RchiOBHm_Chr3g0479231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010131
Physical Location & Seq
Forward (+)
25023307 .. 25025334
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44433

Sequence Viewer

Length: 825 bp
ATGAATTCTGTTTTCTTTCCTTTACCTAGCTGCCAGTTTCTCTTACCTTGTCGTCAAAAACAACCCCAATGCATTCTAACCAACCGTGTCTGTCATCGGAACACCTACGTCTCTCCTCTTTCTCTTTCATTTCCCTTTCTTTCACATCATTCTTTGCGTGCTCGCTTATCACCTGTTGGTGCTACAGTTCCATCAGATGAAGGAGTAGTTACTGAAGGAGTGGTGTCTGTAATCAACTTTGAAGATTTTGCTGAGAAAGATTGGTCATTTCTTGATTCAGATAATTTCAGTTCTGAAGAAGATAGGCTAAAGGTTGATCGCATTATATCCGCAGGAGAGATTCAAGAAACATCTAGGGTTATGGTTTCAGTTGGTTCTGAAGCATTTGTGGATCAATTGGTGGAATCATCACCATGCAGTCTGTTGCTTGTTGTCCATGATTCACTTTTTGTGTTGGCCGGCATTAAAGAAAAATATGACAAGGTTAAGTGTTGGCAAGGAGAATTGATATATGTACCTGATAAGTGGGCTCCTTTAGATGTTGTGTTTCTCTATTTCCTTCCAGCCGTGCCCTTTAACCTTGGACAGGTGTTTGGGGCAGTTGCAAACTGTTTTTCTCCAGGTGCAAGACTGGTTATCAGCCATCCCCAAGGAAGAGATGTTTTAGAGAAACAACGGCAACAATATCCAGATGTTATAACTTCTGACTTGCCTGAGAAGAGAACTCTAAAGGAAGTTGCAGCAGAACATTTTTTTGAATTAACTGACTATGTCGATGAGCAGGGCCTTTATCTTGCTGTATTGAAGTTTGTGGGGGCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.7

Weight (kDa)

