RLG00000023592

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0010131
Physical Location & Seq
Reverse (-)
25723425 .. 25725313
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023592

Sequence Viewer

Length: 960 bp
ATGATAGGAGTTCGCCCGGTTTCTGGTAGTAAAAGCAGAGAGGAGCAACCCCGAAGTTTAGAATTGGGAATTACAGCGACAGCCGACAGGAATCGAACTCATAAAGTTAGGGCTTTCACGCCGTCGAGCTTCAAGGGCTCTAATATGAAAGATATGTGCAGGAGCTGCCAGTTTCTCTTACCTCATCTTCAAAAACAACCCCAATGCATTTTAACCAACCGTGTCTGTCATCGGAGCACCTGCGTCTCTCCTCTTTCTCTTTCATTTCCGTTTCTTTCACATCATTCCTTGCGTGCTTGCTTATCACCTGTTGGTGCTACAGTTCCCTCAAATGAAGGAGTAGTTACTGAAGGAGTGGTGTCTGTAATCAACTTTGAAGATTTTGCTGAGAAAGATTGGTCATTTCTTGATTCAGATAATTTCAGTTCTGAAGAAGATAGGCTAAAGGTTGATCGCATTATATCTGCGGGAGAGATTCAAGAAACATCTAGGGTTATGGTTTCAGTTGGTTCTGAAGCATTTGTGGATCAATTGGTGGAATCATCACCATGCAGTCTGTTGCTTGTTGTCCATGAATCACTTTTTGTGTTGGCCGGCATTAAAGAAAAATATGACGAGGTTAAGTGTTGGCAAGGAGAATTCATATATGTACCTGATAAGTGGGCTCCTTTAGATATTGTGTTTCTCTATTTCCTTCCAGCCGTGCCCTTTAACCTTGGACAGGTGTTTGGAGCAGTTGCAAAATGTTTTTCTCCAGGTGCAAGACTGGTTATCAGCCATCCCCAAGGAAGAGATGTTTTGGAGAAACAACGACAACAATATCCAGATGTTATAACTTCTGACTTGCCTGAGAAGAGTACTCTAAAGGAAGTTGCAGCAGAACATTTTTTTGAATTAACTGACTATGTCGATGAGCAGGGCCTTTATCTTGCTGTATTGAAGTTTGTGGGGGCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

35.53

Weight (kDa)

