Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005549

Physical Location & Seq

Genomic Coordinates Reverse (-)

43862654 .. 43866545

Gene Structure 3892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATCTTTCATGTTTACAAATGCTTTAAAAGGGTCCGCTTCCTACCCACTACTTCAAACTCTTCTGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCCGTCGTGTCTCCACTTGAATATCATTGGCCGAGTATCTATCAACTGACTGTCCTTGGAGTTCTCAATTTCTATGGGACGCAGCTCCTAGGACTTACCAGTCCAGATGCAATTGCTGTTCTTGACACCGTGATATTCAACTCAATAGTGTTTTGCAAGATGATTAATGAGATGATTCAGATGGACAGGCATGAAATAGAGATGATAAACACAATTGACAACCGGATATTGGTAGGATTCATGATTTGCACTTTGGCATTCGAAGTTGTCATAGTTGAGTTCTTGGGAGTGGTTGCTAGCATTGTGCCAATATGGGTACTCGGCATTTTTATTGGATCAGTTAGCATGATCGTTGTGCTTGTCTTGGAGTGCACGCCGTTGGAAGTTCAGCCAAAGGGACCGGTGATGGCTTGGCACACACATGGAATTAAGACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

179

Amino Acids

20.16

Weight (kDa)

6.27

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1081700.v1.1
pyrus_communis	pycom12g06770 pycom13g21210 pycom14g06540 pycom14g06560 pycom16g20650
rosa_chinensis	RchiOBHm_Chr3g0483401 RchiOBHm_Chr6g0264021
rosa_laevigata	RLG00000023286
rosa_multiflora	Rmu_sc0006349.1_g000007 Rmu_sc0007793.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031200 Rroxscaffold_4G00300190 Rroxscaffold_4G00318650 Rroxscaffold_6G00398380
rosa_rugosa	Rorug03G0205700 Rorug03G0205800
rosa_samantha	Rh1DG033100 Rh2AG476200 Rh3AG254200 Rh3BG291300 Rh3CG288500 Rh3CG288600 Rh3DG284300 Rh3DG284400
rosa_wichuraiana	Rw0G023730 Rw3G022950 Rw3G022970 Rw6G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	198
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	128
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgeI	ACCGGT	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	57, 89, 119, 238
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	114
Alw44I	GTGCAC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	1 cut(s)	128
ApaLI	GTGCAC	1 cut(s)	469
ApeKI	GCWGC	1 cut(s)	181
AseI	ATTAAT	1 cut(s)	264
AsiGI	ACCGGT	1 cut(s)	499
AspA2I	CCTAGG	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	34, 497
AsuHPI	GGTGA	1 cut(s)	514
AsuII	TTCGAA	1 cut(s)	360
AsuNHI	GCTAGC	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	34, 497
AvrII	CCTAGG	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	2 cut(s)	274, 499
BceAI	ACGGC	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	188, 396
BisI	GCNGC	1 cut(s)	182
BlnI	CCTAGG	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	34, 497
BmgT120I	GGNCC	2 cut(s)	34, 497
BmiI	GGNNCC	2 cut(s)	35, 498
BmsI	GCATC	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	154, 187
BsaWI	WCCGGW	2 cut(s)	321, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	154, 187
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	322, 500
BslFI	GGGAC	2 cut(s)	190, 510
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	190, 510
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	3 cut(s)	3, 434, 447
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	35, 498
BspOI	GCTAGC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	442
BspT104I	TTCGAA	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	154, 187
BssMI	GATC	3 cut(s)	3, 434, 447
BssT1I	CCWWGG	2 cut(s)	154, 187
Bst4CI	ACNGT	2 cut(s)	151, 229
Bst6I	CTCTTC	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	397, 473
BstF5I	GGATG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	6, 437, 450
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	3, 434, 447
