RLG00000023286

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
21174623 .. 21178758
4136 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023286

Sequence Viewer

Length: 1491 bp
ATGGAGAACCGCTACTTGAAAAAGCACTTGGATGCGGAGCAGAAGCACCCTTCCCCGAATTCTCGACGTAGATGGAAGAAAGCATTCCGTCTTCTCGTCGCTGAGATACAGGGTTCAGTTGATGTGGCCTTTAAGGTTCAAAAAGCAGCATTACTGCAGTTTGACGAAGGTGGTGATTGTAATCCAGATAAAGAGAAACCAGATGAGCTTGCATCTATCAAACGTGACCATGATATTGGGTCAGGTCAAAATTTGGTGGCAGACAATGGACTTGCTATGGGCATAGCAGGAACCCAGGTTGCCAAAGAAGGTTCTGATGTCATCATATTGGATGACAATTTTAGAACTGCAGTAAGTGTGCCCAGATGGAGTCGTGCATACATAAACATCCAAAATTTTATGCAGTTCCTGTTAGCAATTAACGTTGTTACCCTGGTGATCAATGCTGTTTCTGGACGTGTTTCAGGAAACGTCCCCCTTACTGCTGTGCAATTGCTTTGGGTCACCCTGAATATGTACATTGTTGGTGCATGCGCATTTATACAAATGTCCCAGTTTTTGAAGGGTACAAGGTTCATCACCTGGGGCATTTGGAGGAATGTCATTGGTCATAGTATCTATCAACTGACTGTCCTTGGAGTTCTCAATTTCTATGGGACGCAGCTACTAGGGCTTACTAGTCCAGATGCAATTGCTGTTCTTGACACTCTGATATTCAACTCAATAGCGTTTTGCAAGGTGATTAATGAGATGATTCAGATGAGTAGGCATGAAATAGAGATGATAAACACATTTGACAACTGGATATTGGTAGGAATCATGATTTGCACTTTGGCCTTTGAAGTTGTCATAGTTGAGTTCTTGGGAGTGGTTGCTAGCATTGTCCCACTATGGGGACTCACCATTTTTATTGGATCAGTTAGCATGACTGTTGCAGTTGTCCTGGAGTGCATGCCTGTTGGAAACTCAGCCAAAGGGACTGGTGATGGCTTGGCCACAGAAAGACCGGAAATTCATAGATTCTCCGCTGAGCAGCTGAATGCTGTTATGAAGTTGGTCCAGGAAAAATTCCAAGTCGCTTTTCATGGTCCAAAAACGGCACTACTGAAGATCAATTACAGTGCCATATTTGGATCTGTTGGTGAAGTTAGAATCTCAGCTCAAATGATGCAATGCACCTTTGTGGTGTTGGCAACTTTTGTGGTTATTGTAAGGGTTGGGGATGACATTGATTTTGCCTTCTCCATGCTGACATTTTTGGTGAAGCAGAATATTAATGGTATTACAACCATCGTCAAATTTTGGGTTACTTTTGCGGTTGACTATGGTTATGCCTCCGTGGTGATAGCTTTGCTGGTAATGATAAAAATAGTGGTGGAAAAAGTGCGTTGCAACGAGATCAATAATTGGTCTTCGGGAGATGCAACTAGATTTGTCGTCGATTATGCTCTTGCAATGTTAGAGTATTTACTCTTCCATAAAATAGATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

497

Amino Acids

55.05

Weight (kDa)

6.47

Isoelectric Point (pI)

