Rh3CG288600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005549
Physical Location & Seq
Forward (+)
29221570 .. 29224493
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG288600.1

Sequence Viewer

Length: 624 bp
ATGGAGAGCTACCTGCACAATGACTCCGACGTCCAGCAAGTGGACTCATCAATTAGCATGACTGTTGCAGTTGTCCAGGAGTGCACGCCTGTTGGAAGTTCAGCCAAAGGGACTGGTGATGGCTTGGCCACAGAAGGACTGGAAATTCATAGATTCTCCGCTGAGCAGCTGAATGCTGTTATGAAGTTGGTCCAGGAAAAATTCCAAGTCGCTTTTCATGGTCCAAAAACAGCACTACTGAAGATCAATTACAGTGCCATATTTAGCTCTGTTGGTGAAGTTAGAATCTCAGCTCAAATGATGCAATGTAGCTTTGTGGTGTTGGCAAATTTTGTGGTTATTGTAAGGGTTGGGGATAACATTGATTTTGCCTTCTCCATGCTGACATTTTTGGTGAAGCAGAATATTAATGGTATAACAAGCATCGTCAAATTTTGGCTTACTTTTGCGGTTGACTATGGTTATGCCTCCGTGGTGATAGCCTTGCTGGTAATGATAAAAATAGTGGTGGAAAAAGTGCGTTGCAACGAGATCAATGATTGGTCTTCAAGAGATGCAACTAGATTTGTCGTCGATTATGCTCTTGCAATGTTAGAGTATTTACTCTTCCTTAAAATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.97

Weight (kDa)

5.2

Isoelectric Point (pI)

