Rmu_sc0007793.1_g000001

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007793.1
OG0005549
Physical Location & Seq
Forward (+)
1 .. 4762
4762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007793.1_g000001.1.cds

Sequence Viewer

Length: 1431 bp
ggttcagttgaagttgctgttaaggttcaaagagcagcaatactacagtttgacaaagatggtggtgattataatccagataaagagaaaccagttcgagatgaatacaagcctgaggagactatagaaggttccagcactcgccaagatgagcttccatctatcaagcgtgaccatgatatcaggtcaggtcaaaatttggtggcagacagtgaacttgctatgggcatagcaggaacccaggttgccaaagaaggttctgatgttatcaaattggatgacaattttacaactgcagtaagtgtggccagatggagtcgtccatacataaacatccgaaagtttatgcggttccagttagcaattaacgttgttgctctggtgatcaatgctatttctgtacatgtttcaggaagtgttccccttactgctgtgcaattgctttgggtcaacctgattatgtacactgttggtgcacgcgcacttatacgaatgccccagtttttgaagggtgcaagcttcatcaccaggggcatttggaggaatatcattggtcagagtatctatcaactgactgtccttggagttctcaatttctatgggacgcagctactaggacttactagtccagatgcaattgctgttcttgacactgtgatattcaactcaatagtgttttacaaggtgattaatgagatgattcagatgaataggcatgaaatagagatgataaacacatttgacaactggatattggtaggattcatgatttgcactttggccttcgaagttgtcatagttgagttcttgggagtggttgctagcattgtgccaatatgggtactgggcatttttattggatcagttagcatgactgttgcaattgtcctggagtgcatgcctgttggaagttcagccaaagggactggtgatggcttggccacagaaggacgggaagtttatagattctctgctgagcagccgaacgctgttatgaagttggcccaggaaaaatttcaagtcgctttccatggtaaaaaaacagcactactgaagatcaataactgtgccatctttagatttgttggtgaagttagaatctcagctcaaatgatgcaatgtacctgtgtggtgttggcaacttttgtggttatagtaagggttggggatgacattgattttgccttctccatgctgacatttttggtgaagcagaatattaatggtattacaaccatcgtcaaattttggcttacttttgcggttgactatggttatgcctccgtggtgatagctttgctggtaatgataagaatagtggtggaaaaagtgcgttgcgacgagatcgatcattggtcttcaagagatgcaactagatttgtcgtcgattatgctcttgcaatgttagagtatttactcttccttaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

476

Amino Acids

52.97

Weight (kDa)