5.55

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 833
AarI CACCTGC 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 248
AciI CCGC 1 cut(s) 467
AclWI GGATC 1 cut(s) 534
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 3 cut(s) 369, 450, 534
AfaI GTAC 2 cut(s) 651, 859
AfiI CCNNNNNNNGG 2 cut(s) 23, 721
AgsI TTSAA 6 cut(s) 133, 191, 377, 479, 893, 940
AjnI CCWGG 1 cut(s) 754
AluBI AGCT 2 cut(s) 129, 165
AluI AGCT 2 cut(s) 129, 165
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 1 cut(s) 534
AlwNI CAGNNNCTG 1 cut(s) 165
AoxI GGCC 2 cut(s) 591, 919
ApeKI GCWGC 2 cut(s) 165, 875
ApoI RAATTY 1 cut(s) 638
AspS9I GGNCC 1 cut(s) 919
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 297, 537
BaeGI GKGCMC 1 cut(s) 708
BanII GRGCYC 2 cut(s) 140, 667
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 152, 887
BccI CCATC 1 cut(s) 786
BceAI ACGGC 2 cut(s) 106, 686
BciT130I CCWGG 1 cut(s) 756
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 248
BisI GCNGC 2 cut(s) 166, 876
BlsI GCNGC 2 cut(s) 167, 877
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 2 cut(s) 17, 756
BmgT120I GGNCC 1 cut(s) 919
BmiI GGNNCC 1 cut(s) 666
BmrFI CCNGG 2 cut(s) 17, 756
BpmI CTGGAG 1 cut(s) 738
BpuMI CCSGG 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 715, 784
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 721
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 2 cut(s) 169, 771
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 2 cut(s) 715, 784
BseGI GGATG 1 cut(s) 778
BseLI CCNNNNNNNGG 2 cut(s) 23, 721
BseMII CTCAG 2 cut(s) 378, 840
BseNI ACTGG 2 cut(s) 169, 771
BseRI GAGGAG 2 cut(s) 56, 240
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 2 cut(s) 152, 887
BsgI GTGCAG 1 cut(s) 178
BshFI GGCC 2 cut(s) 593, 921
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 2 cut(s) 17, 594
BslI CCNNNNNNNGG 2 cut(s) 23, 721
BsmAI GTCTC 1 cut(s) 250
BsmBI CGTCTC 1 cut(s) 250
BsnI GGCC 2 cut(s) 593, 921
Bsp1286I GDGCHC 4 cut(s) 140, 239, 667, 708
Bsp143I GATC 2 cut(s) 451, 526
BspACI CCGC 1 cut(s) 467
BspANI GGCC 2 cut(s) 593, 921
BspCNI CTCAG 2 cut(s) 379, 841
BspLI GGNNCC 1 cut(s) 666
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 534
BsrFI RCCGGY 1 cut(s) 593
BsrI ACTGG 2 cut(s) 169, 771
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 2 cut(s) 715, 784
BssMI GATC 2 cut(s) 451, 526
BssT1I CCWWGG 2 cut(s) 715, 784
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 2 cut(s) 221, 322
Bst6I CTCTTC 2 cut(s) 784, 848
BstAPI GCANNNNNTGC 1 cut(s) 165
BstC8I GCNNGC 3 cut(s) 294, 298, 595
BstDEI CTNAG 2 cut(s) 387, 849
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 1 cut(s) 778
BstKTI GATC 2 cut(s) 454, 529
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 451, 526
BstMWI GCNNNNNNNGC 2 cut(s) 135, 165
BstNI CCWGG 1 cut(s) 756
BstSCI CCNGG 2 cut(s) 15, 754
BstSFI CTRYAG 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 708
BstV1I GCAGC 2 cut(s) 152, 887
BsuRI GGCC 2 cut(s) 593, 921
BtsCI GGATG 1 cut(s) 778
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 294, 298, 595
CaiI CAGNNNCTG 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 593
Cfr13I GGNCC 1 cut(s) 919
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 650, 858
CviAII CATG 2 cut(s) 549, 572
CviQI GTAC 2 cut(s) 650, 858
DdeI CTNAG 2 cut(s) 387, 849
DpnI GATC 2 cut(s) 453, 528
DpnII GATC 2 cut(s) 451, 526
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 2 cut(s) 784, 848
EarI CTCTTC 2 cut(s) 784, 848
Eco130I CCWWGG 2 cut(s) 715, 784
Eco24I GRGCYC 2 cut(s) 140, 667
Eco57I CTGAAG 3 cut(s) 369, 450, 534