26.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_C PF00689 158 - 312 2.6e-08 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 535
AciI CCGC 4 cut(s) 10, 35, 1026, 1316
AclI AACGTT 1 cut(s) 423
AclWI GGATC 2 cut(s) 922, 1141
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 6 cut(s) 58, 250, 394, 1011, 1067, 1298
AcuI CTGAAG 1 cut(s) 1127
AfaI GTAC 2 cut(s) 518, 568
AfiI CCNNNNNNNGG 2 cut(s) 892, 893
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 5 cut(s) 19, 140, 562, 718, 842
AhlI ACTAGT 1 cut(s) 677
AjiI CACGTC 1 cut(s) 458
AjnI CCWGG 5 cut(s) 294, 432, 581, 942, 1059
AjuI GAANNNNNNNTTGG 4 cut(s) 11, 43, 1065, 1097
AleI CACNNNNGTG 1 cut(s) 1181
AluBI AGCT 5 cut(s) 208, 664, 1036, 1160, 1349
AluI AGCT 5 cut(s) 208, 664, 1036, 1160, 1349
AlwI GGATC 2 cut(s) 922, 1141
AlwNI CAGNNNCTG 1 cut(s) 409
AoxI GGCC 3 cut(s) 126, 834, 993
ApeKI GCWGC 3 cut(s) 146, 661, 1033
ApoI RAATTY 6 cut(s) 58, 250, 394, 1011, 1067, 1298
ArsI GACNNNNNNTTYG 2 cut(s) 1217, 1249
AseI ATTAAT 2 cut(s) 744, 1275
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 1057, 1088
AsuNHI GCTAGC 1 cut(s) 875
AvaII GGWCC 2 cut(s) 1057, 1088
BaeGI GKGCMC 1 cut(s) 363
BalI TGGCCA 1 cut(s) 995
BarI GAAGNNNNNNTAC 4 cut(s) 1100, 1132, 1457, 1489
BbsI GAAGAC 2 cut(s) 83, 1404
BbvI GCAGC 3 cut(s) 158, 673, 1045
BccI CCATC 4 cut(s) 66, 360, 980, 1298
BceAI ACGGC 1 cut(s) 1113
BciT130I CCWGG 5 cut(s) 296, 434, 583, 944, 1061
BclI TGATCA 1 cut(s) 438
BcuI ACTAGT 1 cut(s) 677
BfaI CTAG 4 cut(s) 668, 678, 876, 1428
BfmI CTRYAG 2 cut(s) 155, 348
BisI GCNGC 3 cut(s) 147, 662, 1034
BlpI GCTNAGC 1 cut(s) 1029
BlsI GCNGC 3 cut(s) 148, 663, 1035
Bme1390I CCNGG 5 cut(s) 296, 434, 583, 944, 1061
Bme18I GGWCC 2 cut(s) 1057, 1088
BmgBI CACGTC 1 cut(s) 458
BmgT120I GGNCC 2 cut(s) 1057, 1088
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 5 cut(s) 296, 434, 583, 944, 1061
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 5 cut(s) 22, 221, 676, 1158, 1411
BmtI GCTAGC 1 cut(s) 879
BmuI ACTGGG 1 cut(s) 547
BpiI GAAGAC 2 cut(s) 83, 1404
BpmI CTGGAG 1 cut(s) 965
Bpu1102I GCTNAGC 1 cut(s) 1029
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 5 cut(s) 294, 432, 582, 634, 1338
BsaWI WCCGGW 1 cut(s) 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 892, 893
Bse1I ACTGG 3 cut(s) 553, 806, 985
Bse3DI GCAATG 2 cut(s) 1178, 1461
Bse8I GATNNNNATC 1 cut(s) 180
BseBI CCWGG 5 cut(s) 296, 434, 583, 944, 1061
BseDI CCNNGG 5 cut(s) 294, 432, 582, 634, 1338
BseGI GGATG 4 cut(s) 37, 337, 387, 1228
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 892, 893
BseMI GCAATG 2 cut(s) 1178, 1461
BseMII CTCAG 4 cut(s) 93, 981, 1020, 1170
