Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005549

Physical Location & Seq

Genomic Coordinates Forward (+)

18235600 .. 18237239

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0205800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTATTGGATGTTTGTCGGCGGCTGTGGGCGCGACGGACGTTCAAGTTTGCAACGTTTGCAGTGGTGGAGATTGATTTAGGGTATGGGAAGGTTAAGGGATGGTGTAGAGATTGTGGACTCTTCGATCATGGAATGCTAGGTTGCGACCAGTTTCTGACAAAACAGCTGACTAATTTGGTGGCTGCTGCAGCGGCGGAGGTTGGTGTCGATGACTCGGTGGTCCAGAAGCAAGGAGTGTCAGTTGTTGCTGTTAGAGTGTCGAAGGTTGCAAACTCTAACTCTGGGAAAGGGTTAGGGCTAAAGTCAGTGTCCCAACGGATCAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

110

Amino Acids

11.97

Weight (kDa)

9.55

Isoelectric Point (pI)

22.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1081700.v1.1
pyrus_communis	pycom12g06770 pycom13g21210 pycom14g06540 pycom14g06560 pycom16g20650
rosa_chinensis	RchiOBHm_Chr3g0483401 RchiOBHm_Chr6g0264021
rosa_laevigata	RLG00000023286
rosa_multiflora	Rmu_sc0006349.1_g000007 Rmu_sc0007793.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031200 Rroxscaffold_4G00300190 Rroxscaffold_4G00318650 Rroxscaffold_6G00398380
rosa_rugosa	Rorug03G0205700 Rorug03G0205800
rosa_samantha	Rh1DG033100 Rh2AG476200 Rh3AG254200 Rh3BG291300 Rh3CG288500 Rh3CG288600 Rh3DG284300 Rh3DG284400
rosa_wichuraiana	Rw0G023730 Rw3G022950 Rw3G022970 Rw6G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AccII	CGCG	1 cut(s)	34
AciI	CCGC	3 cut(s)	22, 194, 197
AclI	AACGTT	1 cut(s)	56
AclWI	GGATC	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
AlwI	GGATC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	157
ApeKI	GCWGC	3 cut(s)	185, 188, 191
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	172, 175, 203
BccI	CCATC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	140, 331
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	5 cut(s)	23, 186, 189, 192, 195
BlsI	GCNGC	5 cut(s)	24, 187, 190, 193, 196
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse1I	ACTGG	1 cut(s)	151
BseGI	GGATG	2 cut(s)	16, 107
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	172, 175, 203
Bsh1236I	CGCG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	127, 321
BspACI	CCGC	3 cut(s)	22, 194, 197
BspFNI	CGCG	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	127, 321
Bst6I	CTCTTC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	16, 107
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	130, 324
BstMBI	GATC	2 cut(s)	127, 321
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 59, 191, 194
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	3 cut(s)	172, 175, 203
BtsCI	GGATG	2 cut(s)	16, 107
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 315
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	223
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	4 cut(s)	25, 169, 185, 301
CviKI_1	RGCY	4 cut(s)	25, 169, 185, 301
DpnI	GATC	2 cut(s)	129, 323
DpnII	GATC	2 cut(s)	127, 321
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	223
FaeI	CATG	1 cut(s)	134
FaiI	YATR	2 cut(s)	87, 132
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	5 cut(s)	23, 186, 189, 192, 195
FokI	GGATG	2 cut(s)	23, 114
Fsp4HI	GCNGC	5 cut(s)	23, 186, 189, 192, 195
FspBI	CTAG	2 cut(s)	140, 331
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	5 cut(s)	23, 186, 189, 192, 195
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	120, 215
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	2 cut(s)	85, 259
HpyCH4IV	ACGT	2 cut(s)	41, 56
HpyCH4V	TGCA	4 cut(s)	53, 62, 191, 272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 59, 191, 194
HpySE526I	ACGT	2 cut(s)	41, 56
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	127, 321
LpnPI	CCDG	3 cut(s)	164, 239, 270
Lsp1109I	GCAGC	3 cut(s)	172, 175, 203
MaeI	CTAG	2 cut(s)	140, 331
MaeII	ACGT	2 cut(s)	41, 56
MalI	GATC	2 cut(s)	129, 323
MboI	GATC	2 cut(s)	127, 321
MboII	GAAGA	1 cut(s)	115
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	114, 209
MnlI	CCTC	1 cut(s)	193
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	2 cut(s)	169, 194
Mva1269I	GAATGC	1 cut(s)	141
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	4 cut(s)	31, 59, 191, 194
NdeII	GATC	2 cut(s)	127, 321
NlaIII	CATG	1 cut(s)	134
PctI	GAATGC	1 cut(s)	141
PkrI	GCNGC	5 cut(s)	24, 187, 190, 193, 196
PleI	GAGTC	2 cut(s)	114, 209
PpsI	GAGTC	2 cut(s)	114, 209
Psp1406I	AACGTT	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	5 cut(s)	23, 186, 189, 192, 195
Sau3AI	GATC	2 cut(s)	127, 321
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	114, 209
SetI	ASST	7 cut(s)	44, 59, 96, 145, 171, 204, 270
SfcI	CTRYAG	1 cut(s)	189
SgeI	CNNG	9 cut(s)	45, 58, 143, 152, 163, 229, 238, 245, 297
SinI	GGWCC	1 cut(s)	223
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	3 cut(s)	22, 194, 197
SspMI	CTAG	2 cut(s)	140, 331
TaiI	ACGT	2 cut(s)	44, 59
TaqI	TCGA	3 cut(s)	126, 210, 263
TasI	AATT	1 cut(s)	175
TauI	GCSGC	2 cut(s)	25, 197
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	69, 315
TseI	GCWGC	3 cut(s)	185, 188, 191
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	2 cut(s)	69, 315
VpaK11BI	GGWCC	1 cut(s)	223
XspI	CTAG	2 cut(s)	140, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.