Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007357

Physical Location & Seq

Genomic Coordinates Forward (+)

28953176 .. 28957984

Gene Structure 4809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG284200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCGGAAGGTGGGCAATTTAGTAAGGAAGGGATGCAAAGCTGTTCAGGATCTGAACTTGGTCAAGCTCCTCCAGTCTGAAATTCAACATGAGCTTTCCTCAAACCATTATCCGACAAGCAGAAGCAGTTCATTGGGAGATTTTGTGGTGGAATGGGATTCCCCGCAGTCCAAAGATGTGGTTTTGAGGAGAAAATTGGAGTCTGGAGAAGAGGTTGCTGTTTCAGCTATGTTGGGTCCCTTTTCTGATACCACTGACAGAGAGGAGTATTTGTATCCAAGGGATGTTGTGATGAAGGTATGCGTGAAGAAGCCTGGGTTGAGCTCTATACTGCAGTTTGACTGTGAGATATTTGAGCAAGACGGTATTGGTTCTTCGTTTGCAATCTGGGAATTCTATTATATTCAATCACCAGCGCGAACTGGCCCTTCGGTCTATAGGGGTCCCTCATTCAGGTTAGTCAGATATGCATTTACTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006091 GO:0006417 GO:0008150 GO:0008152 GO:0008494 GO:0009060 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015980 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045333 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0080090 GO:0090079 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

160

Amino Acids

18.14

Weight (kDa)

6.73

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600 AT2G41600
fragaria_vesca	FvH4_6g24410
malus_domestica	MD14G1076800.v1.1 MD14G1125800.v1.1
prunus_persica	Prupe.7G054700_v2.0.a1 Prupe.7G054700_v2.0.a1
pyrus_communis	pycom14g06510
rosa_chinensis	RchiOBHm_Chr3g0483391
rosa_laevigata	RLG00000023287
rosa_multiflora	Rmu_sc0006349.1_g000008 Rmu_sc0009753.1_g000002
rosa_roxburghii	Rroxscaffold_6G00398390
rosa_rugosa	Rorug03G0205700
rosa_samantha	Rh3AG254100 Rh3BG291200 Rh3CG288400 Rh3DG284200
rosa_wichuraiana	Rw0G023720 Rw0G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	418
AciI	CCGC	2 cut(s)	4, 164
AclWI	GGATC	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	81, 392
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgsI	TTSAA	2 cut(s)	86, 407
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	5 cut(s)	41, 67, 94, 227, 324
AluI	AGCT	5 cut(s)	41, 67, 94, 227, 324
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	1 cut(s)	424
ApoI	RAATTY	2 cut(s)	81, 392
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	236, 425, 443
AsuHPI	GGTGA	1 cut(s)	402
AvaII	GGWCC	2 cut(s)	236, 443
BanII	GRGCYC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
Bbv12I	GWGCWC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	285
BfmI	CTRYAG	2 cut(s)	332, 436
BfuI	GTATCC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	2 cut(s)	236, 443
BmgT120I	GGNCC	3 cut(s)	236, 425, 443
BmiI	GGNNCC	4 cut(s)	237, 238, 444, 445
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	56, 225
BsaJI	CCNNGG	2 cut(s)	278, 314
BsaXI	ACNNNNNCTCC	6 cut(s)	129, 159, 198, 228, 257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	73, 427
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	278, 314
BseGI	GGATG	2 cut(s)	38, 289
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	73, 427
BseRI	GAGGAG	3 cut(s)	59, 202, 278
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	222, 429
BslI	CCNNNNNNNGG	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	222, 429
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	4, 164
BspANI	GGCC	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	4 cut(s)	237, 238, 444, 445
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	73, 427
BssECI	CCNNGG	2 cut(s)	278, 314
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	3 cut(s)	344, 365, 478
Bst6I	CTCTTC	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	451
BstF5I	GGATG	2 cut(s)	38, 289
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	2 cut(s)	332, 436
BstUI	CGCG	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	38, 289
BtsIMutI	CAGTG	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	236, 425, 443
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	7 cut(s)	41, 67, 94, 227, 313, 324, 426
CviKI_1	RGCY	7 cut(s)	41, 67, 94, 227, 313, 324, 426
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	236, 443
Eco53kI	GAGCTC	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	451
EcoO109I	RGGNCCY	2 cut(s)	236, 443
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	92
FaiI	YATR	8 cut(s)	90, 230, 301, 329, 402, 438, 468, 481
FaqI	GGGAC	2 cut(s)	222, 429
FatI	CATG	1 cut(s)	88
FauI	CCCGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	45, 296
FriOI	GRGCYC	1 cut(s)	326
GlaI	GCGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	56, 225
HaeIII	GGCC	1 cut(s)	426
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	1 cut(s)	92
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	2 cut(s)	158, 200
HphI	GGTGA	1 cut(s)	402
Hpy188I	TCNGA	5 cut(s)	54, 79, 114, 247, 464
Hpy188III	TCNNGA	2 cut(s)	47, 204
HpyAV	CCTTC	3 cut(s)	22, 289, 438
HpyCH4III	ACNGT	3 cut(s)	344, 365, 478
HpyCH4V	TGCA	4 cut(s)	36, 334, 383, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	92
HspAI	GCGC	1 cut(s)	416
KflI	GGGWCCC	2 cut(s)	236, 443
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	9 cut(s)	32, 86, 189, 300, 327, 373, 408, 426, 439
LweI	GCATC	1 cut(s)	23
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	221, 319, 366
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	4 cut(s)	16, 81, 194, 392
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	6 cut(s)	80, 109, 180, 205, 256, 457
Mph1103I	ATGCAT	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	4 cut(s)	237, 238, 444, 445
NsiI	ATGCAT	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	2 cut(s)	236, 443
Psp124BI	GAGCTC	1 cut(s)	326
Psp5II	RGGWCCY	2 cut(s)	236, 443
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	4 cut(s)	237, 238, 444, 445
PspPI	GGNCC	3 cut(s)	236, 425, 443
PspPPI	RGGWCCY	2 cut(s)	236, 443
PstI	CTGCAG	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	326
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	3 cut(s)	236, 425, 443
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	9 cut(s)	12, 43, 69, 96, 216, 229, 300, 326, 458
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	2 cut(s)	332, 436
SinI	GGWCC	2 cut(s)	236, 443
Sse9I	AATT	4 cut(s)	16, 81, 194, 392
SsiI	CCGC	2 cut(s)	4, 164
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	3 cut(s)	344, 365, 478
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	4 cut(s)	16, 81, 194, 392
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	120, 308
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	236, 443
XagI	CCTNNNNNAGG	1 cut(s)	451
XapI	RAATTY	2 cut(s)	81, 392
XmnI	GAANNNNTTC	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.