Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010131

Physical Location & Seq

Genomic Coordinates Forward (+)

17513008 .. 17514167

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTCTCCCTTTCGTTTCCATCTTCTTCTTCTGCCCTTTTACCTTCTCTCGTTGCTTTCGATTCTTCGCGTCGTCTCTCTTTGCAACCAAAGAAGTTAAATCGTCTTCAAAGTCACTTATTTTCACCTCAACATCTCTCATTCTCTCAGTCTAATGTCTCTCGTTACAGAGCGTTTTGTGTTTCTTCAAGCTCTCCTCCAGAGGGAACAGTCTCCGTAGTCGATTTCCATGAGAAAGATTGGTCCTTTCTCGAATCTATGGAAATTGACTCCACTGAACATACTCAGAAGATTGAGAGGATCATAAAGGCTGGAGAATTATCCGAATCTTCGAGGGTTTTGGTTTCAATTAGCTCCGAAACATTCGTTGATCGTTTGGTAGAATCTTCACCTTCTCAGCTTTTGCTCATTGTCCATGACTCCCTTTTTACGTTAGCCTGTATCAAAGAGAAGTACGACAAAGTCAAATGTTGGCAAGGAGAAATGATCTATGTCCCGGAGAAATGGTCTCCATTAGACGCTGTGTTTCTCTACTTTCTTCCAGCTTTGCCTTTTGACCTCGACGAACTGTTCAAGACACTCTCTCAACGTTGTTCCTCAGGTGCAAGAGTAGTAATCAGTCACCCGCAAGGTAGACTAGGCTTGGAGCAGCAAAGGAAAGAGTTTTCAGATGTGGTCGTCTCTGATTTACCTGATGAGTCCACATTGAGTAATGTTGCTGAGAAGCATTCATTTGAGCTAACCCAGTTTGTTGATGAGCAAGGCCTTTATCTCGCTGTTCTGAAATCCTCTAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

30.02

Weight (kDa)

