Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007357

Physical Location & Seq

Genomic Coordinates Reverse (-)

20261795 .. 20263705

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCGGAAGGTGGGCAATTTAGTACGGAAGGGATGCAAAGCTGTTCAGGATCTGAACTTGGTCAAGCTCCTCCAGTCTGAAATTCAACATGAGCTTTCCACTAACCATTATCCGACAAGCAGAAGCAGTTCATTGGGAGATTTTGTGGTGGAATGGGATTCACAGCAGTCCAAAGATGTGGTTTTGAGGAGAAAATTGGAGTCTGGTGAAGAGGTTGCTGTTTCAGCTATGTTGGGTCCCTTTTCTGATATCACTGACAGAGAGGAGTATTTGTATCCAAGGGATGTTGTGATGAAGATTTGCGTGAAGAAGCCTGGGTTGAGCTCTATACTGCAGTTTGACTGTGAGATATTTGAGCAAGACGGTATTGGTTCTTCGTTTGCAATCTGGGAATTCTATTATATTCAATCACCAGCTCGAATTGGCCCTTCGGTCTATAGGGGTCCCTCATTCAGGAAACGCTGGAAATACCTCTTTTGGTTGCTATTAGAGTACCCTGCAGTTCTGAAGAGAAGTAGAAAGCCAAAAGTAAGAGGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

180

Amino Acids

20.78

Weight (kDa)

9.34

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600
fragaria_vesca	FvH4_6g24410
malus_domestica	MD14G1076800.v1.1 MD14G1125800.v1.1
prunus_persica	Prupe.7G054700_v2.0.a1 Prupe.7G054700_v2.0.a1
pyrus_communis	pycom14g06510
rosa_chinensis	RchiOBHm_Chr3g0483391
rosa_laevigata	RLG00000023287
rosa_multiflora	Rmu_sc0006349.1_g000008 Rmu_sc0009753.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398390
rosa_rugosa	Rorug03G0205700
rosa_samantha	Rh3AG254100 Rh3BG291200 Rh3CG288400 Rh3DG284200
rosa_wichuraiana	Rw0G023720 Rw0G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	81, 392
AcuI	CTGAAG	1 cut(s)	527
AfaI	GTAC	2 cut(s)	24, 494
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgsI	TTSAA	2 cut(s)	86, 407
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	6 cut(s)	41, 67, 94, 227, 324, 416
AluI	AGCT	6 cut(s)	41, 67, 94, 227, 324, 416
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	1 cut(s)	424
ApoI	RAATTY	2 cut(s)	81, 392
Asp700I	GAANNNNTTC	1 cut(s)	127
AspS9I	GGNCC	3 cut(s)	236, 425, 443
AsuHPI	GGTGA	2 cut(s)	218, 402
AvaII	GGWCC	2 cut(s)	236, 443
BanII	GRGCYC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
Bbv12I	GWGCWC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	541
BfmI	CTRYAG	3 cut(s)	332, 436, 498
BfuI	GTATCC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	2 cut(s)	236, 443
BmgT120I	GGNCC	3 cut(s)	236, 425, 443
BmiI	GGNNCC	4 cut(s)	237, 238, 444, 445
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	278, 314
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	278, 314
BseGI	GGATG	2 cut(s)	38, 289
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	3 cut(s)	59, 202, 278
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	222, 429
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	222, 429
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	426
BspLI	GGNNCC	4 cut(s)	237, 238, 444, 445
BspMAI	CTGCAG	2 cut(s)	336, 502
BspPI	GGATC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	278, 314
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	344, 365
Bst6I	CTCTTC	2 cut(s)	204, 503
BstENI	CCTNNNNNAGG	1 cut(s)	451
BstF5I	GGATG	2 cut(s)	38, 289
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	3 cut(s)	332, 436, 498
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	38, 289
BtsIMutI	CAGTG	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	236, 425, 443
Csp6I	GTAC	2 cut(s)	23, 493
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	9 cut(s)	41, 67, 94, 227, 313, 324, 416, 426, 523
CviKI_1	RGCY	9 cut(s)	41, 67, 94, 227, 313, 324, 416, 426, 523
CviQI	GTAC	2 cut(s)	23, 493
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	204, 503
EarI	CTCTTC	2 cut(s)	204, 503
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	236, 443
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	451
EcoO109I	RGGNCCY	2 cut(s)	236, 443
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	90, 230, 329, 402, 438
FaqI	GGGAC	2 cut(s)	222, 429
FatI	CATG	1 cut(s)	88
FokI	GGATG	2 cut(s)	45, 296
FriOI	GRGCYC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	541
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	426
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	3 cut(s)	158, 200, 537
HphI	GGTGA	2 cut(s)	218, 402
Hpy188I	TCNGA	5 cut(s)	54, 79, 114, 247, 507
Hpy188III	TCNNGA	2 cut(s)	47, 454
HpyAV	CCTTC	2 cut(s)	22, 438
HpyCH4III	ACNGT	2 cut(s)	344, 365
HpyCH4V	TGCA	4 cut(s)	36, 334, 383, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	92
KflI	GGGWCCC	2 cut(s)	236, 443
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	72
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	541
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	5 cut(s)	221, 307, 319, 366, 520
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	5 cut(s)	16, 81, 194, 392, 420
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	80, 180, 205, 256, 457, 482, 527
MroXI	GAANNNNTTC	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	4 cut(s)	237, 238, 444, 445
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	2 cut(s)	236, 443
Psp124BI	GAGCTC	1 cut(s)	326
Psp5II	RGGWCCY	2 cut(s)	236, 443
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	4 cut(s)	237, 238, 444, 445
PspPI	GGNCC	3 cut(s)	236, 425, 443
PspPPI	RGGWCCY	2 cut(s)	236, 443
PstI	CTGCAG	2 cut(s)	336, 502
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	2 cut(s)	24, 494
RsaNI	GTAC	2 cut(s)	23, 493
SacI	GAGCTC	1 cut(s)	326
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	3 cut(s)	236, 425, 443
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	9 cut(s)	12, 43, 69, 96, 216, 229, 326, 418, 474
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	3 cut(s)	332, 436, 498
SinI	GGWCC	2 cut(s)	236, 443
Sse9I	AATT	5 cut(s)	16, 81, 194, 392, 420
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	541
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	344, 365
TaqI	TCGA	1 cut(s)	418
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	5 cut(s)	16, 81, 194, 392, 420
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	120, 308
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	236, 443
XagI	CCTNNNNNAGG	1 cut(s)	451
XapI	RAATTY	2 cut(s)	81, 392
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.