Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007357

Physical Location & Seq

Genomic Coordinates Forward (+)

6446595 .. 6448697

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCGAAGGCGACGGCTCTGGCGCGGCAGGGTCTCAAAGCTCTCAAACAATGCAACTTGCTCAGGGCTTTGCAGTCCGAGATACAATACGAGCTTTCCTCTAATCCCTTTCAGGAAAGAGGAAGCTCTTCGTTGGGTGATTTTGTGGTGGAGTGGGATTCACCACGGTCCCAAGATGTGGTTTTGAGGAGGAAATTTGAGAGCGGTGAGGAGGTTGCTGTTTCTGCTTTGTTGGGTCCCTTTTACTCTGAGGAAGGCGCTGTTGAAAAATACAGCGAGTATCCGGGGGAAGCTTTGATGAAGGTATGTGTGAAGAAGCCTGGTTTGAGCTCAATGCTGCAGTTCGATTGCAGTGTTTTCGAGATTATCGGTTCTGGGTCCGTATTCAACATCCATAATGCCCATATTCTTCAACCATCAGCTGGTCTTGGCCCTTCTGTCTACAGAGGCCCCGCATTCAGGGCAGTTCTTTGGATCGATCAGTTACAAGATGCCCTCAAGAAATATCTACAATCCAAGGGCATTGGAGAAAGCCTGACTAACTTCCTCCTCCACCACCTGCACAAAAAAGAGCACGGTCAATACGTGAACTGGCTGCACATACTTGAATCTCATGTTGCAAAACCGAAACCAGAGAGTGACAGAATCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

218

Amino Acids

24.21

Weight (kDa)