6.06

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AasI GACNNNNNNGTC 1 cut(s) 624
AccII CGCG 1 cut(s) 480
AciI CCGC 2 cut(s) 349, 1262
AclI AACGTT 1 cut(s) 369
AclWI GGATC 1 cut(s) 868
AcoI YGGCCR 2 cut(s) 306, 939
AcsI RAATTY 3 cut(s) 196, 1013, 1244
AcuI CTGAAG 1 cut(s) 1073
AfaI GTAC 4 cut(s) 402, 464, 843, 1123
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 6 cut(s) 11, 29, 508, 664, 1019, 1362
AhlI ACTAGT 1 cut(s) 623
AjnI CCWGG 4 cut(s) 240, 527, 888, 1005
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 5 cut(s) 154, 519, 610, 1106, 1295
AluI AGCT 5 cut(s) 154, 519, 610, 1106, 1295
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 113
Alw44I GTGCAC 1 cut(s) 474
AlwI GGATC 1 cut(s) 868
AoxI GGCC 4 cut(s) 306, 780, 939, 1002
ApaLI GTGCAC 1 cut(s) 474
ApeKI GCWGC 3 cut(s) 35, 607, 979
ApoI RAATTY 3 cut(s) 196, 1013, 1244
ArsI GACNNNNNNTTYG 2 cut(s) 1163, 1195
AseI ATTAAT 2 cut(s) 690, 1221
Asp700I GAANNNNTTC 1 cut(s) 1014
AspLEI GCGC 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 1003
AsuHPI GGTGA 8 cut(s) 77, 394, 517, 697, 941, 1100, 1219, 1300
AsuII TTCGAA 1 cut(s) 786
AsuNHI GCTAGC 1 cut(s) 821
AxyI CCTNAGG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 478
BalI TGGCCA 2 cut(s) 308, 941
BarI GAAGNNNNNNTAC 1 cut(s) 1403
BbsI GAAGAC 1 cut(s) 1350
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 3 cut(s) 47, 619, 991
BccI CCATC 6 cut(s) 53, 166, 306, 926, 1079, 1244
BciT130I CCWGG 4 cut(s) 242, 529, 890, 1007
BclI TGATCA 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 113
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 4 cut(s) 614, 624, 822, 1374
BfmI CTRYAG 3 cut(s) 44, 123, 294
BisI GCNGC 3 cut(s) 36, 608, 980
BlpI GCTNAGC 1 cut(s) 975
BlsI GCNGC 3 cut(s) 37, 609, 981
Bme1390I CCNGG 4 cut(s) 242, 529, 890, 1007
BmgT120I GGNCC 1 cut(s) 1003
BmiI GGNNCC 3 cut(s) 133, 238, 353
BmrFI CCNGG 4 cut(s) 242, 529, 890, 1007
BmrI ACTGGG 2 cut(s) 493, 854
BmsI GCATC 3 cut(s) 622, 1104, 1357
BmtI GCTAGC 1 cut(s) 825
BmuI ACTGGG 2 cut(s) 493, 854
BpiI GAAGAC 1 cut(s) 1350
BpmI CTGGAG 1 cut(s) 911
Bpu1102I GCTNAGC 1 cut(s) 975
Bpu14I TTCGAA 1 cut(s) 786
Bsa29I ATCGAT 1 cut(s) 1347
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 6 cut(s) 240, 528, 580, 1005, 1030, 1284
Bse1I ACTGG 6 cut(s) 92, 355, 499, 752, 849, 931
Bse21I CCTNAGG 1 cut(s) 114
Bse3DI GCAATG 2 cut(s) 1124, 1407
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 4 cut(s) 242, 529, 890, 1007
BseCI ATCGAT 1 cut(s) 1347
BseDI CCNNGG 6 cut(s) 240, 528, 580, 1005, 1030, 1284
BseGI GGATG 3 cut(s) 283, 333, 1174
BseJI GATNNNNATC 1 cut(s) 72
BseMI GCAATG 2 cut(s) 1124, 1407
BseMII CTCAG 3 cut(s) 105, 966, 1116
BseNI ACTGG 6 cut(s) 92, 355, 499, 752, 849, 931
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 3 cut(s) 47, 619, 991
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 4 cut(s) 308, 782, 941, 1004
BshVI ATCGAT 1 cut(s) 1347
BsiHKAI GWGCWC 1 cut(s) 478
BslFI GGGAC 2 cut(s) 616, 937
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 616, 937
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 4 cut(s) 308, 782, 941, 1004
Bsp119I TTCGAA 1 cut(s) 786
Bsp1286I GDGCHC 1 cut(s) 478
Bsp1407I TGTACA 2 cut(s) 400, 462
Bsp143I GATC 5 cut(s) 384, 860, 1056, 1344, 1348
Bsp1720I GCTNAGC 1 cut(s) 975
Bsp19I CCATGG 1 cut(s) 1030
BspACI CCGC 2 cut(s) 349, 1262
BspANI GGCC 4 cut(s) 308, 782, 941, 1004
BspCNI CTCAG 3 cut(s) 106, 967, 1115
BspDI ATCGAT 1 cut(s) 1347
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 133, 238, 353
