Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010131

Physical Location & Seq

Genomic Coordinates Reverse (-)

14617365 .. 14619073

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0172900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGATGATGATGATGGAGGCTGCAAACCTTGAGGAGGATCAGAACCAGATGATGATCATCAAAGGAAAGCGCACCAAGCGTCCGAGGCTGTCATCTCCGATTGTGTTAACAACGACAGCTTCAAGCTCATCTAGTCCAGGTGGTGGTGATGATGTTGAAGATCATCATCATCATCATCAATTGGGTATGATTAGTACTCCAATTAGAGTTAGTGATCAAGATGATGAGACAACCGCCTCGCCGGCCACCTCAGCTGAATTCACAGAGATGAGCATTACAGAAGAAGAAGAAGACATGGCAAACTGTTTGATACTTTTGGCTCAGTCGGGTCAGACACAAATCCGAAAAGTTCAAGAACAACAACAACTACAACAACAACAACCTATTAAGGCTGTTGCTGCTGCTGATACAGCTCCTGGGTTATATGTGTATGAGTGCAAGACATGTAACAGGTGCTTTTCTTCTTTCCAAGCACTTGGTGGGCATAGAGCAAGTCACAAGAAACCCAAGGCTAGTAATGTCATCAACACAACACAAGCGCAGCCGAAGAAAGCGTTGTCGTGTATGGAAGATCAAGATGAGTATGATCGTCGGTTTAACAACAACACAACAAGCACAACGCTTTCGTTACAAATATCGAACAGGGGTTTTGGCAATAGCAAAGGCAACAAGGTTCATGAGTGTTCAGTGTGCGGGGCTGAGTTCAGCTCTGGTCAAGCTCTTGGGGGTCATATGAGGAGGCACAGAACTTTCATGAACTCTACAACAACAGCACCAACATTGAGTAGTCCGCAACCTCAAGCACCTAACAAGAGGCCAAGAAGTGTTTTAGAGTTAGATCTTAATCTTCCTGCGCCAGAAGAAGAGCGGCTCGAAATGACCAAATTGCCATTTTCCAGCTCCAAGAAGGAACAAGTCATTGTCTTCTCTGCCTCTGCTCTGGTGGGATGCCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

35.12

Weight (kDa)

