Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005549

Physical Location & Seq

Genomic Coordinates Reverse (-)

20346306 .. 20346926

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGACGATCCAAAGCGGTGCGGTAAATCAAGTTATAAACTGTCTTGTGAGAACAATGAAGATGGTGGGCCAATTGGTTATAAACAAAACCATTCCGGCAGAAATTAGAGGAGGGCGGGCATCGGCCATGGCGGTAGTAATGAGCTGCGCTGCTGCAGCAAGCCTTCCCCATTTACGGGTCGATACCCAACTCGTTTTCATTTGGAGGAATATCATTGGCCGGAGTATCTATCAACGACTTGTCCTTGGAGTTCTCAATTTCTATGGGACGCAGCTCCTAGGACTTACCGGTCCGGATGCAATTGCTGTTCTTGACACCGTGATATTCAACTCAATAGTGTTTTGCAAGATGATTAATGAGATGATTCGGATGGACAGGCATGAAATAGAGATGATAAACACAATTGACAACTGGATATTGGTAGGATTCATGATTTGCACTTTGGCCTTCGAAGTTGTCACGGTTGAGTTCTTGGGAGTGGTTGCTAGCATTGTGCCAATATGGGTACTCGGCATTTTTATTGGATCAGTTAGCATGATTGTTGCGGTTGTCTGGAGTGCACGCTTTGTTGGAAGTTCAGCCAAAGGGACTGGTGATGGCTTGGCACACACATGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009624 GO:0009628 GO:0009705 GO:0010035 GO:0010941 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055081 GO:0055085 GO:0060548 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098542 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

206

Amino Acids

22.46

Weight (kDa)

