Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007357

Physical Location & Seq

Genomic Coordinates Reverse (-)

21179399 .. 21186707

Gene Structure 7309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCGGAAGGTGGGCAATTTAGTACGGAAGGGATGCAAAGCTGTACAGGATCTGAACTTGGTCAAGCTCCTCCAGTCTGAAATTCAACATGAGCTTTCCTCTAACCATTATCCGACAAGCAGAAGCAGTTCATTGGGAGATTTTGTGGTGGAATGGGATTCACCGCAGTCCAAAGATGTGGTTTTGAGGAGAAAATTGGAGTCTGGTGAAGAGGTTGCTGTTTCAGCTATGTTGGGTCCCTTTTCTGATACCACTGACAGAGAGGAGTATTTGTATCCAAGGGATGTTGTGATGAAGGTATGCGTGACGAAGCCTGGGTTGAGCTCTATACTGCAGTTTGACTGTGAGATATTTGAGCAAGACGGTATTGGTTCTTCGCTTGCAATCTGGGAATTCTATTATATTCAATCACCAGCGCGAACTGGCCCTTCGGTCTATAGGGGTCCCTCATTCAGCTATGTGGATATCAAATTACATCTTGCACTCAAGGAATATCTAGTGGCCAAGGGTATTGGAGAAGAGCTTACTAACTTCCTCTTGCACCACCTACACAAAAAAGAACAAGCGGTGAAGAACAGTAATAATGGAGGAATAAATTGGATGCTGAGCAGAAGCACCTTCCCGCGGATTCTCGAGTTAAATGGAGGAAAGCAGTCGCTCTTCTCGTCAAGAACCGTTCTAGAAGGTTCCGTGGTGTCGTTGATCTGGCAAACCAGATACAGCTATTTGAATTCTAGATTACAAAAAATGCAGTCCACGAATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

256

Amino Acids

28.84

Weight (kDa)

