Rw0G023730

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01098
Physical Location & Seq
Forward (+)
67517 .. 72401
4885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023730.1

Sequence Viewer

Length: 1254 bp
ATGGAGAACTACTACTTGAAAAAGCACTTGGAAGCTGAGCAGAAGCACCTTTCCGGGGATTCTCGACTTAAATGGAGGAAAGCAGCCGCTCTTCTCCGTTCTAGAAGGTTCCGTGGTGTCGTTGATCTGGCAAACCAGGCCAGGGCTGAGATACAGGGTTTAGTTGAAGTTGCTGTTAAGGTTCTAAGAGCAGCAATACTACAGTTTGACAAAGATGGTGGTGATTATAATCCAGATAAAGAGAAACCAGTTCAAGATGAATACAAGCCTGAAGAGACATTAGAAGGTTTCAGCACTCACCAAGATGAGCTTGCATCTATCAAACGTGACCATGATATCAGGTCAGGTCAAAATTTGGTGGCAGACAGTGAACTTGCTATGGGCATGGCAGGAACCCAGGTTGCCAAAGAAGGTTCTGATGTTATCAAATTGGATGACAATTTTAGAACTGCAGGAAGTGTGGCCATATGGAGTCGTCCATACATAAACATCCAAAAGTTTATGCGGTTCCAGTTAGCAATTAACGTTGTTGCTCTGGTGATCAATGCTGTTTCTGTATATGTTTCAGGAAACGTTCCCCTTACTGCTGTGCAATTGCTTTGGGTCAACCTGATTATGTACACTGTTGGTGCACGCGCACTTATACGAATGCCCCAGTTTTTGAAGGGTGCAAGCTTCATCACCGGGGGCATTTGGAGGAATATCATTGGTCAGAGTATCTATCAACTGACTGTCCTTGGAGTTCTCAATTTCTATGGGACGCAGCTACTAGGACTTACTAGTCCAGATGCAATTGCTGTTCTTGACACTGTGATATTCAACTCAATAGTGTTTTGCAAGGTGATTAATGAGATGATTCAGATGAATAGGCATGAAATAGAGATGATAAACACATTTGACAACTGGATATTGGTAGGAATCATGATTTGCACTTTGGCCTTCGAAGTTGTCATAGTTGAGTTCTTGGGAGTGGTTGCTAGCATTGTGCCACTATGGGGACTTACCATTTTTATTGGATCAGTTAGCATGACTGTTGCAGTTGTCCTGGAGTGCATGCCTGTTGGAAACTCAGCCAAAGGGACTGGTGATGGCTTGGCCACAGAAGGACTGGAAATTCATAGATTCTCCGCTGAGCAGCTGAATGCTGTTATGAAGTTGGTCCAGGTCAAGTTATGTGTGTATGAAATACAAGTATATGTATGCAATAGGAAAAATTCCAAGTCGCTTTTCATGGTCCAAAAACAGCACTACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

417

Amino Acids

46.47

Weight (kDa)

