Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005549

Physical Location & Seq

Genomic Coordinates Forward (+)

19538265 .. 19542439

Gene Structure 4175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTTTTCTTGCAGCTTCTGTGGGTTAACTTGATCATTATTACTCTAGGAGCAACTGAACCACCTACAGACGACCTTATGCATAGAACACCAGTTAGCAGAAGGGCACCTCTTATAACCAACATCATGTGGAGGAACATTATCGTTCAGGCTGTTTATCAAATTATTGTGCTCCTTGTCCTCGACTTTTTGGGTAATAGCATTCCTGGTCTGAAAGCGGACAACGTCCAAGCCGTTTCGTTGAAAAATACACTGATATTCAATGCTTTTGTCTTCTGCCAACCTGAAGAACTGAATTTCTTCAGTGGAGTGACCAAGAACTACCTCTTTATGGGAATAATAGGAGCCACATTTTTAAGTCAGTTTCTTGGGAGATTCACGAAAACAACGGTACTTGATTGGCAGCAATGGCTTATTTGCTTTGGTATTGCTATCGTCAGCTGGCCTCTTTCTATTGTTGGAAAACTGATTCCGGTCCCTAAGACTCCATTTTCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

9.1

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	4 - 156	6.2e-22	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005549)

Species	Orthologous Gene IDs
malus_domestica	MD12G1081700.v1.1
pyrus_communis	pycom12g06770 pycom13g21210 pycom14g06540 pycom14g06560 pycom16g20650
rosa_chinensis	RchiOBHm_Chr3g0483401 RchiOBHm_Chr6g0264021
rosa_laevigata	RLG00000023286
rosa_multiflora	Rmu_sc0006349.1_g000007 Rmu_sc0007793.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031200 Rroxscaffold_4G00300190 Rroxscaffold_4G00318650 Rroxscaffold_6G00398380
rosa_rugosa	Rorug03G0205700 Rorug03G0205800
rosa_samantha	Rh1DG033100 Rh2AG476200 Rh3AG254200 Rh3BG291300 Rh3CG288500 Rh3CG288600 Rh3DG284300 Rh3DG284400
rosa_wichuraiana	Rw0G023730 Rw3G022950 Rw3G022970 Rw6G011100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	106
AciI	CCGC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	2 cut(s)	286, 306
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	244, 262
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	2 cut(s)	16, 441
AluI	AGCT	2 cut(s)	16, 441
Alw21I	GWGCWC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	13, 403
ApoI	RAATTY	1 cut(s)	295
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	25, 415
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	207
BclI	TGATCA	1 cut(s)	33
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	2 cut(s)	14, 404
BlsI	GCNGC	2 cut(s)	15, 405
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	108, 346, 477
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	2 cut(s)	92, 496
Bse3DI	GCAATG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	92, 496
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	25, 415
BshFI	GGCC	1 cut(s)	445
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	109, 174
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	108, 346, 477
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	92, 496
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	480
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	25, 415
BstV2I	GAAGAC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	251, 310
Cac8I	GCNNGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	7 cut(s)	16, 152, 233, 347, 412, 441, 445
CviKI_1	RGCY	7 cut(s)	16, 152, 233, 347, 412, 441, 445
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	475
Eco57I	CTGAAG	2 cut(s)	286, 306
EcoRII	CCWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	84
FaeI	CATG	1 cut(s)	130
FaiI	YATR	5 cut(s)	80, 84, 116, 128, 332
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	14, 404
Fsp4HI	GCNGC	2 cut(s)	14, 404
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	2 cut(s)	14, 404
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	375, 469, 484
HpaI	GTTAAC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	473
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	13, 82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	33
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	50, 177, 344
LpnPI	CCDG	7 cut(s)	105, 134, 192, 219, 297, 427, 486
Lsp1109I	GCAGC	2 cut(s)	25, 415
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	265, 292, 299
MhlI	GDGCHC	2 cut(s)	109, 174
MluCI	AATT	2 cut(s)	162, 295
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	5 cut(s)	120, 126, 191, 335, 456
Mph1103I	ATGCAT	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	2 cut(s)	27, 356
MspA1I	CMGCKG	1 cut(s)	441
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	409
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	3 cut(s)	108, 346, 477
NmuCI	GTSAC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	375, 469
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	15, 405
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PsiI	TTATAA	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	3 cut(s)	108, 346, 477
PspPI	GGNCC	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	441
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	27, 356
SatI	GCNGC	2 cut(s)	14, 404
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	109, 174
SetI	ASST	8 cut(s)	18, 67, 78, 112, 228, 286, 327, 443
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	475
Sse9I	AATT	2 cut(s)	162, 295
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	183
TasI	AATT	2 cut(s)	162, 295
TfiI	GAWTC	2 cut(s)	375, 469
Tru1I	TTAA	2 cut(s)	27, 356
Tru9I	TTAA	2 cut(s)	27, 356
TscAI	CASTG	2 cut(s)	258, 310
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	2 cut(s)	13, 403
Tsp45I	GTSAC	1 cut(s)	310
TspRI	CASTG	2 cut(s)	258, 310
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.