BseNI ACTGG 3 cut(s) 553, 806, 985
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 3 cut(s) 158, 673, 1045
BshFI GGCC 3 cut(s) 128, 836, 995
BsiSI CCGG 1 cut(s) 1007
BslFI GGGAC 6 cut(s) 458, 535, 670, 869, 909, 991
BslI CCNNNNNNNGG 2 cut(s) 892, 893
BsmFI GGGAC 6 cut(s) 458, 535, 670, 869, 909, 991
BsmI GAATGC 2 cut(s) 83, 1045
BsnI GGCC 3 cut(s) 128, 836, 995
Bsp1286I GDGCHC 1 cut(s) 363
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 5 cut(s) 438, 914, 1110, 1133, 1398
Bsp1720I GCTNAGC 1 cut(s) 1029
BspACI CCGC 4 cut(s) 10, 35, 1026, 1316
BspANI GGCC 3 cut(s) 128, 836, 995
BspCNI CTCAG 4 cut(s) 94, 980, 1021, 1169
BspHI TCATGA 1 cut(s) 819
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 2 cut(s) 159, 352
BspOI GCTAGC 1 cut(s) 879
BspPI GGATC 2 cut(s) 922, 1141
BsrDI GCAATG 2 cut(s) 1178, 1461
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 3 cut(s) 553, 806, 985
BssECI CCNNGG 5 cut(s) 294, 432, 582, 634, 1338
BssMI GATC 5 cut(s) 438, 914, 1110, 1133, 1398
BssT1I CCWWGG 1 cut(s) 634
Bst2UI CCWGG 5 cut(s) 296, 434, 583, 944, 1061
Bst4CI ACNGT 3 cut(s) 631, 931, 1121
Bst6I CTCTTC 1 cut(s) 1478
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 4 cut(s) 210, 532, 877, 953
BstDEI CTNAG 4 cut(s) 102, 967, 1029, 1156
BstDSI CCRYGG 1 cut(s) 1338
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 4 cut(s) 37, 337, 387, 1228
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 5 cut(s) 441, 917, 1113, 1136, 1401
BstMBI GATC 5 cut(s) 438, 914, 1110, 1133, 1398
BstMWI GCNNNNNNNGC 1 cut(s) 670
BstNI CCWGG 5 cut(s) 296, 434, 583, 944, 1061
BstNSI RCATGY 2 cut(s) 534, 955
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 5 cut(s) 294, 432, 581, 942, 1059
BstSFI CTRYAG 2 cut(s) 155, 348
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 158, 673, 1045
BstV2I GAAGAC 2 cut(s) 83, 1404
BstX2I RGATCY 1 cut(s) 1133
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 1133
BsuRI GGCC 3 cut(s) 128, 836, 995
BtgI CCRYGG 1 cut(s) 1338
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 4 cut(s) 37, 337, 387, 1228
BtsIMutI CAGTG 1 cut(s) 1126
Cac8I GCNNGC 4 cut(s) 210, 532, 877, 953
CaiI CAGNNNCTG 1 cut(s) 409
CciI TCATGA 1 cut(s) 819
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 1057, 1088
CseI GACGC 1 cut(s) 667
Csp6I GTAC 2 cut(s) 517, 567
CspCI CAANNNNNGTGG 2 cut(s) 1182, 1217
CviAII CATG 8 cut(s) 230, 531, 770, 820, 925, 952, 1085, 1246
CviQI GTAC 2 cut(s) 517, 567
DdeI CTNAG 4 cut(s) 102, 967, 1029, 1156
DpnI GATC 5 cut(s) 440, 916, 1112, 1135, 1400
DpnII GATC 5 cut(s) 438, 914, 1110, 1133, 1398
EaeI YGGCCR 1 cut(s) 993
Eam1104I CTCTTC 1 cut(s) 1478