7.05

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_C PF00689 192 - 346 2.5e-13 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AasI GACNNNNNNGTC 1 cut(s) 780
AccBSI CCGCTC 1 cut(s) 89
AccII CGCG 1 cut(s) 636
AciI CCGC 3 cut(s) 87, 505, 1128
AclI AACGTT 2 cut(s) 525, 573
AclWI GGATC 1 cut(s) 1024
AcoI YGGCCR 2 cut(s) 462, 1095
AcsI RAATTY 3 cut(s) 352, 1113, 1213
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 3 cut(s) 55, 142, 995
AgsI TTSAA 5 cut(s) 19, 167, 254, 664, 820
AhlI ACTAGT 1 cut(s) 779
AjnI CCWGG 5 cut(s) 135, 140, 396, 1044, 1161
AjuI GAANNNNNNNTTGG 4 cut(s) 11, 43, 1211, 1243
AluBI AGCT 5 cut(s) 35, 310, 675, 766, 1138
AluI AGCT 5 cut(s) 35, 310, 675, 766, 1138
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 1 cut(s) 269
Alw44I GTGCAC 1 cut(s) 630
AlwI GGATC 1 cut(s) 1024
AoxI GGCC 4 cut(s) 138, 462, 936, 1095
ApaLI GTGCAC 1 cut(s) 630
ApeKI GCWGC 4 cut(s) 83, 191, 763, 1135
ApoI RAATTY 3 cut(s) 352, 1113, 1213
AseI ATTAAT 1 cut(s) 846
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 2 cut(s) 1159, 1234
AsuC2I CCSGG 2 cut(s) 55, 685
AsuHPI GGTGA 6 cut(s) 233, 290, 550, 673, 853, 1097
AsuII TTCGAA 1 cut(s) 942
AsuNHI GCTAGC 1 cut(s) 977
AvaII GGWCC 2 cut(s) 1159, 1234
BaeGI GKGCMC 1 cut(s) 634
BalI TGGCCA 2 cut(s) 464, 1097
Bbv12I GWGCWC 1 cut(s) 634
BbvI GCAGC 4 cut(s) 95, 203, 775, 1147
BccI CCATC 2 cut(s) 209, 1082
BciT130I CCWGG 5 cut(s) 137, 142, 398, 1046, 1163
BclI TGATCA 1 cut(s) 540
BcnI CCSGG 2 cut(s) 55, 685
BcoDI GTCTC 1 cut(s) 269
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 4 cut(s) 102, 770, 780, 978
BfmI CTRYAG 2 cut(s) 200, 450
BisI GCNGC 5 cut(s) 84, 87, 192, 764, 1136
BlpI GCTNAGC 2 cut(s) 36, 1131
BlsI GCNGC 5 cut(s) 85, 88, 193, 765, 1137
Bme1390I CCNGG 7 cut(s) 55, 137, 142, 398, 685, 1046, 1163
Bme18I GGWCC 2 cut(s) 1159, 1234
BmgT120I GGNCC 2 cut(s) 1159, 1234
BmiI GGNNCC 3 cut(s) 110, 394, 509
BmrFI CCNGG 7 cut(s) 55, 137, 142, 398, 685, 1046, 1163
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 2 cut(s) 323, 778
BmtI GCTAGC 1 cut(s) 981
BmuI ACTGGG 1 cut(s) 649
BpmI CTGGAG 1 cut(s) 1067
Bpu1102I GCTNAGC 2 cut(s) 36, 1131
Bpu14I TTCGAA 1 cut(s) 942
BpuMI CCSGG 2 cut(s) 55, 685
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 6 cut(s) 54, 112, 141, 396, 684, 736
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 142, 995
Bse1I ACTGG 6 cut(s) 248, 511, 655, 908, 1087, 1113
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 5 cut(s) 137, 142, 398, 1046, 1163
BseDI CCNNGG 6 cut(s) 54, 112, 141, 396, 684, 736
BseGI GGATG 2 cut(s) 439, 489
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 55, 142, 995
BseMII CTCAG 4 cut(s) 27, 138, 1083, 1122
BseNI ACTGG 6 cut(s) 248, 511, 655, 908, 1087, 1113
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 4 cut(s) 95, 203, 775, 1147
Bsh1236I CGCG 1 cut(s) 636
BshFI GGCC 4 cut(s) 140, 464, 938, 1097
BsiHKAI GWGCWC 1 cut(s) 634
BsiSI CCGG 2 cut(s) 54, 684
BslFI GGGAC 3 cut(s) 772, 1011, 1093
BslI CCNNNNNNNGG 3 cut(s) 55, 142, 995
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 3 cut(s) 772, 1011, 1093
BsmI GAATGC 2 cut(s) 654, 1147
BsnI GGCC 4 cut(s) 140, 464, 938, 1097
Bsp119I TTCGAA 1 cut(s) 942
Bsp1286I GDGCHC 1 cut(s) 634
Bsp1407I TGTACA 1 cut(s) 618
Bsp143I GATC 3 cut(s) 124, 540, 1016
Bsp1720I GCTNAGC 2 cut(s) 36, 1131
BspACI CCGC 3 cut(s) 87, 505, 1128
BspANI GGCC 4 cut(s) 140, 464, 938, 1097
BspCNI CTCAG 4 cut(s) 28, 139, 1082, 1123
BspFNI CGCG 1 cut(s) 636
BspHI TCATGA 1 cut(s) 921
BspLI GGNNCC 3 cut(s) 110, 394, 509
BspMAI CTGCAG 1 cut(s) 454
BspOI GCTAGC 1 cut(s) 981