5.01

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
AciI CCGC 1 cut(s) 330
AclWI GGATC 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 3 cut(s) 234, 315, 399
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 586
AgsI TTSAA 4 cut(s) 242, 344, 758, 805
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 399
AoxI GGCC 2 cut(s) 456, 784
ApeKI GCWGC 2 cut(s) 30, 740
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 784
AsuHPI GGTGA 2 cut(s) 162, 402
BaeGI GKGCMC 1 cut(s) 573
BanII GRGCYC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 17, 752
BccI CCATC 2 cut(s) 199, 651
BceAI ACGGC 2 cut(s) 551, 692
BciT130I CCWGG 1 cut(s) 621
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 27, 354
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 31, 741
BlsI GCNGC 2 cut(s) 32, 742
Bme1390I CCNGG 1 cut(s) 621
BmgT120I GGNCC 1 cut(s) 784
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 1 cut(s) 621
BpmI CTGGAG 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 580, 649
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 2 cut(s) 34, 636
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 580, 649
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMII CTCAG 2 cut(s) 243, 705
BseNI ACTGG 2 cut(s) 34, 636
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 2 cut(s) 17, 752
BshFI GGCC 2 cut(s) 458, 786
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 459
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 2 cut(s) 458, 786
Bsp1286I GDGCHC 3 cut(s) 163, 532, 573
Bsp143I GATC 2 cut(s) 316, 391
BspACI CCGC 1 cut(s) 330
BspANI GGCC 2 cut(s) 458, 786
BspCNI CTCAG 2 cut(s) 244, 706
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 2 cut(s) 34, 636
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 580, 649
BssMI GATC 2 cut(s) 316, 391
BssT1I CCWWGG 2 cut(s) 580, 649
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 3 cut(s) 86, 187, 611
Bst6I CTCTTC 2 cut(s) 649, 713
BstC8I GCNNGC 3 cut(s) 159, 163, 460
BstDEI CTNAG 2 cut(s) 252, 714
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 1 cut(s) 643
BstKTI GATC 2 cut(s) 319, 394
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 316, 391
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 619
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 17, 752
BsuRI GGCC 2 cut(s) 458, 786
BtsCI GGATG 1 cut(s) 643
Cac8I GCNNGC 3 cut(s) 159, 163, 460
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 1 cut(s) 784
Csp6I GTAC 1 cut(s) 515
CviAII CATG 2 cut(s) 414, 437
CviJI RGCY 7 cut(s) 30, 307, 458, 530, 566, 642, 786
CviKI_1 RGCY 7 cut(s) 30, 307, 458, 530, 566, 642, 786
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 2 cut(s) 252, 714
DpnI GATC 2 cut(s) 318, 393
DpnII GATC 2 cut(s) 316, 391
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 2 cut(s) 649, 713
EarI CTCTTC 2 cut(s) 649, 713
Eco130I CCWWGG 2 cut(s) 580, 649
Eco24I GRGCYC 1 cut(s) 532
Eco57I CTGAAG 3 cut(s) 234, 315, 399
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 580, 649
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 532
ErhI CCWWGG 2 cut(s) 580, 649
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 2 cut(s) 417, 440
FaiI YATR 9 cut(s) 326, 362, 415, 438, 477, 511, 513, 698, 771
FatI CATG 2 cut(s) 413, 436
Fnu4HI GCNGC 2 cut(s) 31, 741
FokI GGATG 1 cut(s) 630
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 2 cut(s) 31, 741
FspBI CTAG 2 cut(s) 27, 354
GluI GCNGC 2 cut(s) 31, 741
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 2 cut(s) 458, 786
HapII CCGG 1 cut(s) 459
Hin1II CATG 2 cut(s) 417, 440
HinfI GANTC 4 cut(s) 275, 340, 404, 440
HpaII CCGG 1 cut(s) 459
HphI GGTGA 2 cut(s) 162, 402
Hpy188I TCNGA 6 cut(s) 99, 196, 280, 295, 379, 706
Hpy188III TCNNGA 3 cut(s) 272, 344, 689
HpyAV CCTTC 3 cut(s) 194, 209, 569
HpyCH4III ACNGT 3 cut(s) 86, 187, 611
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 72, 417, 605, 626, 740
HpyF3I CTNAG 2 cut(s) 252, 714
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 417, 440
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 316, 391
LmnI GCTCC 1 cut(s) 535
Lsp1109I GCAGC 2 cut(s) 17, 752
MaeI CTAG 2 cut(s) 27, 354
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 318, 393
MboI GATC 2 cut(s) 316, 391
MboII GAAGA 5 cut(s) 254, 308, 311, 666, 730
MfeI CAATTG 1 cut(s) 395
MhlI GDGCHC 3 cut(s) 163, 532, 573
MluCI AATT 5 cut(s) 4, 283, 395, 503, 758
MnlI CCTC 1 cut(s) 126
Mph1103I ATGCAT 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 458
MseI TTAA 4 cut(s) 465, 486, 576, 761
MslI CAYNNNNRTG 1 cut(s) 412
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 621
MunI CAATTG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 72
MvaI CCWGG 1 cut(s) 621
NaeI GCCGGC 1 cut(s) 460
NdeII GATC 2 cut(s) 316, 391
NgoMIV GCCGGC 1 cut(s) 458
NlaIII CATG 2 cut(s) 417, 440
NlaIV GGNNCC 1 cut(s) 531
NsiI ATGCAT 1 cut(s) 74
PctI GAATGC 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 460
PfeI GAWTC 4 cut(s) 275, 340, 404, 440
PflFI GACNNNGTC 1 cut(s) 770
PkrI GCNGC 2 cut(s) 32, 742
PsiI TTATAA 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 1 cut(s) 784
PsyI GACNNNGTC 1 cut(s) 770
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 412
SaqAI TTAA 4 cut(s) 465, 486, 576, 761
SatI GCNGC 2 cut(s) 31, 741
Sau3AI GATC 2 cut(s) 316, 391
Sau96I GGNCC 1 cut(s) 784
ScrFI CCNGG 1 cut(s) 621
SduI GDGCHC 3 cut(s) 163, 532, 573
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 412
Sse9I AATT 5 cut(s) 4, 283, 395, 503, 758
SsiI CCGC 1 cut(s) 330
SspMI CTAG 2 cut(s) 27, 354
StyD4I CCNGG 1 cut(s) 619
StyI CCWWGG 2 cut(s) 580, 649
TaaI ACNGT 3 cut(s) 86, 187, 611
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 774
TasI AATT 5 cut(s) 4, 283, 395, 503, 758
TfiI GAWTC 4 cut(s) 275, 340, 404, 440
Tru1I TTAA 4 cut(s) 465, 486, 576, 761
Tru9I TTAA 4 cut(s) 465, 486, 576, 761
TseI GCWGC 2 cut(s) 30, 740
TspDTI ATGAA 3 cut(s) 17, 117, 213
Tth111I GACNNNGTC 1 cut(s) 770
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 1 cut(s) 4
XspI CTAG 2 cut(s) 27, 354
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.