Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007357

Physical Location & Seq

Genomic Coordinates Forward (+)

18524191 .. 18526943

Gene Structure 2753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGGAAGGCGAGGGGTCTAGTACAGAAGGGTTGCAAAGCTGTTCAGGATCTCAACTTGCTCAAGCTCCTCCAGTCCGAGATTCAGCACGAGCTTTCCTCCGACCCTTTTCCGACAAGCAGAAGCAGTTCATTGGGAGATTTTGTGGTGGAGTGGGATTCGCCGCAGACCCAAGATGTGGTGTTGAGGAGAAAGCTGGAGAGTGGTGAAGAGGTTGCTGTTTCAGCTATGTTGGGGCCCATCAGCCCTTGGGCCGCTGACAAAGAGGACAGTTTGTATCCAAGGCATGGTGAGATGAAGATATGTGTCAAGAAACCTGGGTTGAGCTCTCTACTGCAGTTTGACTGTGTTATTTTGGAGGACGGTTATGGGTTTAGAATCCGGGACTGCTATTATCTTCACTCACCAGCTCGTATCGGCCCTTCCGTCTATAGAGGTCGCTGCTTCCACGATCTGGATTCTAAATTACGTAGCGCACTCAAGGGATATCTTGCGGCCAAGGGTATTGGAGAAGAGCTTACGAACTGCCTCTTGCATTGCCTACACAAAAAAGAGCAAGGTCAATATGTAAACTGGCTACATAAGCTTGAATCATTTGTTGCAAAAGCAGCAAAACCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

208

Amino Acids

23.26

Weight (kDa)