7.09

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600
fragaria_vesca	FvH4_6g24410
malus_domestica	MD14G1076800.v1.1 MD14G1125800.v1.1
prunus_persica	Prupe.7G054700_v2.0.a1 Prupe.7G054700_v2.0.a1
pyrus_communis	pycom14g06510
rosa_chinensis	RchiOBHm_Chr3g0483391
rosa_laevigata	RLG00000023287
rosa_multiflora	Rmu_sc0006349.1_g000008 Rmu_sc0009753.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398390
rosa_rugosa	Rorug03G0205700
rosa_samantha	Rh3AG254100 Rh3BG291200 Rh3CG288400 Rh3DG284200
rosa_wichuraiana	Rw0G023720 Rw0G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	567
Acc36I	ACCTGC	1 cut(s)	567
AccB7I	CCANNNNNTGG	2 cut(s)	178, 422
AccBSI	CCGCTC	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	25
AciI	CCGC	3 cut(s)	25, 204, 453
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	1 cut(s)	194
AfiI	CCNNNNNNNGG	3 cut(s)	178, 422, 459
AgsI	TTSAA	4 cut(s)	266, 388, 413, 608
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	6 cut(s)	41, 94, 126, 293, 330, 422
AluI	AGCT	6 cut(s)	41, 94, 126, 293, 330, 422
Alw21I	GWGCWC	2 cut(s)	332, 576
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	2 cut(s)	430, 448
ApeKI	GCWGC	2 cut(s)	337, 595
ApoI	RAATTY	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	2 cut(s)	25, 260
AspS9I	GGNCC	5 cut(s)	168, 236, 378, 431, 449
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	149, 153, 218
AvaII	GGWCC	3 cut(s)	168, 236, 378
BanII	GRGCYC	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	332, 576
BbvI	GCAGC	2 cut(s)	324, 582
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	38
BfmI	CTRYAG	2 cut(s)	338, 442
BfoI	RGCGCY	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	291
BisI	GCNGC	3 cut(s)	26, 338, 596
BlsI	GCNGC	3 cut(s)	27, 339, 597
Bme1390I	CCNGG	2 cut(s)	285, 321
Bme18I	GGWCC	3 cut(s)	168, 236, 378
BmgT120I	GGNCC	5 cut(s)	168, 236, 378, 431, 449
BmiI	GGNNCC	5 cut(s)	170, 237, 238, 379, 451
BmrFI	CCNGG	2 cut(s)	285, 321
BmsI	GCATC	1 cut(s)	481
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	586
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	164, 284, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 422, 459
Bse1I	ACTGG	2 cut(s)	596, 649
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	164, 284, 516
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	178, 422, 459
BseMII	CTCAG	2 cut(s)	76, 240
BseNI	ACTGG	2 cut(s)	596, 649
BseRI	GAGGAG	3 cut(s)	202, 224, 539
BseXI	GCAGC	2 cut(s)	324, 582
BsgI	GTGCAG	2 cut(s)	545, 581
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	432, 450
BshVI	ATCGAT	1 cut(s)	477
BsiHKAI	GWGCWC	2 cut(s)	332, 576
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	154, 222
BslI	CCNNNNNNNGG	3 cut(s)	178, 422, 459
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	154, 222
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	432, 450
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	332, 576
Bsp143I	GATC	2 cut(s)	474, 478
BspACI	CCGC	3 cut(s)	25, 204, 453
BspANI	GGCC	2 cut(s)	432, 450
BspCNI	CTCAG	2 cut(s)	75, 241
BspDI	ATCGAT	1 cut(s)	477
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	5 cut(s)	170, 237, 238, 379, 451
BspMAI	CTGCAG	1 cut(s)	342
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	482
BspQI	GCTCTTC	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	596, 649
BssECI	CCNNGG	3 cut(s)	164, 284, 516
BssMI	GATC	2 cut(s)	474, 478
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	168, 578
Bst6I	CTCTTC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	586
BstDEI	CTNAG	2 cut(s)	62, 249
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	25, 260
BstKTI	GATC	2 cut(s)	477, 481
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	2 cut(s)	474, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 461
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	283, 319
BstSFI	CTRYAG	2 cut(s)	338, 442
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	324, 582
Bsu15I	ATCGAT	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	432, 450
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	567
CfoI	GCGC	2 cut(s)	25, 260
Cfr13I	GGNCC	5 cut(s)	168, 236, 378, 431, 449
ClaI	ATCGAT	1 cut(s)	477
CviAII	CATG	1 cut(s)	614
DdeI	CTNAG	2 cut(s)	62, 249
DpnI	GATC	2 cut(s)	476, 480
DpnII	GATC	2 cut(s)	474, 478
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	3 cut(s)	168, 236, 378
Eco53kI	GAGCTC	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	330
EcoO109I	RGGNCCY	2 cut(s)	236, 449
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	1 cut(s)	617
FaiI	YATR	5 cut(s)	307, 396, 405, 602, 615
FaqI	GGGAC	2 cut(s)	154, 222
FatI	CATG	1 cut(s)	613
FauI	CCCGC	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	26, 338, 596
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	3 cut(s)	26, 338, 596
GlaI	GCGC	2 cut(s)	24, 259
GluI	GCNGC	3 cut(s)	26, 338, 596
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	432, 450
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	2 cut(s)	25, 260
Hin1II	CATG	1 cut(s)	617
Hin6I	GCGC	2 cut(s)	23, 258
HinP1I	GCGC	2 cut(s)	23, 258
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	158, 608, 645
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	3 cut(s)	149, 153, 218
Hpy166II	GTNNAC	2 cut(s)	442, 589
Hpy188I	TCNGA	2 cut(s)	79, 250
Hpy188III	TCNNGA	3 cut(s)	113, 361, 499
Hpy8I	GTNNAC	2 cut(s)	442, 589
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	248, 295, 444
HpyCH4III	ACNGT	2 cut(s)	168, 578
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	7 cut(s)	54, 73, 340, 351, 562, 598, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 461
HpyF3I	CTNAG	2 cut(s)	62, 249
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	1 cut(s)	617
HspAI	GCGC	2 cut(s)	23, 258
KflI	GGGWCCC	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	474, 478
LguI	GCTCTTC	1 cut(s)	133
Lsp1109I	GCAGC	2 cut(s)	324, 582
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	483, 638
MalI	GATC	2 cut(s)	476, 480
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	2 cut(s)	474, 478
MboII	GAAGA	3 cut(s)	120, 325, 401
MhlI	GDGCHC	2 cut(s)	332, 576
MluCI	AATT	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	285, 321
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	224, 461
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	2 cut(s)	474, 478
NlaIII	CATG	1 cut(s)	617
NlaIV	GGNNCC	5 cut(s)	170, 237, 238, 379, 451
NmuCI	GTSAC	1 cut(s)	638
PaqCI	CACCTGC	1 cut(s)	567
PciSI	GCTCTTC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	158, 608, 645
PflMI	CCANNNNNTGG	2 cut(s)	178, 422
PkrI	GCNGC	3 cut(s)	27, 339, 597
Ppu21I	YACGTR	1 cut(s)	586
PpuMI	RGGWCCY	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	5 cut(s)	170, 237, 238, 379, 451
PspPI	GGNCC	5 cut(s)	168, 236, 378, 431, 449
PspPPI	RGGWCCY	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	133
SatI	GCNGC	3 cut(s)	26, 338, 596
Sau3AI	GATC	2 cut(s)	474, 478
Sau96I	GGNCC	5 cut(s)	168, 236, 378, 431, 449
ScrFI	CCNGG	2 cut(s)	285, 321
SduI	GDGCHC	2 cut(s)	332, 576
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	2 cut(s)	338, 442
SinI	GGWCC	3 cut(s)	168, 236, 378
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	3 cut(s)	25, 204, 453
SstI	GAGCTC	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	283, 319
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	168, 578
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	4 cut(s)	5, 345, 360, 477
TasI	AATT	1 cut(s)	194
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	158, 608, 645
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	2 cut(s)	337, 595
Tsp45I	GTSAC	1 cut(s)	638
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	2 cut(s)	178, 422
VpaK11BI	GGWCC	3 cut(s)	168, 236, 378
XapI	RAATTY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.