BspMAI CTGCAG 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 825
BspPI GGATC 1 cut(s) 868
BspT104I TTCGAA 1 cut(s) 786
BsrDI GCAATG 2 cut(s) 1124, 1407
BsrGI TGTACA 2 cut(s) 400, 462
BsrI ACTGG 6 cut(s) 92, 355, 499, 752, 849, 931
BssECI CCNNGG 6 cut(s) 240, 528, 580, 1005, 1030, 1284
BssMI GATC 5 cut(s) 384, 860, 1056, 1344, 1348
BssT1I CCWWGG 2 cut(s) 580, 1030
Bst2UI CCWGG 4 cut(s) 242, 529, 890, 1007
Bst4CI ACNGT 7 cut(s) 48, 212, 469, 577, 655, 877, 1067
Bst6I CTCTTC 1 cut(s) 1424
BstAUI TGTACA 2 cut(s) 400, 462
BstBI TTCGAA 1 cut(s) 786
BstC8I GCNNGC 4 cut(s) 478, 517, 823, 899
BstDEI CTNAG 3 cut(s) 114, 975, 1102
BstDSI CCRYGG 2 cut(s) 1030, 1284
BstF5I GGATG 3 cut(s) 283, 333, 1174
BstFNI CGCG 1 cut(s) 480
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 5 cut(s) 387, 863, 1059, 1347, 1351
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 5 cut(s) 384, 860, 1056, 1344, 1348
BstNI CCWGG 4 cut(s) 242, 529, 890, 1007
BstNSI RCATGY 2 cut(s) 407, 901
BstSCI CCNGG 4 cut(s) 240, 527, 888, 1005
BstSFI CTRYAG 3 cut(s) 44, 123, 294
BstSLI GKGCMC 1 cut(s) 478
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 3 cut(s) 47, 619, 991
BstV2I GAAGAC 1 cut(s) 1350
Bsu15I ATCGAT 1 cut(s) 1347
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 4 cut(s) 308, 782, 941, 1004
BsuTUI ATCGAT 1 cut(s) 1347
BtgI CCRYGG 2 cut(s) 1030, 1284
BtsCI GGATG 3 cut(s) 283, 333, 1174
BtsIMutI CAGTG 3 cut(s) 217, 465, 651
Cac8I GCNNGC 4 cut(s) 478, 517, 823, 899
CciI TCATGA 1 cut(s) 765
CfoI GCGC 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 1003
ClaI ATCGAT 1 cut(s) 1347
CseI GACGC 1 cut(s) 613
Csp6I GTAC 4 cut(s) 401, 463, 842, 1122
CspCI CAANNNNNGTGG 4 cut(s) 43, 78, 1128, 1163
CviAII CATG 8 cut(s) 176, 404, 716, 766, 871, 898, 1031, 1192
CviQI GTAC 4 cut(s) 401, 463, 842, 1122
DdeI CTNAG 3 cut(s) 114, 975, 1102
DpnI GATC 5 cut(s) 386, 862, 1058, 1346, 1350
DpnII GATC 5 cut(s) 384, 860, 1056, 1344, 1348
DrdI GACNNNNNNGTC 1 cut(s) 624
DseDI GACNNNNNNGTC 1 cut(s) 624
EaeI YGGCCR 2 cut(s) 306, 939
Eam1104I CTCTTC 1 cut(s) 1424
EarI CTCTTC 1 cut(s) 1424
Eco130I CCWWGG 2 cut(s) 580, 1030
Eco32I GATATC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 1073
Eco81I CCTNAGG 1 cut(s) 114
EcoRII CCWGG 4 cut(s) 240, 527, 888, 1005
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 580, 1030
ErhI CCWWGG 2 cut(s) 580, 1030
FaeI CATG 8 cut(s) 179, 407, 719, 769, 874, 901, 1034, 1195
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 2 cut(s) 616, 937
FatI CATG 8 cut(s) 175, 403, 715, 765, 870, 897, 1030, 1191
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 36, 608, 980
FokI GGATG 3 cut(s) 290, 320, 1181
Fsp4HI GCNGC 3 cut(s) 36, 608, 980
FspBI CTAG 4 cut(s) 614, 624, 822, 1374
GlaI GCGC 1 cut(s) 481
GluI GCNGC 3 cut(s) 36, 608, 980
GsuI CTGGAG 1 cut(s) 911
HaeIII GGCC 4 cut(s) 308, 782, 941, 1004
HgaI GACGC 1 cut(s) 613
HhaI GCGC 1 cut(s) 482
Hin1II CATG 8 cut(s) 179, 407, 719, 769, 874, 901, 1034, 1195
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HincII GTYRAC 2 cut(s) 451, 1267
HindII GTYRAC 2 cut(s) 451, 1267
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 5 cut(s) 316, 700, 762, 966, 1098
HphI GGTGA 8 cut(s) 77, 394, 517, 697, 941, 1100, 1219, 1300
Hpy166II GTNNAC 5 cut(s) 215, 451, 465, 476, 1267
Hpy188I TCNGA 4 cut(s) 262, 338, 558, 705
Hpy188III TCNNGA 7 cut(s) 77, 98, 411, 629, 647, 766, 1362
Hpy8I GTNNAC 5 cut(s) 215, 451, 465, 476, 1267
Hpy99I CGWCG 2 cut(s) 1343, 1388
HpyAV CCTTC 6 cut(s) 122, 248, 502, 793, 941, 1195
