pycom14g06540

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0005549
Physical Location & Seq
Forward (+)
6476984 .. 6478021
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g06540.3

Sequence Viewer

Length: 615 bp
ATGTATCTCAGGATCGATCCCGTTACAGCGGTGCAACTGCTTTGGGTGAACATGATTATGGACACTCTTGGTGCTTTGGCACTGGCAACAGAGCCTCCAAATGATGGACTTATGAAAAGGCCCCCAGTTGGGAGGGGTACAAGCTTCATCACCAAGGCTATGTGGAGGAATATCATTGGTCAGAGTATCTATCAACTGGCTGTCCTTGGAGTTCTCAATTTCTCGGGGAAGAAGCTACTAGGACTTACTGGTTCAGATGCAACTGAGGTTCTTAACACTGTGATATTCAACGCATTCGTGTTTTGCCAGGTGTTTAATCAGATAAACAGTCGTGACATAGAGAAGATAAACATATTCCGGGGAATGTTTGATAGCTGGATATTCCTAGGCGTCATGGTTTGCACAGCAGTCTTCCAGGCTATCATAGTAGAGTTCTTGGGAGATTTTGCTAGCACTGTACCACTAAGCTGGCAACTATGGTTGCTTTGCATTTTACTTGGATCTGTTAGCATGCCTGTTGCAGTTGTGCTCAAATTAATACCTGTCGAAAGAACAATTAAGCACCATGACGGATATGAAGCACTTCCTTCTGGTCCTCCGGAGGGCATAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

205

Amino Acids

22.5

Weight (kDa)