8.45

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1081700.v1.1
pyrus_communis	pycom12g06770 pycom13g21210 pycom14g06540 pycom14g06560 pycom16g20650
rosa_chinensis	RchiOBHm_Chr3g0483401 RchiOBHm_Chr6g0264021
rosa_laevigata	RLG00000023286
rosa_multiflora	Rmu_sc0006349.1_g000007 Rmu_sc0007793.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031200 Rroxscaffold_4G00300190 Rroxscaffold_4G00318650 Rroxscaffold_6G00398380
rosa_rugosa	Rorug03G0205700 Rorug03G0205800
rosa_samantha	Rh1DG033100 Rh2AG476200 Rh3AG254200 Rh3BG291300 Rh3CG288500 Rh3CG288600 Rh3DG284300 Rh3DG284400
rosa_wichuraiana	Rw0G023730 Rw3G022950 Rw3G022970 Rw6G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	35, 80
AasI	GACNNNNNNGTC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	5 cut(s)	15, 20, 115, 131, 545
AclWI	GGATC	1 cut(s)	532
AcoI	YGGCCR	2 cut(s)	123, 217
AfaI	GTAC	1 cut(s)	507
AfiI	CCNNNNNNNGG	2 cut(s)	174, 175
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	2 cut(s)	144, 274
AluI	AGCT	2 cut(s)	144, 274
Alw21I	GWGCWC	1 cut(s)	562
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	532
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	4 cut(s)	67, 123, 217, 444
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	5 cut(s)	144, 149, 152, 155, 271
AseI	ATTAAT	1 cut(s)	354
AsiGI	ACCGGT	1 cut(s)	287
AspA2I	CCTAGG	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	67, 290
AsuHPI	GGTGA	1 cut(s)	605
AsuII	TTCGAA	1 cut(s)	450
AsuNHI	GCTAGC	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	290
AvrII	CCTAGG	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	5 cut(s)	131, 136, 139, 167, 283
BccI	CCATC	3 cut(s)	55, 364, 590
BfaI	CTAG	2 cut(s)	278, 486
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	5 cut(s)	145, 150, 153, 156, 272
BlnI	CCTAGG	1 cut(s)	277
BlsI	GCNGC	5 cut(s)	146, 151, 154, 157, 273
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	67, 290
BmsI	GCATC	2 cut(s)	128, 286
BmtI	GCTAGC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	574
Bpu14I	TTCGAA	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	126, 244, 277
BsaWI	WCCGGW	2 cut(s)	287, 292
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 175
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	416, 595
BseAI	TCCGGA	1 cut(s)	292
BseDI	CCNNGG	3 cut(s)	126, 244, 277
BseGI	GGATG	2 cut(s)	301, 375
BseLI	CCNNNNNNNGG	2 cut(s)	174, 175
BseNI	ACTGG	2 cut(s)	416, 595
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	5 cut(s)	131, 136, 139, 167, 283
BshFI	GGCC	4 cut(s)	69, 125, 219, 446
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	4 cut(s)	95, 220, 288, 293
BslFI	GGGAC	2 cut(s)	280, 601
BslI	CCNNNNNNNGG	2 cut(s)	174, 175
BsmFI	GGGAC	2 cut(s)	280, 601
BsnI	GGCC	4 cut(s)	69, 125, 219, 446
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	6, 524
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	5 cut(s)	15, 20, 115, 131, 545
BspANI	GGCC	4 cut(s)	69, 125, 219, 446
BspEI	TCCGGA	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	416, 595
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	126, 244, 277
BssMI	GATC	2 cut(s)	6, 524
BssT1I	CCWWGG	3 cut(s)	126, 244, 277
Bst4CI	ACNGT	3 cut(s)	41, 319, 463
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	4 cut(s)	117, 160, 487, 562
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	301, 375
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	9, 527
BstMBI	GATC	2 cut(s)	6, 524
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	5 cut(s)	131, 136, 139, 167, 283
BsuRI	GGCC	4 cut(s)	69, 125, 219, 446
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	301, 375
Cac8I	GCNNGC	4 cut(s)	117, 160, 487, 562
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	67, 290
CpoI	CGGWCCG	1 cut(s)	290
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	506
CspAI	ACCGGT	1 cut(s)	287
CspI	CGGWCCG	1 cut(s)	290
CviAII	CATG	5 cut(s)	127, 380, 430, 535, 612
CviJI	RGCY	9 cut(s)	69, 125, 144, 162, 219, 274, 446, 581, 600
CviKI_1	RGCY	9 cut(s)	69, 125, 144, 162, 219, 274, 446, 581, 600
CviQI	GTAC	1 cut(s)	506
DpnI	GATC	2 cut(s)	8, 526
DpnII	GATC	2 cut(s)	6, 524
DrdI	GACNNNNNNGTC	1 cut(s)	288
DseDI	GACNNNNNNGTC	1 cut(s)	288
EaeI	YGGCCR	2 cut(s)	123, 217
Eco130I	CCWWGG	3 cut(s)	126, 244, 277
Eco47I	GGWCC	1 cut(s)	290
EcoT14I	CCWWGG	3 cut(s)	126, 244, 277
ErhI	CCWWGG	3 cut(s)	126, 244, 277
FaeI	CATG	5 cut(s)	130, 383, 433, 538, 615
FaiI	YATR	9 cut(s)	35, 80, 128, 264, 381, 431, 502, 536, 613
FaqI	GGGAC	2 cut(s)	280, 601
FatI	CATG	5 cut(s)	126, 379, 429, 534, 611
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	5 cut(s)	145, 150, 153, 156, 272
FokI	GGATG	2 cut(s)	308, 382
Fsp4HI	GCNGC	5 cut(s)	145, 150, 153, 156, 272
FspBI	CTAG	2 cut(s)	278, 486
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	145, 150, 153, 156, 272
GsuI	CTGGAG	1 cut(s)	574
HaeIII	GGCC	4 cut(s)	69, 125, 219, 446
HapII	CCGG	4 cut(s)	95, 220, 288, 293
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	130, 383, 433, 538, 615
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	364, 426
HpaII	CCGG	4 cut(s)	95, 220, 288, 293
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	4 cut(s)	293, 311, 430, 553
Hpy8I	GTNNAC	1 cut(s)	560
HpyAV	CCTTC	2 cut(s)	173, 457
HpyCH4III	ACNGT	3 cut(s)	41, 319, 463
HpyCH4V	TGCA	5 cut(s)	155, 299, 345, 438, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
Hsp92II	CATG	5 cut(s)	130, 383, 433, 538, 615
HspAI	GCGC	1 cut(s)	147
Kpn2I	TCCGGA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	6, 524
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	108, 233, 301, 306, 361, 397, 538, 576
Lsp1109I	GCAGC	5 cut(s)	131, 136, 139, 167, 283
LweI	GCATC	2 cut(s)	128, 286
MaeI	CTAG	2 cut(s)	278, 486
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	8, 526
MboI	GATC	2 cut(s)	6, 524
MboII	GAAGA	1 cut(s)	70
MfeI	CAATTG	3 cut(s)	71, 300, 402
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	6 cut(s)	71, 102, 256, 300, 402, 616
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	3 cut(s)	101, 104, 198
MroI	TCCGGA	1 cut(s)	292
MseI	TTAA	2 cut(s)	354, 619
MslI	CAYNNNNRTG	1 cut(s)	610
MspI	CCGG	4 cut(s)	95, 220, 288, 293
MunI	CAATTG	3 cut(s)	71, 300, 402
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	2 cut(s)	6, 524
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	5 cut(s)	130, 383, 433, 538, 615
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	457
NspV	TTCGAA	1 cut(s)	450
PagI	TCATGA	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	364, 426
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	5 cut(s)	146, 151, 154, 157, 273
PshBI	ATTAAT	1 cut(s)	354
PsiI	TTATAA	2 cut(s)	35, 80
PspPI	GGNCC	2 cut(s)	67, 290
PstI	CTGCAG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	610
Rsr2I	CGGWCCG	1 cut(s)	290
RsrII	CGGWCCG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	354, 619
SatI	GCNGC	5 cut(s)	145, 150, 153, 156, 272
Sau3AI	GATC	2 cut(s)	6, 524
Sau96I	GGNCC	2 cut(s)	67, 290
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	2 cut(s)	146, 276
SfaNI	GCATC	2 cut(s)	128, 286
SfcI	CTRYAG	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	450
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	610
Sse9I	AATT	6 cut(s)	71, 102, 256, 300, 402, 616
SsiI	CCGC	5 cut(s)	15, 20, 115, 131, 545
SspMI	CTAG	2 cut(s)	278, 486
StyI	CCWWGG	3 cut(s)	126, 244, 277
TaaI	ACNGT	3 cut(s)	41, 319, 463
TaqI	TCGA	2 cut(s)	180, 450
TasI	AATT	6 cut(s)	71, 102, 256, 300, 402, 616
TfiI	GAWTC	2 cut(s)	364, 426
Tru1I	TTAA	2 cut(s)	354, 619
Tru9I	TTAA	2 cut(s)	354, 619
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	5 cut(s)	144, 149, 152, 155, 271
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	71, 187, 396, 418
VneI	GTGCAC	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	290
VspI	ATTAAT	1 cut(s)	354
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	2 cut(s)	278, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.