HpyCH4III ACNGT 7 cut(s) 48, 212, 469, 577, 655, 877, 1067
HpyCH4IV ACGT 1 cut(s) 369
HpyF3I CTNAG 3 cut(s) 114, 975, 1102
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 8 cut(s) 179, 407, 719, 769, 874, 901, 1034, 1195
HspAI GCGC 1 cut(s) 480
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 5 cut(s) 384, 860, 1056, 1344, 1348
Lsp1109I GCAGC 3 cut(s) 47, 619, 991
LweI GCATC 3 cut(s) 622, 1104, 1357
MaeI CTAG 4 cut(s) 614, 624, 822, 1374
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 170
MalI GATC 5 cut(s) 386, 862, 1058, 1346, 1350
MboI GATC 5 cut(s) 384, 860, 1056, 1344, 1348
MboII GAAGA 3 cut(s) 1066, 1350, 1411
MfeI CAATTG 3 cut(s) 437, 636, 882
MhlI GDGCHC 1 cut(s) 478
MlsI TGGCCA 2 cut(s) 308, 941
MluNI TGGCCA 2 cut(s) 308, 941
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 886
MnlI CCTC 3 cut(s) 109, 534, 1291
Mox20I TGGCCA 2 cut(s) 308, 941
MroXI GAANNNNTTC 1 cut(s) 1014
MscI TGGCCA 2 cut(s) 308, 941
MseI TTAA 5 cut(s) 21, 366, 690, 1221, 1425
Msp20I TGGCCA 2 cut(s) 308, 941
MspR9I CCNGG 4 cut(s) 242, 529, 890, 1007
MunI CAATTG 3 cut(s) 437, 636, 882
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 4 cut(s) 242, 529, 890, 1007
MvnI CGCG 1 cut(s) 480
NcoI CCATGG 1 cut(s) 1030
NdeII GATC 5 cut(s) 384, 860, 1056, 1344, 1348
NheI GCTAGC 1 cut(s) 821
NlaIII CATG 8 cut(s) 179, 407, 719, 769, 874, 901, 1034, 1195
NlaIV GGNNCC 3 cut(s) 133, 238, 353
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 2 cut(s) 407, 901
NspV TTCGAA 1 cut(s) 786
PaeI GCATGC 1 cut(s) 901
PagI TCATGA 1 cut(s) 765
PciI ACATGT 1 cut(s) 403
PctI GAATGC 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 1014
PfeI GAWTC 4 cut(s) 700, 762, 966, 1098
PfoI TCCNGGA 1 cut(s) 888
PkrI GCNGC 3 cut(s) 37, 609, 981
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PscI ACATGT 1 cut(s) 403
PshBI ATTAAT 2 cut(s) 690, 1221
PsiI TTATAA 1 cut(s) 72
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 4 cut(s) 240, 527, 888, 1005
PspGI CCWGG 4 cut(s) 240, 527, 888, 1005
PspN4I GGNNCC 3 cut(s) 133, 238, 353
PspPI GGNCC 1 cut(s) 1003
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 4 cut(s) 402, 464, 843, 1123
RsaNI GTAC 4 cut(s) 401, 463, 842, 1122
SaqAI TTAA 5 cut(s) 21, 366, 690, 1221, 1425
SatI GCNGC 3 cut(s) 36, 608, 980
Sau3AI GATC 5 cut(s) 384, 860, 1056, 1344, 1348
Sau96I GGNCC 1 cut(s) 1003
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 4 cut(s) 242, 529, 890, 1007
SduI GDGCHC 1 cut(s) 478
SfaNI GCATC 3 cut(s) 622, 1104, 1357
SfcI CTRYAG 3 cut(s) 44, 123, 294
SfuI TTCGAA 1 cut(s) 786
SpeI ACTAGT 1 cut(s) 623
SphI GCATGC 1 cut(s) 901
SsiI CCGC 2 cut(s) 349, 1262
SspI AATATT 1 cut(s) 1219
SspMI CTAG 4 cut(s) 614, 624, 822, 1374
StyD4I CCNGG 4 cut(s) 240, 527, 888, 1005
StyI CCWWGG 2 cut(s) 580, 1030
TaaI ACNGT 7 cut(s) 48, 212, 469, 577, 655, 877, 1067
TaiI ACGT 1 cut(s) 372
TaqI TCGA 4 cut(s) 97, 786, 1347, 1386
TatI WGTACW 2 cut(s) 400, 462
TfiI GAWTC 4 cut(s) 700, 762, 966, 1098
Tru1I TTAA 5 cut(s) 21, 366, 690, 1221, 1425
Tru9I TTAA 5 cut(s) 21, 366, 690, 1221, 1425
TscAI CASTG 3 cut(s) 217, 472, 658
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 3 cut(s) 35, 607, 979
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 6 cut(s) 117, 511, 722, 732, 754, 1010
TspGWI ACGGA 1 cut(s) 1273
TspRI CASTG 3 cut(s) 217, 472, 658
VneI GTGCAC 1 cut(s) 474
VspI ATTAAT 2 cut(s) 690, 1221
XapI RAATTY 3 cut(s) 196, 1013, 1244
XceI RCATGY 2 cut(s) 407, 901
XmnI GAANNNNTTC 1 cut(s) 1014
XspI CTAG 4 cut(s) 614, 624, 822, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.