6.09

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 104
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 1 cut(s) 29
AclWI GGATC 3 cut(s) 11, 20, 508
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 2 cut(s) 139, 459
AfiI CCNNNNNNNGG 4 cut(s) 104, 128, 129, 602
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 2 cut(s) 306, 414
AluBI AGCT 4 cut(s) 144, 235, 375, 468
AluI AGCT 4 cut(s) 144, 235, 375, 468
Alw21I GWGCWC 1 cut(s) 531
AlwI GGATC 3 cut(s) 11, 20, 508
Ama87I CYCGRG 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 1 cut(s) 119
AseI ATTAAT 1 cut(s) 536
Asp700I GAANNNNTTC 1 cut(s) 582
AspA2I CCTAGG 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 120, 593
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 58, 142
AsuNHI GCTAGC 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 223
AvaII GGWCC 1 cut(s) 593
AvrII CCTAGG 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 403
Bbv12I GWGCWC 1 cut(s) 531
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 308, 416
BcnI CCSGG 1 cut(s) 359
BfaI CTAG 3 cut(s) 239, 386, 450
BlnI CCTAGG 1 cut(s) 385
Bme1390I CCNGG 3 cut(s) 308, 359, 416
Bme18I GGWCC 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 120, 593
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 3 cut(s) 308, 359, 416
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 247
BmtI GCTAGC 1 cut(s) 453
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 4 cut(s) 153, 205, 358, 385
BsaWI WCCGGW 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 128, 129, 602
Bse1I ACTGG 4 cut(s) 87, 125, 201, 253
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 2 cut(s) 308, 416
BseCI ATCGAT 1 cut(s) 15
BseDI CCNNGG 4 cut(s) 153, 205, 358, 385
BseLI CCNNNNNNNGG 4 cut(s) 104, 128, 129, 602
BseMII CTCAG 2 cut(s) 22, 255
BseNI ACTGG 4 cut(s) 87, 125, 201, 253
BshFI GGCC 1 cut(s) 121
BshVI ATCGAT 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 2 cut(s) 358, 599
BslI CCNNNNNNNGG 4 cut(s) 104, 128, 129, 602
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 531
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 3 cut(s) 12, 16, 500
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 21, 256
BspDI ATCGAT 1 cut(s) 15
BspEI TCCGGA 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 122
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 3 cut(s) 11, 20, 508
BsrI ACTGG 4 cut(s) 87, 125, 201, 253
BssECI CCNNGG 4 cut(s) 153, 205, 358, 385
BssMI GATC 3 cut(s) 12, 16, 500
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 3 cut(s) 153, 205, 385
Bst2UI CCWGG 2 cut(s) 308, 416
Bst4CI ACNGT 3 cut(s) 280, 329, 457
BstACI GRCGYC 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 451, 470, 512
BstDEI CTNAG 3 cut(s) 8, 264, 464
BstKTI GATC 3 cut(s) 15, 19, 503
BstMBI GATC 3 cut(s) 12, 16, 500
BstNI CCWGG 2 cut(s) 308, 416
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 3 cut(s) 306, 357, 414
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 500
BstXI CCANNNNNNTGG 1 cut(s) 468
BstYI RGATCY 1 cut(s) 500
Bsu15I ATCGAT 1 cut(s) 15
BsuRI GGCC 1 cut(s) 121
BsuTUI ATCGAT 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 80, 276, 453
Cac8I GCNNGC 3 cut(s) 451, 470, 512
Cfr13I GGNCC 2 cut(s) 120, 593
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 1 cut(s) 379
Csp6I GTAC 2 cut(s) 138, 458
CviAII CATG 4 cut(s) 52, 394, 511, 566
CviJI RGCY 9 cut(s) 94, 121, 144, 158, 200, 235, 375, 419, 468
CviKI_1 RGCY 9 cut(s) 94, 121, 144, 158, 200, 235, 375, 419, 468
CviQI GTAC 2 cut(s) 138, 458
DdeI CTNAG 3 cut(s) 8, 264, 464
DpnI GATC 3 cut(s) 14, 18, 502
DpnII GATC 3 cut(s) 12, 16, 500
Eco130I CCWWGG 3 cut(s) 153, 205, 385
Eco47I GGWCC 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 306, 414
EcoT14I CCWWGG 3 cut(s) 153, 205, 385
ErhI CCWWGG 3 cut(s) 153, 205, 385
FaeI CATG 4 cut(s) 55, 397, 514, 569
FatI CATG 4 cut(s) 51, 393, 510, 565
FspBI CTAG 3 cut(s) 239, 386, 450
HaeIII GGCC 1 cut(s) 121
HapII CCGG 2 cut(s) 358, 599
HgaI GACGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 4 cut(s) 55, 397, 514, 569
HindIII AAGCTT 1 cut(s) 142
HpaII CCGG 2 cut(s) 358, 599
HphI GGTGA 2 cut(s) 58, 142
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 183, 256, 321
Hpy188III TCNNGA 3 cut(s) 10, 332, 599
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 597
HpyCH4III ACNGT 3 cut(s) 280, 329, 457
HpyCH4V TGCA 5 cut(s) 34, 260, 402, 489, 521
HpyF3I CTNAG 3 cut(s) 8, 264, 464
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 4 cut(s) 55, 397, 514, 569
Kpn2I TCCGGA 1 cut(s) 598
Kzo9I GATC 3 cut(s) 12, 16, 500
LweI GCATC 1 cut(s) 247
MaeI CTAG 3 cut(s) 239, 386, 450
MaeIII GTNAC 2 cut(s) 22, 332
MalI GATC 3 cut(s) 14, 18, 502
MboI GATC 3 cut(s) 12, 16, 500
MboII GAAGA 3 cut(s) 241, 355, 403
MflI RGATCY 1 cut(s) 500
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 3 cut(s) 217, 533, 555
MnlI CCTC 6 cut(s) 105, 126, 159, 259, 595, 606
MroI TCCGGA 1 cut(s) 598
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 4 cut(s) 273, 315, 536, 558
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 358, 599
MspR9I CCNGG 3 cut(s) 308, 359, 416
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 2 cut(s) 308, 416
NciI CCSGG 1 cut(s) 359
NdeII GATC 3 cut(s) 12, 16, 500
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 4 cut(s) 55, 397, 514, 569
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 1 cut(s) 514
PaeI GCATGC 1 cut(s) 514
PctI GAATGC 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 582
PflMI CCANNNNNTGG 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 306, 414
PspGI CCWGG 2 cut(s) 306, 414
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 120, 593
PsuI RGATCY 1 cut(s) 500
RsaI GTAC 2 cut(s) 139, 459
RsaNI GTAC 2 cut(s) 138, 458
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 4 cut(s) 273, 315, 536, 558
Sau3AI GATC 3 cut(s) 12, 16, 500
Sau96I GGNCC 2 cut(s) 120, 593
ScrFI CCNGG 3 cut(s) 308, 359, 416
SduI GDGCHC 1 cut(s) 531
SetI ASST 7 cut(s) 146, 237, 270, 312, 377, 470, 544
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 56
SphI GCATGC 1 cut(s) 514
Sse9I AATT 3 cut(s) 217, 533, 555
SsiI CCGC 1 cut(s) 29
SspMI CTAG 3 cut(s) 239, 386, 450
StyD4I CCNGG 3 cut(s) 306, 357, 414
StyI CCWWGG 3 cut(s) 153, 205, 385
TaaI ACNGT 3 cut(s) 280, 329, 457
TaqI TCGA 2 cut(s) 15, 546
TasI AATT 3 cut(s) 217, 533, 555
Tru1I TTAA 4 cut(s) 273, 315, 536, 558
Tru9I TTAA 4 cut(s) 273, 315, 536, 558
TscAI CASTG 3 cut(s) 87, 283, 460
TseFI GTSAC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 3 cut(s) 128, 136, 591
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 3 cut(s) 87, 283, 460
Van91I CCANNNNNTGG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 593
VspI ATTAAT 1 cut(s) 536
XceI RCATGY 1 cut(s) 514
XmaJI CCTAGG 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 3 cut(s) 239, 386, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.