Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010131

Physical Location & Seq

Genomic Coordinates Reverse (-)

24002303 .. 24003419

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G020510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAATTCTGTTTTCTTTCCGTTACCTAGCTGCCAGTTTCTCTTACCTTGTCGTCAAAAACAACCCCAATGCATTCTAACCAACCGTGTCTGTCATCGGAACACCTACGTCTCTCCTCTTTCTCTTTCATTCCCCTTTCTTTCACATCATTCTCTGCGTGCTCGCTTATCACCTGTTGGTGCTACAGTTCCATCAAATGAAGGAGTAGTTACTGAAGGAGTGGTGTCTGTAATCAACTTTGAAGATTTTGCTGAGAAAGATTGGTCATTTCTTGATTCAGATAATTTCAGTTCTGAAGAAGACAGGCTAATTAAAGAAACATCTAGGGTTATGGTTTCAGTTGGTTCTGAAGCATTTGTGGATCAATTGGTGGAATCATCACCATGCAGTCTGTTGCTTGTTGTCCATGATTCACTTTTTGTGTTGACCGGTATTAAAGAAAAATATGACAAGGTTAAGTGTTGGCAAGGAGAATTGATATATGTACCTGATAAGTGGGCTCCTTTAGATGTTGTGTTTCTCTATTTCCTTCCAGCCGTGCCCTTTAACCTTGGACAGGTGTTTGGAGCAGTTGCAAAATGTTTTTCGCCAGGTGCAAGACTGGTTATCAGCCATCCCCAAGGAAGAGATGTTTTAGAGAAACAACGGCAACAATATCCAGATGAAGTTGCAGCAGAACATTTTTTCGAATTAACTGACTATGTCGATGAGCAGGGCCTTTATCTTGCTGTATTGAAGTTTGTGGGGGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

28.19

Weight (kDa)