BspPI GGATC 1 cut(s) 1024
BspQI GCTCTTC 1 cut(s) 96
BspT104I TTCGAA 1 cut(s) 942
BsrBI CCGCTC 1 cut(s) 89
BsrGI TGTACA 1 cut(s) 618
BsrI ACTGG 6 cut(s) 248, 511, 655, 908, 1087, 1113
BssECI CCNNGG 6 cut(s) 54, 112, 141, 396, 684, 736
BssMI GATC 3 cut(s) 124, 540, 1016
BssT1I CCWWGG 1 cut(s) 736
Bst2UI CCWGG 5 cut(s) 137, 142, 398, 1046, 1163
Bst4CI ACNGT 6 cut(s) 204, 368, 625, 733, 811, 1033
Bst6I CTCTTC 2 cut(s) 96, 267
BstAUI TGTACA 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 942
BstC8I GCNNGC 5 cut(s) 312, 634, 673, 979, 1055
BstDEI CTNAG 5 cut(s) 36, 147, 185, 1069, 1131
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 2 cut(s) 439, 489
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 3 cut(s) 127, 543, 1019
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 3 cut(s) 124, 540, 1016
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 5 cut(s) 137, 142, 398, 1046, 1163
BstNSI RCATGY 1 cut(s) 1057
BstSCI CCNGG 7 cut(s) 53, 135, 140, 396, 683, 1044, 1161
BstSFI CTRYAG 2 cut(s) 200, 450
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 1 cut(s) 636
BstV1I GCAGC 4 cut(s) 95, 203, 775, 1147
BsuRI GGCC 4 cut(s) 140, 464, 938, 1097
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 2 cut(s) 439, 489
BtsIMutI CAGTG 3 cut(s) 373, 621, 807
Cac8I GCNNGC 5 cut(s) 312, 634, 673, 979, 1055
CciI TCATGA 1 cut(s) 921
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 2 cut(s) 1159, 1234
CseI GACGC 1 cut(s) 769
Csp6I GTAC 1 cut(s) 619
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 7 cut(s) 332, 385, 872, 922, 1027, 1054, 1231
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 5 cut(s) 36, 147, 185, 1069, 1131
DpnI GATC 3 cut(s) 126, 542, 1018
DpnII GATC 3 cut(s) 124, 540, 1016
DrdI GACNNNNNNGTC 1 cut(s) 780
DseDI GACNNNNNNGTC 1 cut(s) 780
EaeI YGGCCR 2 cut(s) 462, 1095
Eam1104I CTCTTC 2 cut(s) 96, 267
EarI CTCTTC 2 cut(s) 96, 267
Eco130I CCWWGG 1 cut(s) 736
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 2 cut(s) 1159, 1234
Eco57I CTGAAG 1 cut(s) 291
EcoRII CCWGG 5 cut(s) 135, 140, 396, 1044, 1161
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 736
FaeI CATG 7 cut(s) 335, 388, 875, 925, 1030, 1057, 1234
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 3 cut(s) 772, 1011, 1093
FatI CATG 7 cut(s) 331, 384, 871, 921, 1026, 1053, 1230
FauNDI CATATG 1 cut(s) 467
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 5 cut(s) 84, 87, 192, 764, 1136
FokI GGATG 2 cut(s) 446, 476
Fsp4HI GCNGC 5 cut(s) 84, 87, 192, 764, 1136
FspBI CTAG 4 cut(s) 102, 770, 780, 978
GlaI GCGC 1 cut(s) 637
GluI GCNGC 5 cut(s) 84, 87, 192, 764, 1136
GsuI CTGGAG 1 cut(s) 1067
HaeIII GGCC 4 cut(s) 140, 464, 938, 1097
HapII CCGG 2 cut(s) 54, 684
HgaI GACGC 1 cut(s) 769
HhaI GCGC 1 cut(s) 638
Hin1II CATG 7 cut(s) 335, 388, 875, 925, 1030, 1057, 1234
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 673
HinfI GANTC 5 cut(s) 59, 472, 856, 918, 1122
HpaII CCGG 2 cut(s) 54, 684
HphI GGTGA 6 cut(s) 233, 290, 550, 673, 853, 1097
Hpy166II GTNNAC 4 cut(s) 371, 607, 621, 632
Hpy188I TCNGA 3 cut(s) 418, 714, 861
Hpy188III TCNNGA 8 cut(s) 63, 102, 233, 254, 567, 785, 803, 922
Hpy8I GTNNAC 4 cut(s) 371, 607, 621, 632
HpyAV CCTTC 6 cut(s) 99, 278, 404, 658, 949, 1097
HpyCH4III ACNGT 6 cut(s) 204, 368, 625, 733, 811, 1033
HpyCH4IV ACGT 3 cut(s) 325, 525, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 5 cut(s) 36, 147, 185, 1069, 1131
HpySE526I ACGT 3 cut(s) 325, 525, 573
Hsp92II CATG 7 cut(s) 335, 388, 875, 925, 1030, 1057, 1234
HspAI GCGC 1 cut(s) 636
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 3 cut(s) 124, 540, 1016