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 919
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 2 cut(s) 715, 784
EcoT22I ATGCAT 1 cut(s) 209
EcoT38I GRGCYC 2 cut(s) 140, 667
ErhI CCWWGG 2 cut(s) 715, 784
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 2 cut(s) 552, 575
FatI CATG 2 cut(s) 548, 571
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 166, 876
FokI GGATG 1 cut(s) 765
FriOI GRGCYC 2 cut(s) 140, 667
Fsp4HI GCNGC 2 cut(s) 166, 876
FspBI CTAG 1 cut(s) 489
GluI GCNGC 2 cut(s) 166, 876
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 2 cut(s) 593, 921
HapII CCGG 2 cut(s) 17, 594
HgaI GACGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 552, 575
HinfI GANTC 5 cut(s) 91, 410, 475, 539, 575
HpaII CCGG 2 cut(s) 17, 594
HphI GGTGA 2 cut(s) 297, 537
Hpy188I TCNGA 5 cut(s) 234, 415, 430, 514, 841
Hpy188III TCNNGA 3 cut(s) 407, 479, 824
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 329, 344, 704
HpyCH4III ACNGT 2 cut(s) 221, 322
HpyCH4V TGCA 6 cut(s) 159, 207, 552, 740, 761, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 165
HpyF3I CTNAG 2 cut(s) 387, 849
Hsp92II CATG 2 cut(s) 552, 575
KroI GCCGGC 1 cut(s) 593
KroNI GCCGGC 1 cut(s) 595
Kzo9I GATC 2 cut(s) 451, 526
LmnI GCTCC 5 cut(s) 43, 162, 234, 670, 731
Lsp1109I GCAGC 2 cut(s) 152, 887
MaeI CTAG 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 343
MalI GATC 2 cut(s) 453, 528
MboI GATC 2 cut(s) 451, 526
MboII GAAGA 6 cut(s) 179, 389, 443, 446, 801, 865
MfeI CAATTG 1 cut(s) 530
MhlI GDGCHC 4 cut(s) 140, 239, 667, 708
MluCI AATT 6 cut(s) 62, 69, 418, 530, 638, 893
MnlI CCTC 5 cut(s) 34, 192, 261, 337, 610
Mph1103I ATGCAT 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 593
MseI TTAA 5 cut(s) 212, 600, 621, 711, 896
MslI CAYNNNNRTG 1 cut(s) 547
MspI CCGG 2 cut(s) 17, 594
MspR9I CCNGG 2 cut(s) 17, 756
MunI CAATTG 1 cut(s) 530
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 2 cut(s) 135, 165
NaeI GCCGGC 1 cut(s) 595
NciI CCSGG 1 cut(s) 17
NdeII GATC 2 cut(s) 451, 526
NgoMIV GCCGGC 1 cut(s) 593
NlaIII CATG 2 cut(s) 552, 575
NlaIV GGNNCC 1 cut(s) 666
NsiI ATGCAT 1 cut(s) 209
PaqCI CACCTGC 1 cut(s) 248
PdiI GCCGGC 1 cut(s) 595
PfeI GAWTC 5 cut(s) 91, 410, 475, 539, 575
PflFI GACNNNGTC 1 cut(s) 905
PkrI GCNGC 2 cut(s) 167, 877
PsiI TTATAA 1 cut(s) 833
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 1 cut(s) 666
PspPI GGNCC 1 cut(s) 919
PstNI CAGNNNCTG 1 cut(s) 165
PsyI GACNNNGTC 1 cut(s) 905
RsaI GTAC 2 cut(s) 651, 859
RsaNI GTAC 2 cut(s) 650, 858
RseI CAYNNNNRTG 1 cut(s) 547
SaqAI TTAA 5 cut(s) 212, 600, 621, 711, 896
SatI GCNGC 2 cut(s) 166, 876
Sau3AI GATC 2 cut(s) 451, 526
Sau96I GGNCC 1 cut(s) 919
ScaI AGTACT 1 cut(s) 859
ScrFI CCNGG 2 cut(s) 17, 756
SduI GDGCHC 4 cut(s) 140, 239, 667, 708
SfcI CTRYAG 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 547
Sse9I AATT 6 cut(s) 62, 69, 418, 530, 638, 893
SsiI CCGC 1 cut(s) 467
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 15, 754
StyI CCWWGG 2 cut(s) 715, 784
TaaI ACNGT 2 cut(s) 221, 322
TaqI TCGA 3 cut(s) 94, 125, 909
TasI AATT 6 cut(s) 62, 69, 418, 530, 638, 893
TatI WGTACW 1 cut(s) 857
TfiI GAWTC 5 cut(s) 91, 410, 475, 539, 575
Tru1I TTAA 5 cut(s) 212, 600, 621, 711, 896
Tru9I TTAA 5 cut(s) 212, 600, 621, 711, 896
TseI GCWGC 2 cut(s) 165, 875
TspDTI ATGAA 5 cut(s) 161, 252, 348, 588, 631
TspGWI ACGGA 1 cut(s) 258
Tth111I GACNNNGTC 1 cut(s) 905
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 1 cut(s) 638
XspI CTAG 1 cut(s) 489
ZrmI AGTACT 1 cut(s) 859
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.