Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010131

Physical Location & Seq

Genomic Coordinates Forward (+)

6183790 .. 6185996

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1054600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTTTCAATTGGTTTTGAAGGATTTGTGGATCGGTTGGTTGAATCATCACCCTGCAGTGTCCTGCTCATTGTCCATGATTCACTTTTTGTTTTAGCTGGCGTTCAAGAAAAATATGACATGGTTAACTGTTGGCAAGGAGAATTGATATATGTACCTGATAAGTGGGCGCCTTTAGATGTGGTGTTCCTTTATTGCCTTCCAGCCGTGCCCTTGAAACTTGACGAAGTGTTTAAAACACTTGGAAGGTGCGAAGTTTTGGAGCAGCAACGACGACAATATCCAGATGTTATAACTTCTGACTTGCCTGAAAAGAGTACTTTATTGGAAGCTGCAGCAGAACATTCTTTCGAACTAACTAAATTTGTCGATGAGCCTGGTTTTTATCTTGCTGTATTAAAGTTTGTTGGGGCCAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.85

Weight (kDa)

4.6

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41950
fragaria_vesca	FvH4_6g21880 FvH4_6g21880 FvH4_6g21880
malus_domestica	MD12G1054600.v1.1 MD14G1054000.v1.1
prunus_persica	Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1
pyrus_communis	pycom14g04450
rosa_chinensis	RchiOBHm_Chr3g0479231
rosa_laevigata	RLG00000023592
rosa_multiflora	Rmu_sc0002978.1_g000011
rosa_roxburghii	Rroxscaffold_6G00402510
rosa_rugosa	Rorug03G0172900
rosa_samantha	Rh3AG224100 Rh3BG257000 Rh3CG252600 Rh3DG248800
rosa_wichuraiana	Rw3G020080 Rw3G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	170
AfaI	GTAC	2 cut(s)	156, 319
AgsI	TTSAA	5 cut(s)	9, 20, 44, 107, 217
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	2 cut(s)	98, 332
AluI	AGCT	2 cut(s)	98, 332
AlwI	GGATC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	420
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	3 cut(s)	265, 332, 335
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	42
AsuII	TTCGAA	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	277, 319, 347
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	378
BfmI	CTRYAG	2 cut(s)	55, 333
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	3 cut(s)	266, 333, 336
BlsI	GCNGC	3 cut(s)	267, 334, 337
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	171, 412
BmrFI	CCNGG	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	277, 319, 347
BshFI	GGCC	1 cut(s)	413
BshNI	GGYRCC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	413
BspLI	GGNNCC	2 cut(s)	171, 412
BspMAI	CTGCAG	2 cut(s)	59, 337
BspPI	GGATC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	169
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	131
BstACI	GRCGYC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	2 cut(s)	55, 333
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	277, 319, 347
BsuRI	GGCC	1 cut(s)	413
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	420
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	155, 318
CviAII	CATG	2 cut(s)	77, 121
CviJI	RGCY	5 cut(s)	98, 206, 332, 376, 413
CviKI_1	RGCY	5 cut(s)	98, 206, 332, 376, 413
CviQI	GTAC	2 cut(s)	155, 318
DinI	GGCGCC	1 cut(s)	171
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
DraI	TTTAAA	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	376
EgeI	GGCGCC	1 cut(s)	171
EheI	GGCGCC	1 cut(s)	171
FaeI	CATG	2 cut(s)	80, 124
FaiI	YATR	6 cut(s)	78, 117, 122, 151, 153, 293
FatI	CATG	2 cut(s)	76, 120
Fnu4HI	GCNGC	3 cut(s)	266, 333, 336
Fsp4HI	GCNGC	3 cut(s)	266, 333, 336
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	266, 333, 336
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	80, 124
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	44, 80
HpaI	GTTAAC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	107, 284
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	3 cut(s)	14, 209, 240
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	57, 335
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	2 cut(s)	80, 124
HspAI	GCGC	1 cut(s)	170
KasI	GGCGCC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	9 cut(s)	67, 77, 84, 171, 216, 297, 321, 363, 390
Lsp1109I	GCAGC	3 cut(s)	277, 319, 347
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	3 cut(s)	9, 143, 362
Mly113I	GGCGCC	1 cut(s)	170
MseI	TTAA	3 cut(s)	126, 234, 398
MspR9I	CCNGG	1 cut(s)	378
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	378
NarI	GGCGCC	1 cut(s)	170
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	80, 124
NlaIV	GGNNCC	2 cut(s)	171, 412
NspV	TTCGAA	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	44, 80
PkrI	GCNGC	3 cut(s)	267, 334, 337
PluTI	GGCGCC	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	171, 412
PspPI	GGNCC	1 cut(s)	411
PstI	CTGCAG	2 cut(s)	59, 337
PstNI	CAGNNNCTG	1 cut(s)	420
RsaI	GTAC	2 cut(s)	156, 319
RsaNI	GTAC	2 cut(s)	155, 318
SaqAI	TTAA	3 cut(s)	126, 234, 398
SatI	GCNGC	3 cut(s)	266, 333, 336
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	411
ScaI	AGTACT	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	4 cut(s)	100, 160, 251, 334
SfcI	CTRYAG	2 cut(s)	55, 333
SfoI	GGCGCC	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	351
Sse9I	AATT	3 cut(s)	9, 143, 362
SspDI	GGCGCC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	351, 369
TasI	AATT	3 cut(s)	9, 143, 362
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	44, 80
Tru1I	TTAA	3 cut(s)	126, 234, 398
Tru9I	TTAA	3 cut(s)	126, 234, 398
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	3 cut(s)	265, 332, 335
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	362
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.