8.65

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	24 - 188	6.8e-10	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600
fragaria_vesca	FvH4_6g24410
malus_domestica	MD14G1076800.v1.1 MD14G1125800.v1.1
prunus_persica	Prupe.7G054700_v2.0.a1 Prupe.7G054700_v2.0.a1
pyrus_communis	pycom14g06510
rosa_chinensis	RchiOBHm_Chr3g0483391
rosa_laevigata	RLG00000023287
rosa_multiflora	Rmu_sc0006349.1_g000008 Rmu_sc0009753.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398390
rosa_rugosa	Rorug03G0205700
rosa_samantha	Rh3AG254100 Rh3BG291200 Rh3CG288400 Rh3DG284200
rosa_wichuraiana	Rw0G023720 Rw0G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	418, 625
AciI	CCGC	5 cut(s)	4, 164, 566, 623, 625
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	3 cut(s)	81, 392, 730
AfaI	GTAC	2 cut(s)	24, 45
AfiI	CCNNNNNNNGG	1 cut(s)	624
AgsI	TTSAA	3 cut(s)	86, 407, 730
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	8 cut(s)	41, 67, 94, 227, 324, 456, 523, 723
AluI	AGCT	8 cut(s)	41, 67, 94, 227, 324, 456, 523, 723
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	52
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	424, 501
ApoI	RAATTY	3 cut(s)	81, 392, 730
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	236, 425, 443
AsuHPI	GGTGA	4 cut(s)	153, 218, 402, 580
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	236, 443
BalI	TGGCCA	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
Bbv12I	GWGCWC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	4 cut(s)	497, 680, 735, 766
BfmI	CTRYAG	2 cut(s)	332, 436
BfuI	GTATCC	1 cut(s)	285
BlpI	GCTNAGC	1 cut(s)	605
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	2 cut(s)	236, 443
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	3 cut(s)	236, 425, 443
BmiI	GGNNCC	5 cut(s)	237, 238, 444, 445, 688
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	23, 591
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	470
BsaJI	CCNNGG	5 cut(s)	278, 314, 504, 623, 690
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	624
Bse1I	ACTGG	2 cut(s)	73, 427
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	5 cut(s)	278, 314, 504, 623, 690
BseGI	GGATG	3 cut(s)	38, 289, 606
BseLI	CCNNNNNNNGG	1 cut(s)	624
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	73, 427
BseRI	GAGGAG	3 cut(s)	59, 202, 278
Bsh1236I	CGCG	2 cut(s)	418, 625
BshFI	GGCC	2 cut(s)	426, 503
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	222, 429
BslI	CCNNNNNNNGG	1 cut(s)	624
BsmFI	GGGAC	2 cut(s)	222, 429
BsnI	GGCC	2 cut(s)	426, 503
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	49, 702
Bsp1720I	GCTNAGC	1 cut(s)	605
BspACI	CCGC	5 cut(s)	4, 164, 566, 623, 625
BspANI	GGCC	2 cut(s)	426, 503
BspCNI	CTCAG	1 cut(s)	597
BspFNI	CGCG	2 cut(s)	418, 625
BspLI	GGNNCC	5 cut(s)	237, 238, 444, 445, 688
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	57
BspQI	GCTCTTC	2 cut(s)	513, 665
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	73, 427
BssECI	CCNNGG	5 cut(s)	278, 314, 504, 623, 690
BssMI	GATC	2 cut(s)	49, 702
BssT1I	CCWWGG	2 cut(s)	278, 504
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	4 cut(s)	344, 365, 578, 676
Bst6I	CTCTTC	3 cut(s)	204, 513, 665
BstAUI	TGTACA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	605
BstDSI	CCRYGG	2 cut(s)	623, 690
BstF5I	GGATG	3 cut(s)	38, 289, 606
BstFNI	CGCG	2 cut(s)	418, 625
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	2 cut(s)	52, 705
BstMBI	GATC	2 cut(s)	49, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	2 cut(s)	332, 436
BstUI	CGCG	2 cut(s)	418, 625
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	426, 503
BtgI	CCRYGG	2 cut(s)	623, 690
BtsCI	GGATG	3 cut(s)	38, 289, 606
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	236, 425, 443
Cfr42I	CCGCGG	1 cut(s)	626
Csp6I	GTAC	2 cut(s)	23, 44
CviAII	CATG	1 cut(s)	89
CviQI	GTAC	2 cut(s)	23, 44
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	2 cut(s)	51, 704
DpnII	GATC	2 cut(s)	49, 702
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	3 cut(s)	204, 513, 665
EarI	CTCTTC	3 cut(s)	204, 513, 665
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	278, 504
Eco24I	GRGCYC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	236, 443
Eco53kI	GAGCTC	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	632
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	2 cut(s)	236, 443
EcoRI	GAATTC	2 cut(s)	392, 730
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	2 cut(s)	278, 504
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	2 cut(s)	278, 504
FaeI	CATG	1 cut(s)	92
FaiI	YATR	7 cut(s)	90, 230, 301, 329, 402, 438, 459
FaqI	GGGAC	2 cut(s)	222, 429
FatI	CATG	1 cut(s)	88
FauI	CCCGC	1 cut(s)	630
FokI	GGATG	3 cut(s)	45, 296, 613
FriOI	GRGCYC	1 cut(s)	326
FspBI	CTAG	4 cut(s)	497, 680, 735, 766
GlaI	GCGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	426, 503
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	3 cut(s)	158, 200, 628
HphI	GGTGA	4 cut(s)	153, 218, 402, 580
Hpy166II	GTNNAC	1 cut(s)	756
Hpy188I	TCNGA	4 cut(s)	54, 79, 114, 247
Hpy188III	TCNNGA	4 cut(s)	632, 669, 680, 735
Hpy8I	GTNNAC	1 cut(s)	756
HpyAV	CCTTC	5 cut(s)	22, 289, 438, 628, 677
HpyCH4III	ACNGT	4 cut(s)	344, 365, 578, 676
HpyCH4V	TGCA	6 cut(s)	36, 334, 383, 482, 541, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	605
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	416
KflI	GGGWCCC	2 cut(s)	236, 443
KspI	CCGCGG	1 cut(s)	626
Kzo9I	GATC	2 cut(s)	49, 702
LguI	GCTCTTC	2 cut(s)	513, 665
LmnI	GCTCC	1 cut(s)	72
LweI	GCATC	2 cut(s)	23, 591
MaeI	CTAG	4 cut(s)	497, 680, 735, 766
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	51, 704
MboI	GATC	2 cut(s)	49, 702
MboII	GAAGA	5 cut(s)	221, 366, 530, 583, 652
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	7 cut(s)	16, 81, 194, 392, 470, 595, 730
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	9 cut(s)	80, 109, 180, 205, 256, 457, 545, 581, 638
Mox20I	TGGCCA	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	1 cut(s)	638
Msp20I	TGGCCA	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	2 cut(s)	418, 625
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	2 cut(s)	49, 702
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	5 cut(s)	237, 238, 444, 445, 688
NmuCI	GTSAC	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	632
PciSI	GCTCTTC	2 cut(s)	513, 665
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	158, 628
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	2 cut(s)	236, 443
Psp124BI	GAGCTC	1 cut(s)	326
Psp5II	RGGWCCY	2 cut(s)	236, 443
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	5 cut(s)	237, 238, 444, 445, 688
PspPI	GGNCC	3 cut(s)	236, 425, 443
PspPPI	RGGWCCY	2 cut(s)	236, 443
PstI	CTGCAG	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	2 cut(s)	24, 45
RsaNI	GTAC	2 cut(s)	23, 44
SacI	GAGCTC	1 cut(s)	326
SacII	CCGCGG	1 cut(s)	626
SapI	GCTCTTC	2 cut(s)	513, 665
SaqAI	TTAA	1 cut(s)	638
Sau3AI	GATC	2 cut(s)	49, 702
Sau96I	GGNCC	3 cut(s)	236, 425, 443
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	2 cut(s)	23, 591
SfcI	CTRYAG	2 cut(s)	332, 436
Sfr274I	CTCGAG	1 cut(s)	632
Sfr303I	CCGCGG	1 cut(s)	626
SgrBI	CCGCGG	1 cut(s)	626
SinI	GGWCC	2 cut(s)	236, 443
SlaI	CTCGAG	1 cut(s)	632
SmlI	CTYRAG	2 cut(s)	485, 632
SmoI	CTYRAG	2 cut(s)	485, 632
Sse9I	AATT	7 cut(s)	16, 81, 194, 392, 470, 595, 730
SsiI	CCGC	5 cut(s)	4, 164, 566, 623, 625
SspMI	CTAG	4 cut(s)	497, 680, 735, 766
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	278, 504
TaaI	ACNGT	4 cut(s)	344, 365, 578, 676
TaqI	TCGA	1 cut(s)	633
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	7 cut(s)	16, 81, 194, 392, 470, 595, 730
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	158, 628
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	120, 308
TspGWI	ACGGA	2 cut(s)	40, 679
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	236, 443
XapI	RAATTY	3 cut(s)	81, 392, 730
XbaI	TCTAGA	2 cut(s)	679, 734
XhoI	CTCGAG	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	4 cut(s)	497, 680, 735, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.