8.42

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	24 - 200	1.2e-15	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600
fragaria_vesca	FvH4_6g24410
malus_domestica	MD14G1076800.v1.1 MD14G1125800.v1.1
prunus_persica	Prupe.7G054700_v2.0.a1 Prupe.7G054700_v2.0.a1
pyrus_communis	pycom14g06510
rosa_chinensis	RchiOBHm_Chr3g0483391
rosa_laevigata	RLG00000023287
rosa_multiflora	Rmu_sc0006349.1_g000008 Rmu_sc0009753.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398390
rosa_rugosa	Rorug03G0205700
rosa_samantha	Rh3AG254100 Rh3BG291200 Rh3CG288400 Rh3DG284200
rosa_wichuraiana	Rw0G023720 Rw0G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	178, 287, 454
AciI	CCGC	3 cut(s)	164, 255, 494
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	495
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	3 cut(s)	178, 287, 454
AgsI	TTSAA	1 cut(s)	590
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	9 cut(s)	41, 67, 94, 196, 227, 327, 410, 517, 586
AluI	AGCT	9 cut(s)	41, 67, 94, 196, 227, 327, 410, 517, 586
Alw21I	GWGCWC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	4 cut(s)	236, 252, 418, 495
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	441, 608
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	4 cut(s)	236, 237, 252, 419
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	3 cut(s)	218, 302, 396
BaeGI	GKGCMC	1 cut(s)	240
BanII	GRGCYC	2 cut(s)	240, 329
BarI	GAAGNNNNNNTAC	2 cut(s)	406, 438
BauI	CACGAG	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	428, 620
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	2 cut(s)	335, 430
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	5 cut(s)	164, 255, 442, 495, 609
BlsI	GCNGC	5 cut(s)	165, 256, 443, 496, 610
Bme1390I	CCNGG	2 cut(s)	318, 383
BmgT120I	GGNCC	4 cut(s)	236, 237, 252, 419
BmiI	GGNNCC	2 cut(s)	237, 238
BmrFI	CCNGG	2 cut(s)	318, 383
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	56, 218
BpuEI	CTTGAG	2 cut(s)	47, 464
BpuMI	CCSGG	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	470
BsaJI	CCNNGG	4 cut(s)	248, 281, 317, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 287, 454
Bse1I	ACTGG	2 cut(s)	73, 578
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	4 cut(s)	248, 281, 317, 498
BseLI	CCNNNNNNNGG	3 cut(s)	178, 287, 454
BseMI	GCAATG	1 cut(s)	535
BseNI	ACTGG	2 cut(s)	73, 578
BseRI	GAGGAG	2 cut(s)	59, 202
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	428, 620
BshFI	GGCC	4 cut(s)	238, 254, 420, 497
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	178, 287, 454
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	4 cut(s)	238, 254, 420, 497
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	240, 329
Bsp143I	GATC	2 cut(s)	49, 451
BspACI	CCGC	3 cut(s)	164, 255, 494
BspANI	GGCC	4 cut(s)	238, 254, 420, 497
BspLI	GGNNCC	2 cut(s)	237, 238
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	2 cut(s)	73, 578
BssECI	CCNNGG	4 cut(s)	248, 281, 317, 498
BssMI	GATC	2 cut(s)	49, 451
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	3 cut(s)	248, 281, 498
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	272, 347, 365
Bst6I	CTCTTC	2 cut(s)	204, 507
BstBAI	YACGTR	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	2 cut(s)	52, 454
BstMBI	GATC	2 cut(s)	49, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 583, 608
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	316, 381
BstSFI	CTRYAG	2 cut(s)	335, 430
BstSLI	GKGCMC	1 cut(s)	240
BstSNI	TACGTA	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	428, 620
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	4 cut(s)	238, 254, 420, 497
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	4 cut(s)	236, 237, 252, 419
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	287
CviQI	GTAC	1 cut(s)	23
DpnI	GATC	2 cut(s)	51, 453
DpnII	GATC	2 cut(s)	49, 451
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	2 cut(s)	204, 507
EarI	CTCTTC	2 cut(s)	204, 507
Ecl136II	GAGCTC	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	470
Eco130I	CCWWGG	3 cut(s)	248, 281, 498
Eco24I	GRGCYC	2 cut(s)	240, 329
Eco32I	GATATC	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	316
EcoRV	GATATC	1 cut(s)	488
EcoT14I	CCWWGG	3 cut(s)	248, 281, 498
EcoT38I	GRGCYC	2 cut(s)	240, 329
ErhI	CCWWGG	3 cut(s)	248, 281, 498
FaeI	CATG	1 cut(s)	290
FaiI	YATR	7 cut(s)	230, 288, 304, 369, 432, 567, 582
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	5 cut(s)	164, 255, 442, 495, 609
FriOI	GRGCYC	2 cut(s)	240, 329
Fsp4HI	GCNGC	5 cut(s)	164, 255, 442, 495, 609
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	164, 255, 442, 495, 609
GsuI	CTGGAG	2 cut(s)	56, 218
HaeIII	GGCC	4 cut(s)	238, 254, 420, 497
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	5 cut(s)	82, 158, 378, 458, 590
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	3 cut(s)	218, 302, 396
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	3 cut(s)	79, 103, 114
Hpy188III	TCNNGA	3 cut(s)	47, 310, 455
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	2 cut(s)	22, 432
HpyCH4III	ACNGT	3 cut(s)	272, 347, 365
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	4 cut(s)	36, 337, 535, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 583, 608
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	2 cut(s)	49, 451
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	9 cut(s)	32, 86, 182, 303, 330, 395, 420, 440, 559
Lsp1109I	GCAGC	2 cut(s)	428, 620
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	469
MalI	GATC	2 cut(s)	51, 453
MboI	GATC	2 cut(s)	49, 451
MboII	GAAGA	4 cut(s)	221, 310, 389, 524
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	240, 329
MluCI	AATT	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	126, 137
MnlI	CCTC	9 cut(s)	6, 80, 109, 180, 205, 259, 352, 428, 539
MroXI	GAANNNNTTC	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	2 cut(s)	318, 383
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	224, 583, 608
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	2 cut(s)	49, 451
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	237, 238
PciSI	GCTCTTC	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	5 cut(s)	82, 158, 378, 458, 590
PflMI	CCANNNNNTGG	3 cut(s)	178, 287, 454
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	5 cut(s)	165, 256, 443, 496, 610
Ppu21I	YACGTR	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	237, 238
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	4 cut(s)	236, 237, 252, 419
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	507
SatI	GCNGC	5 cut(s)	164, 255, 442, 495, 609
Sau3AI	GATC	2 cut(s)	49, 451
Sau96I	GGNCC	4 cut(s)	236, 237, 252, 419
ScrFI	CCNGG	2 cut(s)	318, 383
SduI	GDGCHC	2 cut(s)	240, 329
SfcI	CTRYAG	2 cut(s)	335, 430
SmlI	CTYRAG	2 cut(s)	62, 479
SmoI	CTYRAG	2 cut(s)	62, 479
SnaBI	TACGTA	1 cut(s)	470
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	3 cut(s)	164, 255, 494
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	316, 381
StyI	CCWWGG	3 cut(s)	248, 281, 498
TaaI	ACNGT	3 cut(s)	272, 347, 365
TaiI	ACGT	1 cut(s)	472
TasI	AATT	1 cut(s)	464
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	3 cut(s)	166, 257, 497
TfiI	GAWTC	5 cut(s)	82, 158, 378, 458, 590
TseI	GCWGC	2 cut(s)	441, 608
TspDTI	ATGAA	2 cut(s)	120, 311
TspGWI	ACGGA	1 cut(s)	415
Van91I	CCANNNNNTGG	3 cut(s)	178, 287, 454
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.