Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005549

Physical Location & Seq

Genomic Coordinates Forward (+)

7065540 .. 7066535

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATCAATTTTGTTTCTGCATGTGTCTCAGGATCTGCTCCCCTTACAGCGGTGCAACTGCTTTGGGTGAACATGATTATGGACACTCTTGGTGCTTTGGCACTGGCAACAGAGCCTCCAAATGATGGACTTATGAAAAGGCCCCCAGTTGGGAGGGGTACCAGCTTCATCACCAAGGCTATGTGGAGAAATATCATTGGTCAGAGTATCTATCAACTGGCTGTCCTTGGAGTTCTCAATTTCTCTGGGGAGAAGCTACTAGGACTTACTGGTTCAGATGCAACTGAGGTTCTCAACACTGTGATATTCAACGCATTTGTGTTTTGCCAGGTGTTCAATCAGATAAACAGTCGTGACATAGAGAAGATAAACATATTCCGTGGAATGTTCGACAGTTGGGTATTTCTAATCGTCATGGTTTGCACAGCGGCGTTCCAGGTTATCATAGTAGAGTTCTTGGGAGCTTTTGCTAGCACTGTGCCGCTAAGCTGGCAACTATGGTTACTCAGCATTTTACTTGGAGCAGTTAGCATGCTTGTTGCAGTTGTGCTCAAATTAATACCTGTTGAAAGGACAACTAAGCACCATGACGGATATGAAGCGCTTCCTTCCGGTCCTCCAGAGGGCATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

212

Amino Acids

22.98

Weight (kDa)