24.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 29
AatII GACGTC 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 40
AciI CCGC 2 cut(s) 159, 449
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 4 cut(s) 144, 200, 328, 431
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 1 cut(s) 549
AjnI CCWGG 2 cut(s) 75, 192
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 5 cut(s) 9, 169, 267, 293, 312
AluI AGCT 5 cut(s) 9, 169, 267, 293, 312
Alw21I GWGCWC 1 cut(s) 86
Alw44I GTGCAC 1 cut(s) 82
AoxI GGCC 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 4 cut(s) 144, 200, 328, 431
AseI ATTAAT 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 190, 221
AsuHPI GGTGA 4 cut(s) 128, 287, 406, 487
AvaII GGWCC 2 cut(s) 190, 221
BaeGI GKGCMC 1 cut(s) 86
BalI TGGCCA 1 cut(s) 128
BarI GAAGNNNNNNTAC 4 cut(s) 233, 265, 590, 622
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 77, 194
BfaI CTAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 21
BisI GCNGC 1 cut(s) 167
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 2 cut(s) 77, 194
Bme18I GGWCC 2 cut(s) 190, 221
BmgT120I GGNCC 2 cut(s) 190, 221
BmrFI CCNGG 2 cut(s) 77, 194
BmsI GCATC 3 cut(s) 291, 432, 544
BpiI GAAGAC 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 118, 144
Bse3DI GCAATG 2 cut(s) 311, 594
BseBI CCWGG 2 cut(s) 77, 194
BseDI CCNNGG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 2 cut(s) 311, 594
BseMII CTCAG 2 cut(s) 153, 303
BseNI ACTGG 2 cut(s) 118, 144
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 1 cut(s) 178
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 86
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 243, 531
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 2 cut(s) 159, 449
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 154, 302
BspMI ACCTGC 1 cut(s) 21
BsrDI GCAATG 2 cut(s) 311, 594
BsrI ACTGG 2 cut(s) 118, 144
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 2 cut(s) 243, 531
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 77, 194
Bst4CI ACNGT 2 cut(s) 64, 254
Bst6I CTCTTC 1 cut(s) 611
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 162, 289
BstDSI CCRYGG 1 cut(s) 471
BstKTI GATC 2 cut(s) 246, 534
BstMBI GATC 2 cut(s) 243, 531
BstNI CCWGG 2 cut(s) 77, 194
BstSCI CCNGG 2 cut(s) 75, 192
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 190, 221
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 3 cut(s) 58, 218, 379
DdeI CTNAG 2 cut(s) 162, 289
DpnI GATC 2 cut(s) 245, 533
DpnII GATC 2 cut(s) 243, 531
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
Eco47I GGWCC 2 cut(s) 190, 221
Eco57I CTGAAG 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 75, 192
FaeI CATG 3 cut(s) 61, 221, 382
FaqI GGGAC 1 cut(s) 124
FatI CATG 3 cut(s) 57, 217, 378
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 561
GluI GCNGC 1 cut(s) 167
HaeIII GGCC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 61, 221, 382
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 4 cut(s) 23, 44, 153, 285
HphI GGTGA 4 cut(s) 128, 287, 406, 487
Hpy166II GTNNAC 3 cut(s) 43, 84, 454
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 549
Hpy8I GTNNAC 3 cut(s) 43, 84, 454
Hpy99I CGWCG 2 cut(s) 32, 575
HpyAV CCTTC 2 cut(s) 128, 382
HpyCH4III ACNGT 2 cut(s) 64, 254
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 7 cut(s) 16, 68, 84, 304, 525, 557, 587
HpyF3I CTNAG 2 cut(s) 162, 289
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 61, 221, 382
Kzo9I GATC 2 cut(s) 243, 531
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 3 cut(s) 291, 432, 544
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 30
MalI GATC 2 cut(s) 245, 533
MboI GATC 2 cut(s) 243, 531
MboII GAAGA 3 cut(s) 253, 537, 598
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 6 cut(s) 51, 144, 200, 247, 328, 431
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 2 cut(s) 17, 38
MmeI TCCRAC 2 cut(s) 51, 73
MnlI CCTC 1 cut(s) 478
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 2 cut(s) 408, 612
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 2 cut(s) 161, 169
MspR9I CCNGG 2 cut(s) 77, 194
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 2 cut(s) 77, 194
NdeII GATC 2 cut(s) 243, 531
NlaIII CATG 3 cut(s) 61, 221, 382
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 153, 285
PflMI CCANNNNNTGG 1 cut(s) 40
PfoI TCCNGGA 2 cut(s) 75, 192
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 2 cut(s) 17, 38
PpsI GAGTC 2 cut(s) 17, 38
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 75, 192
PspGI CCWGG 2 cut(s) 75, 192
PspPI GGNCC 2 cut(s) 190, 221
PvuII CAGCTG 1 cut(s) 169
SaqAI TTAA 2 cut(s) 408, 612
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 2 cut(s) 243, 531
Sau96I GGNCC 2 cut(s) 190, 221
SchI GAGTC 2 cut(s) 17, 38
ScrFI CCNGG 2 cut(s) 77, 194
SduI GDGCHC 1 cut(s) 86
SetI ASST 7 cut(s) 11, 15, 33, 171, 269, 295, 314
SfaNI GCATC 3 cut(s) 291, 432, 544
SinI GGWCC 2 cut(s) 190, 221
Sse9I AATT 6 cut(s) 51, 144, 200, 247, 328, 431
SsiI CCGC 2 cut(s) 159, 449
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 75, 192
TaaI ACNGT 2 cut(s) 64, 254
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 573
TasI AATT 6 cut(s) 51, 144, 200, 247, 328, 431
TfiI GAWTC 2 cut(s) 153, 285
Tru1I TTAA 2 cut(s) 408, 612
Tru9I TTAA 2 cut(s) 408, 612
TscAI CASTG 1 cut(s) 259
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 3 cut(s) 137, 197, 206
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 40
VneI GTGCAC 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 190, 221
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 4 cut(s) 144, 200, 328, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XspI CTAG 1 cut(s) 561
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.