5.55

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41950
fragaria_vesca	FvH4_6g21880 FvH4_6g21880 FvH4_6g21880
malus_domestica	MD12G1054600.v1.1 MD14G1054000.v1.1
prunus_persica	Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1
pyrus_communis	pycom14g04450
rosa_chinensis	RchiOBHm_Chr3g0479231
rosa_laevigata	RLG00000023592
rosa_multiflora	Rmu_sc0002978.1_g000011
rosa_roxburghii	Rroxscaffold_6G00402510
rosa_rugosa	Rorug03G0172900
rosa_samantha	Rh3AG224100 Rh3BG257000 Rh3CG252600 Rh3DG248800
rosa_wichuraiana	Rw3G020080 Rw3G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	634
AccII	CGCG	1 cut(s)	70
AciI	CCGC	1 cut(s)	626
AclI	AACGTT	1 cut(s)	589
AclWI	GGATC	1 cut(s)	308
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	110, 189, 348, 574
AluBI	AGCT	5 cut(s)	192, 354, 400, 545, 739
AluI	AGCT	5 cut(s)	192, 354, 400, 545, 739
Alw26I	GTCTC	5 cut(s)	80, 163, 217, 513, 685
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	763
ApeKI	GCWGC	1 cut(s)	649
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	497
AsuHPI	GGTGA	3 cut(s)	117, 381, 614
AvaII	GGWCC	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	5 cut(s)	80, 163, 217, 513, 685
BfaI	CTAG	1 cut(s)	638
BisI	GCNGC	1 cut(s)	650
BlsI	GCNGC	1 cut(s)	651
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	497
BmrI	ACTGGG	1 cut(s)	739
BmuI	ACTGGG	1 cut(s)	739
BpiI	GAAGAC	1 cut(s)	98
BpmI	CTGGAG	2 cut(s)	183, 333
BpuMI	CCSGG	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	745
Bse21I	CCTNAGG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	5 cut(s)	161, 299, 410, 612, 711
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	765
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	5 cut(s)	80, 163, 217, 513, 685
BsmBI	CGTCTC	2 cut(s)	80, 685
BsmFI	GGGAC	1 cut(s)	479
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	765
Bso31I	GGTCTC	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	300, 370, 486
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	1 cut(s)	765
BspCNI	CTCAG	5 cut(s)	160, 298, 409, 611, 712
BspFNI	CGCG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	745
BssMI	GATC	3 cut(s)	300, 370, 486
Bst4CI	ACNGT	2 cut(s)	211, 570
BstDEI	CTNAG	5 cut(s)	147, 285, 396, 598, 720
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	3 cut(s)	303, 373, 489
BstMAI	GTCTC	5 cut(s)	80, 163, 217, 513, 685
BstMBI	GATC	3 cut(s)	300, 370, 486
BstSCI	CCNGG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	765
BtsIMutI	CAGTG	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	2 cut(s)	59, 527
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	230, 416
CviJI	RGCY	9 cut(s)	192, 311, 354, 400, 437, 545, 642, 739, 765
CviKI_1	RGCY	9 cut(s)	192, 311, 354, 400, 437, 545, 642, 739, 765
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	5 cut(s)	147, 285, 396, 598, 720
DpnI	GATC	3 cut(s)	302, 372, 488
DpnII	GATC	3 cut(s)	300, 370, 486
Eco147I	AGGCCT	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	598
Esp3I	CGTCTC	2 cut(s)	80, 685
FaeI	CATG	2 cut(s)	233, 419
FaiI	YATR	6 cut(s)	231, 260, 282, 305, 417, 492
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	229, 415
FauI	CCCGC	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	650
Fsp4HI	GCNGC	1 cut(s)	650
FspBI	CTAG	1 cut(s)	638
GluI	GCNGC	1 cut(s)	650
GsuI	CTGGAG	2 cut(s)	183, 333
HaeIII	GGCC	1 cut(s)	765
HapII	CCGG	1 cut(s)	497
HgaI	GACGC	2 cut(s)	59, 527
Hin1II	CATG	2 cut(s)	233, 419
HinfI	GANTC	7 cut(s)	62, 254, 269, 326, 383, 419, 698
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	3 cut(s)	117, 381, 614
Hpy166II	GTNNAC	2 cut(s)	635, 702
Hpy188I	TCNGA	6 cut(s)	288, 325, 358, 670, 685, 783
Hpy188III	TCNNGA	3 cut(s)	200, 251, 574
Hpy8I	GTNNAC	2 cut(s)	635, 702
Hpy99I	CGWCG	2 cut(s)	75, 566
HpyAV	CCTTC	2 cut(s)	54, 402
HpyCH4III	ACNGT	2 cut(s)	211, 570
HpyCH4IV	ACGT	2 cut(s)	431, 589
HpyCH4V	TGCA	2 cut(s)	85, 605
HpyF3I	CTNAG	5 cut(s)	147, 285, 396, 598, 720
HpySE526I	ACGT	2 cut(s)	431, 589
Hsp92II	CATG	2 cut(s)	233, 419
Kzo9I	GATC	3 cut(s)	300, 370, 486
LmnI	GCTCC	2 cut(s)	359, 646
LpnPI	CCDG	8 cut(s)	213, 297, 451, 510, 555, 585, 705, 758
Lsp1109I	GCAGC	1 cut(s)	661
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	2 cut(s)	431, 589
MaeIII	GTNAC	3 cut(s)	113, 164, 620
MalI	GATC	3 cut(s)	302, 372, 488
MboI	GATC	3 cut(s)	300, 370, 486
MluCI	AATT	3 cut(s)	264, 317, 348
MlyI	GAGTC	3 cut(s)	263, 413, 707
MnlI	CCTC	8 cut(s)	138, 196, 207, 291, 327, 569, 607, 799
MseI	TTAA	1 cut(s)	98
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	727
MvnI	CGCG	1 cut(s)	70
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	3 cut(s)	300, 370, 486
NlaIII	CATG	2 cut(s)	233, 419
NmuCI	GTSAC	2 cut(s)	113, 620
PceI	AGGCCT	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	4 cut(s)	62, 254, 326, 383
PflFI	GACNNNGTC	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	495
PkrI	GCNGC	1 cut(s)	651
PleI	GAGTC	3 cut(s)	263, 413, 706
PpsI	GAGTC	3 cut(s)	263, 413, 706
Psp1406I	AACGTT	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	243
PsyI	GACNNNGTC	1 cut(s)	461
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	1 cut(s)	650
Sau3AI	GATC	3 cut(s)	300, 370, 486
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	3 cut(s)	263, 413, 707
ScrFI	CCNGG	1 cut(s)	497
SinI	GGWCC	1 cut(s)	243
Sse9I	AATT	3 cut(s)	264, 317, 348
SseBI	AGGCCT	1 cut(s)	765
SsiI	CCGC	1 cut(s)	626
SspMI	CTAG	1 cut(s)	638
StuI	AGGCCT	1 cut(s)	765
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	211, 570
TaiI	ACGT	2 cut(s)	434, 592
TaqI	TCGA	5 cut(s)	60, 222, 252, 332, 561
TasI	AATT	3 cut(s)	264, 317, 348
TfiI	GAWTC	4 cut(s)	62, 254, 326, 383
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	113, 620
TseI	GCWGC	1 cut(s)	649
Tsp45I	GTSAC	2 cut(s)	113, 620
TspDTI	ATGAA	1 cut(s)	720
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	280
Tth111I	GACNNNGTC	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	634
XspI	CTAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.