5.63

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1081700.v1.1
pyrus_communis	pycom12g06770 pycom13g21210 pycom14g06540 pycom14g06560 pycom16g20650
rosa_chinensis	RchiOBHm_Chr3g0483401 RchiOBHm_Chr6g0264021
rosa_laevigata	RLG00000023286
rosa_multiflora	Rmu_sc0006349.1_g000007 Rmu_sc0007793.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031200 Rroxscaffold_4G00300190 Rroxscaffold_4G00318650 Rroxscaffold_6G00398380
rosa_rugosa	Rorug03G0205700 Rorug03G0205800
rosa_samantha	Rh1DG033100 Rh2AG476200 Rh3AG254200 Rh3BG291300 Rh3CG288500 Rh3CG288600 Rh3DG284300 Rh3DG284400
rosa_wichuraiana	Rw0G023730 Rw3G022950 Rw3G022970 Rw6G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	3 cut(s)	50, 428, 482
AclWI	GGATC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	160
AfeI	AGCGCT	1 cut(s)	603
AfiI	CCNNNNNNNGG	5 cut(s)	49, 125, 149, 150, 623
AgsI	TTSAA	3 cut(s)	310, 337, 569
AjnI	CCWGG	2 cut(s)	327, 435
AluBI	AGCT	4 cut(s)	165, 256, 464, 489
AluI	AGCT	4 cut(s)	165, 256, 464, 489
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	35
Aor51HI	AGCGCT	1 cut(s)	603
AoxI	GGCC	1 cut(s)	140
AseI	ATTAAT	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	603
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	2 cut(s)	141, 614
AsuHPI	GGTGA	2 cut(s)	79, 163
AsuNHI	GCTAGC	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	552
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	329, 437
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	2 cut(s)	260, 471
BfoI	RGCGCY	1 cut(s)	605
BisI	GCNGC	2 cut(s)	429, 482
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	2 cut(s)	430, 483
Bme1390I	CCNGG	2 cut(s)	329, 437
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	141, 614
BmiI	GGNNCC	2 cut(s)	143, 160
BmrFI	CCNGG	2 cut(s)	329, 437
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	268
BmtI	GCTAGC	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	174, 226, 379
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 125, 149, 150, 623
Bse1I	ACTGG	4 cut(s)	108, 146, 222, 274
BseBI	CCWGG	2 cut(s)	329, 437
BseDI	CCNNGG	3 cut(s)	174, 226, 379
BseLI	CCNNNNNNNGG	5 cut(s)	49, 125, 149, 150, 623
BseMII	CTCAG	3 cut(s)	42, 276, 520
BseNI	ACTGG	4 cut(s)	108, 146, 222, 274
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	612
BslI	CCNNNNNNNGG	5 cut(s)	49, 125, 149, 150, 623
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	3, 32
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	3 cut(s)	50, 428, 482
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	3 cut(s)	41, 277, 519
BspLI	GGNNCC	2 cut(s)	143, 160
BspOI	GCTAGC	1 cut(s)	474
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	158
BsrI	ACTGG	4 cut(s)	108, 146, 222, 274
BssECI	CCNNGG	3 cut(s)	174, 226, 379
BssMI	GATC	2 cut(s)	3, 32
BssT1I	CCWWGG	2 cut(s)	174, 226
Bst2UI	CCWGG	2 cut(s)	329, 437
Bst4CI	ACNGT	4 cut(s)	301, 350, 395, 478
BstC8I	GCNNGC	3 cut(s)	472, 491, 533
BstDEI	CTNAG	5 cut(s)	28, 285, 485, 506, 579
BstDSI	CCRYGG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	605
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	2 cut(s)	6, 35
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	3, 32
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	2 cut(s)	329, 437
BstNSI	RCATGY	2 cut(s)	24, 535
BstSCI	CCNGG	2 cut(s)	327, 435
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	379
BtsIMutI	CAGTG	3 cut(s)	101, 297, 474
Cac8I	GCNNGC	3 cut(s)	472, 491, 533
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	2 cut(s)	141, 614
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	6 cut(s)	21, 73, 415, 532, 587, 628
CviJI	RGCY	8 cut(s)	115, 142, 165, 179, 221, 256, 464, 489
CviKI_1	RGCY	8 cut(s)	115, 142, 165, 179, 221, 256, 464, 489
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	5 cut(s)	28, 285, 485, 506, 579
DpnI	GATC	2 cut(s)	5, 34
DpnII	GATC	2 cut(s)	3, 32
Eco130I	CCWWGG	2 cut(s)	174, 226
Eco47I	GGWCC	1 cut(s)	614
Eco47III	AGCGCT	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	327, 435
EcoT14I	CCWWGG	2 cut(s)	174, 226
ErhI	CCWWGG	2 cut(s)	174, 226
FaeI	CATG	6 cut(s)	24, 76, 418, 535, 590, 631
FatI	CATG	6 cut(s)	20, 72, 414, 531, 586, 627
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	429, 482
Fsp4HI	GCNGC	2 cut(s)	429, 482
FspBI	CTAG	2 cut(s)	260, 471
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	2 cut(s)	429, 482
GsuI	CTGGAG	1 cut(s)	603
HaeII	RGCGCY	1 cut(s)	605
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	612
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	6 cut(s)	24, 76, 418, 535, 590, 631
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	2 cut(s)	79, 163
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	204, 277, 342
Hpy188III	TCNNGA	3 cut(s)	30, 353, 620
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	4 cut(s)	301, 350, 395, 478
HpyCH4V	TGCA	5 cut(s)	20, 55, 281, 423, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	5 cut(s)	28, 285, 485, 506, 579
Hsp92II	CATG	6 cut(s)	24, 76, 418, 535, 590, 631
HspAI	GCGC	1 cut(s)	602
KpnI	GGTACC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 32
LmnI	GCTCC	3 cut(s)	43, 461, 521
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	260, 471
MaeIII	GTNAC	2 cut(s)	353, 501
MalI	GATC	2 cut(s)	5, 34
MboI	GATC	2 cut(s)	3, 32
MboII	GAAGA	1 cut(s)	376
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	3 cut(s)	7, 238, 554
MnlI	CCTC	5 cut(s)	126, 147, 280, 616, 627
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	2 cut(s)	50, 428
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	2 cut(s)	329, 437
MvaI	CCWGG	2 cut(s)	329, 437
MwoI	GCNNNNNNNGC	1 cut(s)	490
NdeII	GATC	2 cut(s)	3, 32
NheI	GCTAGC	1 cut(s)	470
NlaIII	CATG	6 cut(s)	24, 76, 418, 535, 590, 631
NlaIV	GGNNCC	2 cut(s)	143, 160
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	2 cut(s)	24, 535
PaeI	GCATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	603
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	430, 483
PshBI	ATTAAT	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	327, 435
PspGI	CCWGG	2 cut(s)	327, 435
PspN4I	GGNNCC	2 cut(s)	143, 160
PspPI	GGNCC	2 cut(s)	141, 614
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	32
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	2 cut(s)	429, 482
Sau3AI	GATC	2 cut(s)	3, 32
Sau96I	GGNCC	2 cut(s)	141, 614
ScrFI	CCNGG	2 cut(s)	329, 437
SduI	GDGCHC	1 cut(s)	552
SetI	ASST	8 cut(s)	167, 258, 291, 333, 441, 466, 491, 565
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	535
Sse9I	AATT	3 cut(s)	7, 238, 554
SsiI	CCGC	3 cut(s)	50, 428, 482
SspMI	CTAG	2 cut(s)	260, 471
StyD4I	CCNGG	2 cut(s)	327, 435
StyI	CCWWGG	2 cut(s)	174, 226
TaaI	ACNGT	4 cut(s)	301, 350, 395, 478
TaqI	TCGA	1 cut(s)	390
TasI	AATT	3 cut(s)	7, 238, 554
TauI	GCSGC	2 cut(s)	431, 484
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	3 cut(s)	108, 304, 481
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	149, 157, 612
TspGWI	ACGGA	2 cut(s)	368, 606
TspRI	CASTG	3 cut(s)	108, 304, 481
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	614
VspI	ATTAAT	1 cut(s)	557
XceI	RCATGY	2 cut(s)	24, 535
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	2 cut(s)	260, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.