(s) 290, 302
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 299
SetI ASST 3 cut(s) 30, 87, 135
SfaNI GCATC 3 cut(s) 24, 87, 200
SfcI CTRYAG 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 290, 302
Sse9I AATT 3 cut(s) 52, 222, 269
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 199, 301
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 267, 327
TasI AATT 3 cut(s) 52, 222, 269
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 274
TspRI CASTG 1 cut(s) 304
VneI GTGCAC 1 cut(s) 295
XapI RAATTY 1 cut(s) 269
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.