5.14

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41950
fragaria_vesca	FvH4_6g21880 FvH4_6g21880 FvH4_6g21880
malus_domestica	MD12G1054600.v1.1 MD14G1054000.v1.1
prunus_persica	Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1
pyrus_communis	pycom14g04450
rosa_chinensis	RchiOBHm_Chr3g0479231
rosa_laevigata	RLG00000023592
rosa_multiflora	Rmu_sc0002978.1_g000011
rosa_roxburghii	Rroxscaffold_6G00402510
rosa_rugosa	Rorug03G0172900
rosa_samantha	Rh3AG224100 Rh3BG257000 Rh3CG252600 Rh3DG248800
rosa_wichuraiana	Rw3G020080 Rw3G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	3 cut(s)	234, 315, 369
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgeI	ACCGGT	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	242, 736
AjnI	CCWGG	1 cut(s)	589
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	1 cut(s)	715
ApeKI	GCWGC	2 cut(s)	30, 671
ApoI	RAATTY	1 cut(s)	4
AsiGI	ACCGGT	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	2 cut(s)	162, 372
AsuII	TTCGAA	1 cut(s)	687
BaeGI	GKGCMC	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	17, 683
BccI	CCATC	2 cut(s)	199, 621
BceAI	ACGGC	2 cut(s)	521, 662
BciT130I	CCWGG	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	27, 324
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	31, 672
BlsI	GCNGC	2 cut(s)	32, 673
Bme1390I	CCNGG	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	1 cut(s)	591
BpiI	GAAGAC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	550, 619
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	34, 606
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	2 cut(s)	550, 619
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	2 cut(s)	34, 606
BseRI	GAGGAG	1 cut(s)	105
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	17, 683
BshFI	GGCC	1 cut(s)	717
BshTI	ACCGGT	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	717
Bsp119I	TTCGAA	1 cut(s)	687
Bsp1286I	GDGCHC	3 cut(s)	163, 502, 543
Bsp143I	GATC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	717
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	501
BspPI	GGATC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	34, 606
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	550, 619
BssMI	GATC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	550, 619
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	2 cut(s)	86, 187
Bst6I	CTCTTC	1 cut(s)	619
BstBI	TTCGAA	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	159, 163
BstDEI	CTNAG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	1 cut(s)	364
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	589
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	17, 683
BstV2I	GAAGAC	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	717
BtsCI	GGATG	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	159, 163
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	715
Csp6I	GTAC	1 cut(s)	485
CspAI	ACCGGT	1 cut(s)	428
CviAII	CATG	2 cut(s)	384, 407
CviJI	RGCY	6 cut(s)	30, 307, 500, 536, 612, 717
CviKI_1	RGCY	6 cut(s)	30, 307, 500, 536, 612, 717
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	619
Eco130I	CCWWGG	2 cut(s)	550, 619
Eco24I	GRGCYC	1 cut(s)	502
Eco57I	CTGAAG	3 cut(s)	234, 315, 369
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	715
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	589
EcoT14I	CCWWGG	2 cut(s)	550, 619
EcoT22I	ATGCAT	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	2 cut(s)	550, 619
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	2 cut(s)	387, 410
FaiI	YATR	7 cut(s)	332, 385, 408, 447, 481, 483, 702
FatI	CATG	2 cut(s)	383, 406
Fnu4HI	GCNGC	2 cut(s)	31, 672
FokI	GGATG	1 cut(s)	600
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	2 cut(s)	31, 672
FspBI	CTAG	2 cut(s)	27, 324
GluI	GCNGC	2 cut(s)	31, 672
HaeIII	GGCC	1 cut(s)	717
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	2 cut(s)	387, 410
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	3 cut(s)	275, 374, 410
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	2 cut(s)	162, 372
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	4 cut(s)	99, 280, 295, 349
Hpy188III	TCNNGA	2 cut(s)	272, 659
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	3 cut(s)	194, 209, 539
HpyCH4III	ACNGT	2 cut(s)	86, 187
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	5 cut(s)	72, 387, 575, 596, 671
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	387, 410
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	505, 566
Lsp1109I	GCAGC	2 cut(s)	17, 683
MaeI	CTAG	2 cut(s)	27, 324
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	21, 208
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	4 cut(s)	254, 308, 311, 636
MfeI	CAATTG	1 cut(s)	365
MhlI	GDGCHC	3 cut(s)	163, 502, 543
MluCI	AATT	6 cut(s)	4, 283, 309, 365, 473, 689
MnlI	CCTC	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	74
MseI	TTAA	5 cut(s)	312, 435, 456, 546, 692
MslI	CAYNNNNRTG	1 cut(s)	382
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	591
MunI	CAATTG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	591
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	387, 410
NlaIV	GGNNCC	1 cut(s)	501
NsiI	ATGCAT	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	687
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	3 cut(s)	275, 374, 410
PflFI	GACNNNGTC	1 cut(s)	701
PinAI	ACCGGT	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	32, 673
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	1 cut(s)	501
PspPI	GGNCC	1 cut(s)	715
PsyI	GACNNNGTC	1 cut(s)	701
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	382
SaqAI	TTAA	5 cut(s)	312, 435, 456, 546, 692
SatI	GCNGC	2 cut(s)	31, 672
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	715
ScrFI	CCNGG	1 cut(s)	591
SduI	GDGCHC	3 cut(s)	163, 502, 543
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	687
SmiMI	CAYNNNNRTG	1 cut(s)	382
Sse9I	AATT	6 cut(s)	4, 283, 309, 365, 473, 689
SspMI	CTAG	2 cut(s)	27, 324
StyD4I	CCNGG	1 cut(s)	589
StyI	CCWWGG	2 cut(s)	550, 619
TaaI	ACNGT	2 cut(s)	86, 187
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	687, 705
TasI	AATT	6 cut(s)	4, 283, 309, 365, 473, 689
TfiI	GAWTC	3 cut(s)	275, 374, 410
Tru1I	TTAA	5 cut(s)	312, 435, 456, 546, 692
Tru9I	TTAA	5 cut(s)	312, 435, 456, 546, 692
TseI	GCWGC	2 cut(s)	30, 671
TspDTI	ATGAA	4 cut(s)	17, 117, 213, 678
TspGWI	ACGGA	1 cut(s)	9
Tth111I	GACNNNGTC	1 cut(s)	701
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	2 cut(s)	27, 324
Zsp2I	ATGCAT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.