EarI CTCTTC 1 cut(s) 1478
Eco130I CCWWGG 1 cut(s) 634
Eco47I GGWCC 2 cut(s) 1057, 1088
Eco57I CTGAAG 1 cut(s) 1127
Eco91I GGTNACC 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 5 cut(s) 294, 432, 581, 942, 1059
EcoT14I CCWWGG 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 634
FaeI CATG 8 cut(s) 233, 534, 773, 823, 928, 955, 1088, 1249
FaqI GGGAC 6 cut(s) 458, 535, 670, 869, 909, 991
FatI CATG 8 cut(s) 229, 530, 769, 819, 924, 951, 1084, 1245
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 3 cut(s) 147, 662, 1034
FokI GGATG 4 cut(s) 44, 344, 374, 1235
Fsp4HI GCNGC 3 cut(s) 147, 662, 1034
FspAI RTGCGCAY 1 cut(s) 535
FspBI CTAG 4 cut(s) 668, 678, 876, 1428
FspI TGCGCA 1 cut(s) 535
GlaI GCGC 1 cut(s) 535
GluI GCNGC 3 cut(s) 147, 662, 1034
GsuI CTGGAG 1 cut(s) 965
HaeIII GGCC 3 cut(s) 128, 836, 995
HapII CCGG 1 cut(s) 1007
HgaI GACGC 1 cut(s) 667
HhaI GCGC 1 cut(s) 536
Hin1II CATG 8 cut(s) 233, 534, 773, 823, 928, 955, 1088, 1249
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 1321
HindII GTYRAC 1 cut(s) 1321
HinfI GANTC 6 cut(s) 370, 754, 816, 897, 1020, 1152
HpaII CCGG 1 cut(s) 1007
Hpy166II GTNNAC 1 cut(s) 1321
Hpy188I TCNGA 3 cut(s) 316, 711, 759
Hpy188III TCNNGA 8 cut(s) 63, 185, 453, 465, 683, 701, 820, 1416
Hpy8I GTNNAC 1 cut(s) 1321
Hpy99I CGWCG 3 cut(s) 69, 101, 1442
HpyAV CCTTC 5 cut(s) 60, 161, 302, 556, 1249
HpyCH4III ACNGT 3 cut(s) 631, 931, 1121
HpyCH4IV ACGT 5 cut(s) 67, 223, 423, 457, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 670
HpyF3I CTNAG 4 cut(s) 102, 967, 1029, 1156
HpySE526I ACGT 5 cut(s) 67, 223, 423, 457, 471
Hsp92II CATG 8 cut(s) 233, 534, 773, 823, 928, 955, 1088, 1249
HspAI GCGC 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 5 cut(s) 438, 914, 1110, 1133, 1398
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 3 cut(s) 158, 673, 1045
LweI GCATC 5 cut(s) 22, 221, 676, 1158, 1411
MaeI CTAG 4 cut(s) 668, 678, 876, 1428
MaeII ACGT 5 cut(s) 67, 223, 423, 457, 471
MaeIII GTNAC 4 cut(s) 224, 427, 502, 1306
MalI GATC 5 cut(s) 440, 916, 1112, 1135, 1400
MboI GATC 5 cut(s) 438, 914, 1110, 1133, 1398
MboII GAAGA 5 cut(s) 83, 88, 1120, 1404, 1465
MfeI CAATTG 2 cut(s) 491, 690
MflI RGATCY 1 cut(s) 1133
MhlI GDGCHC 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 995
MluNI TGGCCA 1 cut(s) 995
MlyI GAGTC 2 cut(s) 379, 891
MmeI TCCRAC 1 cut(s) 940
MnlI CCTC 2 cut(s) 588, 1345
Mox20I TGGCCA 1 cut(s) 995
MroXI GAANNNNTTC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 995
MseI TTAA 4 cut(s) 132, 420, 744, 1275
MslI CAYNNNNRTG 2 cut(s) 30, 1181
Msp20I TGGCCA 1 cut(s) 995
MspA1I CMGCKG 2 cut(s) 1028, 1036
MspI CCGG 1 cut(s) 1007
