Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01098

Orthogroup ID

OG0007357

Physical Location & Seq

Genomic Coordinates Forward (+)

61319 .. 62037

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCGGAAGGTGGGCAATTTAGTACGGAAGGGATGCAAAGCTGTTCAGGATCTGAACTTGGTCAAGCTGCTCCAGTCTGAAATTCAACATGAGCTTTCCTCAAACCATTATCCGACAAGCAGAAGCAGTTCATTGGGAGATTTTGTGGTGGAATGGGATTCCCCGCAGTCCAAAGATGTGGTTTTGAGGAGAAAATTGGAGTCTGGAGAAGAGGTTGCTGTTTCAGCTATGTTGGGTCCCTTTTCTGATACCACTGACAGAGAGGAGTATTTGTATCCAAGGGATGTTGTGATGAAGGTATGCGTGAAGAAGCCTGGGTTAGTCAGATATGCATTTACTGTATATCAACTTCAACAGATGGTGAAGATAAACTGTAGTATCACTTCTTTTGGGGTGGGGGTTGGTGGCCAGAAACTTTTGCTTCTTGCCATTATTTTCAGTTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

149

Amino Acids

16.64

Weight (kDa)

9.01

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600
fragaria_vesca	FvH4_6g24410
malus_domestica	MD14G1076800.v1.1 MD14G1125800.v1.1
prunus_persica	Prupe.7G054700_v2.0.a1 Prupe.7G054700_v2.0.a1
pyrus_communis	pycom14g06510
rosa_chinensis	RchiOBHm_Chr3g0483391
rosa_laevigata	RLG00000023287
rosa_multiflora	Rmu_sc0006349.1_g000008 Rmu_sc0009753.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398390
rosa_rugosa	Rorug03G0205700
rosa_samantha	Rh3AG254100 Rh3BG291200 Rh3CG288400 Rh3DG284200
rosa_wichuraiana	Rw0G023720 Rw0G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 164
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	81
AfaI	GTAC	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	86, 353
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	41, 67, 94, 227
AluI	AGCT	4 cut(s)	41, 67, 94, 227
AlwI	GGATC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	236
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BalI	TGGCCA	1 cut(s)	408
BarI	GAAGNNNNNNTAC	4 cut(s)	333, 365, 367, 399
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	373
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	237, 238
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	56, 225
BsaJI	CCNNGG	2 cut(s)	278, 314
BsaXI	ACNNNNNCTCC	6 cut(s)	129, 159, 198, 228, 257, 287
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	278, 314
BseGI	GGATG	2 cut(s)	38, 289
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	2 cut(s)	202, 278
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	4, 164
BspANI	GGCC	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	237, 238
BspPI	GGATC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	278, 314
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	340, 374
Bst6I	CTCTTC	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	38, 289
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	38, 289
BtsIMutI	CAGTG	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	6 cut(s)	41, 67, 94, 227, 313, 408
CviKI_1	RGCY	6 cut(s)	41, 67, 94, 227, 313, 408
CviQI	GTAC	1 cut(s)	23
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	90, 230, 301, 330, 343
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	88
FauI	CCCGC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	2 cut(s)	45, 296
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	2 cut(s)	56, 225
HaeIII	GGCC	1 cut(s)	408
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	2 cut(s)	158, 200
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	5 cut(s)	54, 79, 114, 247, 326
Hpy188III	TCNNGA	2 cut(s)	47, 204
HpyAV	CCTTC	2 cut(s)	22, 289
HpyCH4III	ACNGT	2 cut(s)	340, 374
HpyCH4V	TGCA	2 cut(s)	36, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	92
KflI	GGGWCCC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	6 cut(s)	32, 86, 189, 300, 327, 422
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	23
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	221, 319, 376
MflI	RGATCY	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	3 cut(s)	16, 81, 194
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	4 cut(s)	109, 180, 205, 256
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	1 cut(s)	448
Msp20I	TGGCCA	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	237, 238
NsiI	ATGCAT	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	237, 238
PspPI	GGNCC	1 cut(s)	236
PspPPI	RGGWCCY	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	448
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	7 cut(s)	12, 43, 69, 96, 216, 229, 300
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	3 cut(s)	16, 81, 194
SsiI	CCGC	2 cut(s)	4, 164
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	340, 374
TasI	AATT	3 cut(s)	16, 81, 194
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	448
Tru9I	TTAA	1 cut(s)	448
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	120, 308
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.