6.42

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	143 - 169	9.8e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	225 - 249	1.5e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41950
fragaria_vesca	FvH4_6g21880 FvH4_6g21880 FvH4_6g21880
malus_domestica	MD12G1054600.v1.1 MD14G1054000.v1.1
prunus_persica	Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1
pyrus_communis	pycom14g04450
rosa_chinensis	RchiOBHm_Chr3g0479231
rosa_laevigata	RLG00000023592
rosa_multiflora	Rmu_sc0002978.1_g000011
rosa_roxburghii	Rroxscaffold_6G00402510
rosa_rugosa	Rorug03G0172900
rosa_samantha	Rh3AG224100 Rh3BG257000 Rh3CG252600 Rh3DG248800
rosa_wichuraiana	Rw3G020080 Rw3G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccBSI	CCGCTC	1 cut(s)	868
AciI	CCGC	4 cut(s)	234, 693, 791, 868
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	257
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	34, 143
AflIII	ACRYGT	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	123, 158, 353
AjnI	CCWGG	2 cut(s)	136, 415
AluBI	AGCT	7 cut(s)	119, 126, 254, 413, 708, 719, 900
AluI	AGCT	7 cut(s)	119, 126, 254, 413, 708, 719, 900
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	243, 815
ApeKI	GCWGC	4 cut(s)	20, 398, 401, 541
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	72, 541, 856
AsuHPI	GGTGA	1 cut(s)	158
BbsI	GAAGAC	2 cut(s)	297, 916
BbvCI	CCTCAGC	1 cut(s)	250
BbvI	GCAGC	4 cut(s)	7, 385, 388, 553
BccI	CCATC	1 cut(s)	7
BciT130I	CCWGG	2 cut(s)	138, 417
BclI	TGATCA	2 cut(s)	54, 214
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	132, 513
BglI	GCCNNNNNGGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	5 cut(s)	21, 399, 402, 542, 869
BlsI	GCNGC	5 cut(s)	22, 400, 403, 543, 870
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	138, 417
BmrFI	CCNGG	2 cut(s)	138, 417
BmsI	GCATC	1 cut(s)	938
BpiI	GAAGAC	2 cut(s)	297, 916
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
Bpu10I	CCTNAGC	1 cut(s)	250
BpuEI	CTTGAG	2 cut(s)	50, 783
BsaBI	GATNNNNATC	4 cut(s)	53, 56, 165, 843
BsaJI	CCNNGG	3 cut(s)	83, 416, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 143
Bse118I	RCCGGY	1 cut(s)	241
Bse8I	GATNNNNATC	4 cut(s)	53, 56, 165, 843
BseBI	CCWGG	2 cut(s)	138, 417
BseDI	CCNNGG	3 cut(s)	83, 416, 507
BseGI	GGATG	1 cut(s)	953
BseJI	GATNNNNATC	4 cut(s)	53, 56, 165, 843
BseLI	CCNNNNNNNGG	2 cut(s)	34, 143
BseMII	CTCAG	3 cut(s)	264, 335, 690
BseRI	GAGGAG	2 cut(s)	47, 751
BseXI	GCAGC	4 cut(s)	7, 385, 388, 553
BshFI	GGCC	2 cut(s)	245, 817
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	34, 143
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	245, 817
Bsp143I	GATC	7 cut(s)	37, 54, 160, 214, 571, 586, 838
BspACI	CCGC	4 cut(s)	234, 693, 791, 868
BspANI	GGCC	2 cut(s)	245, 817
BspCNI	CTCAG	3 cut(s)	263, 334, 691
BspHI	TCATGA	2 cut(s)	676, 753
BspPI	GGATC	1 cut(s)	45
BspQI	GCTCTTC	1 cut(s)	858
BsrBI	CCGCTC	1 cut(s)	868
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	83, 416, 507
BssMI	GATC	7 cut(s)	37, 54, 160, 214, 571, 586, 838
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	138, 417
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	858
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	250, 321, 699
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	953
BstHHI	GCGC	3 cut(s)	72, 541, 856
BstKTI	GATC	7 cut(s)	40, 57, 163, 217, 574, 589, 841
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	7 cut(s)	37, 54, 160, 214, 571, 586, 838
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 85, 242, 251, 398, 410
BstNI	CCWGG	2 cut(s)	138, 417
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	136, 415
BstV1I	GCAGC	4 cut(s)	7, 385, 388, 553
BstV2I	GAAGAC	2 cut(s)	297, 916
BstX2I	RGATCY	1 cut(s)	838
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	838
BsuRI	GGCC	2 cut(s)	245, 817
BtsCI	GGATG	1 cut(s)	953
BtsIMutI	CAGTG	1 cut(s)	693
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	2 cut(s)	676, 753
CfoI	GCGC	3 cut(s)	72, 541, 856
Cfr10I	RCCGGY	1 cut(s)	241