MspR9I CCNGG 5 cut(s) 296, 434, 583, 944, 1061
MunI CAATTG 2 cut(s) 491, 690
Mva1269I GAATGC 2 cut(s) 83, 1045
MvaI CCWGG 5 cut(s) 296, 434, 583, 944, 1061
MwoI GCNNNNNNNGC 1 cut(s) 670
NdeII GATC 5 cut(s) 438, 914, 1110, 1133, 1398
NheI GCTAGC 1 cut(s) 875
NlaIII CATG 8 cut(s) 233, 534, 773, 823, 928, 955, 1088, 1249
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 224, 502
NsbI TGCGCA 1 cut(s) 535
NspI RCATGY 2 cut(s) 534, 955
OliI CACNNNNGTG 1 cut(s) 1181
PaeI GCATGC 2 cut(s) 534, 955
PagI TCATGA 1 cut(s) 819
PctI GAATGC 2 cut(s) 83, 1045
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 4 cut(s) 754, 816, 1020, 1152
PfoI TCCNGGA 2 cut(s) 942, 1059
PkrI GCNGC 3 cut(s) 148, 663, 1035
PleI GAGTC 2 cut(s) 378, 891
PpsI GAGTC 2 cut(s) 378, 891
PshBI ATTAAT 2 cut(s) 744, 1275
Psp1406I AACGTT 1 cut(s) 423
Psp6I CCWGG 5 cut(s) 294, 432, 581, 942, 1059
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 5 cut(s) 294, 432, 581, 942, 1059
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 2 cut(s) 1057, 1088
PstI CTGCAG 2 cut(s) 159, 352
PstNI CAGNNNCTG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 1036
RsaI GTAC 2 cut(s) 518, 568
RsaNI GTAC 2 cut(s) 517, 567
RseI CAYNNNNRTG 2 cut(s) 30, 1181
SaqAI TTAA 4 cut(s) 132, 420, 744, 1275
SatI GCNGC 3 cut(s) 147, 662, 1034
Sau3AI GATC 5 cut(s) 438, 914, 1110, 1133, 1398
Sau96I GGNCC 2 cut(s) 1057, 1088
SchI GAGTC 2 cut(s) 379, 891
ScrFI CCNGG 5 cut(s) 296, 434, 583, 944, 1061
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 5 cut(s) 22, 221, 676, 1158, 1411
SfcI CTRYAG 2 cut(s) 155, 348
SinI GGWCC 2 cut(s) 1057, 1088
SmiMI CAYNNNNRTG 2 cut(s) 30, 1181
SpeI ACTAGT 1 cut(s) 677
SphI GCATGC 2 cut(s) 534, 955
SsiI CCGC 4 cut(s) 10, 35, 1026, 1316
SspI AATATT 1 cut(s) 1273
SspMI CTAG 4 cut(s) 668, 678, 876, 1428
StyD4I CCNGG 5 cut(s) 294, 432, 581, 942, 1059
StyI CCWWGG 1 cut(s) 634
TaaI ACNGT 3 cut(s) 631, 931, 1121
TaiI ACGT 5 cut(s) 70, 226, 426, 460, 474
TaqI TCGA 2 cut(s) 64, 1440
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 4 cut(s) 754, 816, 1020, 1152
Tru1I TTAA 4 cut(s) 132, 420, 744, 1275
Tru9I TTAA 4 cut(s) 132, 420, 744, 1275
TscAI CASTG 1 cut(s) 1126
TseFI GTSAC 2 cut(s) 224, 502
TseI GCWGC 3 cut(s) 146, 661, 1033
Tsp45I GTSAC 2 cut(s) 224, 502
TspDTI ATGAA 5 cut(s) 565, 786, 1004, 1064, 1073
TspGWI ACGGA 2 cut(s) 77, 1327
TspRI CASTG 1 cut(s) 1126
VpaK11BI GGWCC 2 cut(s) 1057, 1088
VspI ATTAAT 2 cut(s) 744, 1275
XapI RAATTY 6 cut(s) 58, 250, 394, 1011, 1067, 1298
XceI RCATGY 2 cut(s) 534, 955
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 4 cut(s) 668, 678, 876, 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.