Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01098

Orthogroup ID

OG0007357

Physical Location & Seq

Genomic Coordinates Forward (+)

86455 .. 91492

Gene Structure 5038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCGGAAGGTGGGCAATTTAGTACGGAAGGGATGCAAAGCTGTTCAGGATCTGAACTTGGTCAAGCTCCTTCAGTCTGAAATTCAACATGAGCTTTCCTCTAACCATTATCCGACAAGCAGAAGCAGTTCATTGGGAGATTTTGTGGTGGAATGGGATTCACCGCAGTCCAAAGATGTGGTTTTGAGGAGAAAATTGGAGTCTGGTGAAGAGGTTGCTGTTTCAGCTATGTTGGGTCCCTTTTCTGATACCACTGACAGAGAGGAGTATTTGTATCCAAGGAATGTTGTGATGAAGGTATGCGTGAAGAAGCCTGGGTTGAGCTCTATACTGCAGTTTGACTGTGAGATATTTGAGCAAGACGGTATTGGTTCTGCGTTTGCAATCTGGGAATTCTATTATATTCAATCATCAGCTCGAATTGGCCCTTCGGTCTTTAGTCAGATATGCATTTACTGTATATCAACTTCAACAGATGGTGAAGATAAACTCTATGTGGATATCAAATTACATCTTGCACTCAAGGAATATCTAGTGGCCAAGGGTATTGGAGAAGAGCTTACTAACTTCCTCTTGCACCACCTACACAAAAAAGAACAAGGTCAATATGTGAACTGGCTACAGAAGCTTGAATCATTTGTTGCAAAACCAGAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

219

Amino Acids

24.84

Weight (kDa)

5.89

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	24 - 214	4.7e-11	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600
fragaria_vesca	FvH4_6g24410
malus_domestica	MD14G1076800.v1.1 MD14G1125800.v1.1
prunus_persica	Prupe.7G054700_v2.0.a1 Prupe.7G054700_v2.0.a1
pyrus_communis	pycom14g06510
rosa_chinensis	RchiOBHm_Chr3g0483391
rosa_laevigata	RLG00000023287
rosa_multiflora	Rmu_sc0006349.1_g000008 Rmu_sc0009753.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398390
rosa_rugosa	Rorug03G0205700
rosa_samantha	Rh3AG254100 Rh3BG291200 Rh3CG288400 Rh3DG284200
rosa_wichuraiana	Rw0G023720 Rw0G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 164
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	2 cut(s)	81, 392
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	1 cut(s)	24
AgsI	TTSAA	4 cut(s)	86, 407, 471, 632
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	8 cut(s)	41, 67, 94, 227, 324, 416, 559, 628
AluI	AGCT	8 cut(s)	41, 67, 94, 227, 324, 416, 559, 628
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	2 cut(s)	424, 537
ApoI	RAATTY	2 cut(s)	81, 392
ArsI	GACNNNNNNTTYG	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	236, 425
AsuHPI	GGTGA	3 cut(s)	153, 218, 491
AvaII	GGWCC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	451, 483
Bbv12I	GWGCWC	1 cut(s)	326
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	2 cut(s)	332, 620
BfuI	GTATCC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	236, 425
BmiI	GGNNCC	2 cut(s)	237, 238
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpuEI	CTTGAG	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	278, 314, 540
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 257, 287
Bse1I	ACTGG	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	278, 314, 540
BseGI	GGATG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	620
BseRI	GAGGAG	2 cut(s)	202, 278
BshFI	GGCC	2 cut(s)	426, 539
BsiHKAI	GWGCWC	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	426, 539
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	4, 164
BspANI	GGCC	2 cut(s)	426, 539
BspLI	GGNNCC	2 cut(s)	237, 238
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	620
BssECI	CCNNGG	3 cut(s)	278, 314, 540
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	2 cut(s)	278, 540
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	3 cut(s)	344, 365, 458
Bst6I	CTCTTC	2 cut(s)	204, 549
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 625
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	2 cut(s)	332, 620
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	426, 539
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	236, 425
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	89
CviQI	GTAC	1 cut(s)	23
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	2 cut(s)	204, 549
EarI	CTCTTC	2 cut(s)	204, 549
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	278, 540
Eco24I	GRGCYC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	278, 540
EcoT22I	ATGCAT	1 cut(s)	452
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	2 cut(s)	278, 540
FaeI	CATG	1 cut(s)	92
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	88
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	426, 539
Hin1II	CATG	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	4 cut(s)	158, 200, 632, 653
HphI	GGTGA	3 cut(s)	153, 218, 491
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	5 cut(s)	54, 79, 114, 247, 444
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	4 cut(s)	22, 80, 289, 438
HpyCH4III	ACNGT	3 cut(s)	344, 365, 458
HpyCH4V	TGCA	7 cut(s)	36, 334, 383, 450, 518, 577, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 625
Hsp92II	CATG	1 cut(s)	92
KflI	GGGWCCC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	49
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	6 cut(s)	32, 189, 300, 327, 373, 601
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	533
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	4 cut(s)	221, 319, 494, 566
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	6 cut(s)	16, 81, 194, 392, 420, 506
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	109, 180, 205, 256, 581
Mox20I	TGGCCA	1 cut(s)	539
Mph1103I	ATGCAT	1 cut(s)	452
MroXI	GAANNNNTTC	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	224, 625
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	237, 238
NsiI	ATGCAT	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	158, 632
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	237, 238
PspPI	GGNCC	2 cut(s)	236, 425
PspPPI	RGGWCCY	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	549
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	2 cut(s)	236, 425
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	2 cut(s)	332, 620
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	16, 81, 194, 392, 420, 506
SsiI	CCGC	2 cut(s)	4, 164
SspMI	CTAG	1 cut(s)	533
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	278, 540
TaaI	ACNGT	3 cut(s)	344, 365, 458
TaqI	TCGA	1 cut(s)	418
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	6 cut(s)	16, 81, 194, 392, 420, 506
TfiI	GAWTC	2 cut(s)	158, 632
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	120, 308
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	81, 392
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.