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	4 cut(s)	295, 444, 677, 754
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	3 cut(s)	250, 321, 699
DpnI	GATC	7 cut(s)	39, 56, 162, 216, 573, 588, 840
DpnII	GATC	7 cut(s)	37, 54, 160, 214, 571, 586, 838
DraIII	CACNNNGTG	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	136, 415
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	4 cut(s)	298, 447, 680, 757
FatI	CATG	4 cut(s)	294, 443, 676, 753
FauI	CCCGC	1 cut(s)	686
FauNDI	CATATG	1 cut(s)	732
FbaI	TGATCA	2 cut(s)	54, 214
Fnu4HI	GCNGC	5 cut(s)	21, 399, 402, 542, 869
Fsp4HI	GCNGC	5 cut(s)	21, 399, 402, 542, 869
FspBI	CTAG	2 cut(s)	132, 513
GlaI	GCGC	3 cut(s)	71, 540, 855
GluI	GCNGC	5 cut(s)	21, 399, 402, 542, 869
HaeIII	GGCC	2 cut(s)	245, 817
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	3 cut(s)	72, 541, 856
Hin1II	CATG	4 cut(s)	298, 447, 680, 757
Hin6I	GCGC	3 cut(s)	70, 539, 854
HinP1I	GCGC	3 cut(s)	70, 539, 854
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HpaI	GTTAAC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	5 cut(s)	42, 84, 99, 333, 344
Hpy188III	TCNNGA	5 cut(s)	218, 353, 575, 677, 754
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	1 cut(s)	901
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	23, 438
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 85, 242, 251, 398, 410
HpyF3I	CTNAG	3 cut(s)	250, 321, 699
Hsp92II	CATG	4 cut(s)	298, 447, 680, 757
HspAI	GCGC	3 cut(s)	70, 539, 854
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	2 cut(s)	54, 214
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	7 cut(s)	37, 54, 160, 214, 571, 586, 838
LguI	GCTCTTC	1 cut(s)	858
LmnI	GCTCC	2 cut(s)	418, 905
Lsp1109I	GCAGC	4 cut(s)	7, 385, 388, 553
LweI	GCATC	1 cut(s)	938
MaeI	CTAG	2 cut(s)	132, 513
MaeIII	GTNAC	3 cut(s)	446, 494, 627
MalI	GATC	7 cut(s)	39, 56, 162, 216, 573, 588, 840
MbiI	CCGCTC	1 cut(s)	868
MboI	GATC	7 cut(s)	37, 54, 160, 214, 571, 586, 838
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	838
MluCI	AATT	4 cut(s)	179, 201, 257, 884
MroNI	GCCGGC	1 cut(s)	241
MseI	TTAA	4 cut(s)	107, 387, 597, 843
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	138, 417
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	138, 417
MwoI	GCNNNNNNNGC	6 cut(s)	76, 85, 242, 251, 398, 410
NaeI	GCCGGC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	732
NdeII	GATC	7 cut(s)	37, 54, 160, 214, 571, 586, 838
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	4 cut(s)	298, 447, 680, 757
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	447
PagI	TCATGA	2 cut(s)	676, 753
PciI	ACATGT	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	858
PdiI	GCCGGC	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	5 cut(s)	22, 400, 403, 543, 870
PscI	ACATGT	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	136, 415
PspGI	CCWGG	2 cut(s)	136, 415
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	838
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	858
SaqAI	TTAA	4 cut(s)	107, 387, 597, 843
SatI	GCNGC	5 cut(s)	21, 399, 402, 542, 869
Sau3AI	GATC	7 cut(s)	37, 54, 160, 214, 571, 586, 838
ScaI	AGTACT	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	138, 417
SfaNI	GCATC	1 cut(s)	938
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	29, 798
SmoI	CTYRAG	2 cut(s)	29, 798
Sse9I	AATT	4 cut(s)	179, 201, 257, 884
SsiI	CCGC	4 cut(s)	234, 693, 791, 868
SspMI	CTAG	2 cut(s)	132, 513
StyD4I	CCNGG	2 cut(s)	136, 415
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	638, 873
TasI	AATT	4 cut(s)	179, 201, 257, 884
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	1 cut(s)	871
Tru1I	TTAA	4 cut(s)	107, 387, 597, 843
Tru9I	TTAA	4 cut(s)	107, 387, 597, 843
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	4 cut(s)	20, 398, 401, 541
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	3 cut(s)	665, 742, 770
TspRI	CASTG	1 cut(s)	693
Van91I	CCANNNNNTGG	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	2 cut(s)	132, 513
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.