LguI GCTCTTC 1 cut(s) 96
Lsp1109I GCAGC 4 cut(s) 95, 203, 775, 1147
LweI GCATC 2 cut(s) 323, 778
MaeI CTAG 4 cut(s) 102, 770, 780, 978
MaeII ACGT 3 cut(s) 325, 525, 573
MaeIII GTNAC 1 cut(s) 326
MalI GATC 3 cut(s) 126, 542, 1018
MbiI CCGCTC 1 cut(s) 89
MboI GATC 3 cut(s) 124, 540, 1016
MboII GAAGA 2 cut(s) 83, 284
MfeI CAATTG 2 cut(s) 593, 792
MhlI GDGCHC 1 cut(s) 634
MlsI TGGCCA 2 cut(s) 464, 1097
MluCI AATT 9 cut(s) 352, 428, 439, 519, 593, 748, 792, 1113, 1213
MluNI TGGCCA 2 cut(s) 464, 1097
MlyI GAGTC 1 cut(s) 481
MmeI TCCRAC 1 cut(s) 1042
MnlI CCTC 2 cut(s) 69, 690
Mox20I TGGCCA 2 cut(s) 464, 1097
MscI TGGCCA 2 cut(s) 464, 1097
MseI TTAA 4 cut(s) 69, 177, 522, 846
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 2 cut(s) 464, 1097
MspA1I CMGCKG 2 cut(s) 1130, 1138
MspI CCGG 2 cut(s) 54, 684
MspR9I CCNGG 7 cut(s) 55, 137, 142, 398, 685, 1046, 1163
MunI CAATTG 2 cut(s) 593, 792
Mva1269I GAATGC 2 cut(s) 654, 1147
MvaI CCWGG 5 cut(s) 137, 142, 398, 1046, 1163
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 2 cut(s) 55, 685
NdeI CATATG 1 cut(s) 467
NdeII GATC 3 cut(s) 124, 540, 1016
NheI GCTAGC 1 cut(s) 977
NlaIII CATG 7 cut(s) 335, 388, 875, 925, 1030, 1057, 1234
NlaIV GGNNCC 3 cut(s) 110, 394, 509
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 1057
NspV TTCGAA 1 cut(s) 942
PaeI GCATGC 1 cut(s) 1057
PagI TCATGA 1 cut(s) 921
PciSI GCTCTTC 1 cut(s) 96
PctI GAATGC 2 cut(s) 654, 1147
PfeI GAWTC 4 cut(s) 59, 856, 918, 1122
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 5 cut(s) 85, 88, 193, 765, 1137
PleI GAGTC 1 cut(s) 480
PpsI GAGTC 1 cut(s) 480
PshBI ATTAAT 1 cut(s) 846
PsiI TTATAA 1 cut(s) 228
Psp1406I AACGTT 2 cut(s) 525, 573
Psp6I CCWGG 5 cut(s) 135, 140, 396, 1044, 1161
PspGI CCWGG 5 cut(s) 135, 140, 396, 1044, 1161
PspN4I GGNNCC 3 cut(s) 110, 394, 509
PspPI GGNCC 2 cut(s) 1159, 1234
PstI CTGCAG 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 1138
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 69, 177, 522, 846
SatI GCNGC 5 cut(s) 84, 87, 192, 764, 1136
Sau3AI GATC 3 cut(s) 124, 540, 1016
Sau96I GGNCC 2 cut(s) 1159, 1234
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 7 cut(s) 55, 137, 142, 398, 685, 1046, 1163
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 2 cut(s) 323, 778
SfcI CTRYAG 2 cut(s) 200, 450
SfuI TTCGAA 1 cut(s) 942
SinI GGWCC 2 cut(s) 1159, 1234
SmiMI CAYNNNNRTG 1 cut(s) 303
SpeI ACTAGT 1 cut(s) 779
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 9 cut(s) 352, 428, 439, 519, 593, 748, 792, 1113, 1213
SsiI CCGC 3 cut(s) 87, 505, 1128
SspMI CTAG 4 cut(s) 102, 770, 780, 978
StyD4I CCNGG 7 cut(s) 53, 135, 140, 396, 683, 1044, 1161
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 6 cut(s) 204, 368, 625, 733, 811, 1033
TaiI ACGT 3 cut(s) 328, 528, 576
TaqI TCGA 2 cut(s) 64, 942
TasI AATT 9 cut(s) 352, 428, 439, 519, 593, 748, 792, 1113, 1213
TatI WGTACW 1 cut(s) 618
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 4 cut(s) 59, 856, 918, 1122
Tru1I TTAA 4 cut(s) 69, 177, 522, 846
Tru9I TTAA 4 cut(s) 69, 177, 522, 846
TscAI CASTG 3 cut(s) 373, 628, 814
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 4 cut(s) 83, 191, 763, 1135
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 8 cut(s) 273, 667, 878, 888, 1106, 1166, 1197, 1219
TspGWI ACGGA 2 cut(s) 86, 101
TspRI CASTG 3 cut(s) 373, 628, 814
VneI GTGCAC 1 cut(s) 630
VpaK11BI GGWCC 2 cut(s) 1159, 1234
VspI ATTAAT 1 cut(s) 846
XapI RAATTY 3 cut(s) 352, 1113, 1213
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XspI CTAG 4 cut(s) 102, 770, 780, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.