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	397, 473
CciI	TCATGA	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	34, 497
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	416
CspAI	ACCGGT	1 cut(s)	499
CviAII	CATG	5 cut(s)	11, 290, 340, 445, 521
CviJI	RGCY	4 cut(s)	130, 184, 490, 509
CviKI_1	RGCY	4 cut(s)	130, 184, 490, 509
CviQI	GTAC	1 cut(s)	416
DpnI	GATC	3 cut(s)	5, 436, 449
DpnII	GATC	3 cut(s)	3, 434, 447
DraI	TTTAAA	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	198
DseDI	GACNNNNNNGTC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	154, 187
Eco47I	GGWCC	2 cut(s)	34, 497
EcoT14I	CCWWGG	2 cut(s)	154, 187
ErhI	CCWWGG	2 cut(s)	154, 187
FaeI	CATG	5 cut(s)	14, 293, 343, 448, 524
FaiI	YATR	9 cut(s)	12, 78, 174, 291, 341, 371, 412, 446, 522
FaqI	GGGAC	2 cut(s)	190, 510
FatI	CATG	5 cut(s)	10, 289, 339, 444, 520
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	182
FspBI	CTAG	2 cut(s)	188, 396
GluI	GCNGC	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	2 cut(s)	322, 500
HgaI	GACGC	1 cut(s)	187
Hin1II	CATG	5 cut(s)	14, 293, 343, 448, 524
HinfI	GANTC	2 cut(s)	274, 336
HpaII	CCGG	2 cut(s)	322, 500
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	2 cut(s)	16, 471
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	3 cut(s)	203, 221, 340
Hpy8I	GTNNAC	2 cut(s)	16, 471
Hpy99I	CGWCG	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	151, 229
HpyCH4V	TGCA	4 cut(s)	209, 255, 348, 471
Hsp92II	CATG	5 cut(s)	14, 293, 343, 448, 524
Kzo9I	GATC	3 cut(s)	3, 434, 447
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	5 cut(s)	211, 216, 271, 335, 513
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	188, 396
MalI	GATC	3 cut(s)	5, 436, 449
MboI	GATC	3 cut(s)	3, 434, 447
MboII	GAAGA	1 cut(s)	54
MfeI	CAATTG	2 cut(s)	210, 312
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	4 cut(s)	166, 210, 312, 525
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	1 cut(s)	91
MseI	TTAA	3 cut(s)	27, 264, 528
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	2 cut(s)	322, 500
MunI	CAATTG	2 cut(s)	210, 312
Mva1269I	GAATGC	1 cut(s)	356
NdeII	GATC	3 cut(s)	3, 434, 447
NheI	GCTAGC	1 cut(s)	395
NlaIII	CATG	5 cut(s)	14, 293, 343, 448, 524
NlaIV	GGNNCC	2 cut(s)	35, 498
NmeAIII	GCCGAG	2 cut(s)	156, 399
NspV	TTCGAA	1 cut(s)	360
PagI	TCATGA	1 cut(s)	339
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	274, 336
PinAI	ACCGGT	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	35, 498
PspPI	GGNCC	2 cut(s)	34, 497
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	3 cut(s)	27, 264, 528
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	3 cut(s)	3, 434, 447
Sau96I	GGNCC	2 cut(s)	34, 497
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	3 cut(s)	83, 186, 539
SfaNI	GCATC	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	360
SinI	GGWCC	2 cut(s)	34, 497
SmiMI	CAYNNNNRTG	1 cut(s)	519
Sse9I	AATT	4 cut(s)	166, 210, 312, 525
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	188, 396
StyI	CCWWGG	2 cut(s)	154, 187
TaaI	ACNGT	2 cut(s)	151, 229
TaqI	TCGA	1 cut(s)	360
TasI	AATT	4 cut(s)	166, 210, 312, 525
TfiI	GAWTC	2 cut(s)	274, 336
Tru1I	TTAA	3 cut(s)	27, 264, 528
Tru9I	TTAA	3 cut(s)	27, 264, 528
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	306, 328
TspGWI	ACGGA	1 cut(s)	91
VneI	GTGCAC	1 cut(s)	469
VpaK11BI	GGWCC	2 cut(s)	34, 497
VspI	ATTAAT	1 cut(s)	264
XmaJI	CCTAGG	1 cut(s)	187
XspI	CTAG	2 cut(s)	188, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.