Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010131

Physical Location & Seq

Genomic Coordinates Forward (+)

5423505 .. 5425779

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1054000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAATTCTGTTTTCTCATCTCACTCTCTTTTCGTTTCCTTGCCTAGATGTCAGTTCCTGCCTTGTATTCAAACACAACCTCAACATGTGGTCATAAACCGTGTTTATCGCCGGAATCATTGTGTCCCACATCTTTCTCTTTCATTTCCTTTTATTGCACATCAGTCTTTGCATACTCGCCAAACACCTTTTGGTGCCACGGCTCCATCAAATGAAGGCGTAGTGTCTGTAATCAACTTTGACGATTTTGCTGAGAAAGACTGGTCCTTTCTTGATTCAGGTGATTTCAGTTCCAACCAAGATTATAACCTTAAGATTGATCGCATTATATCCGCAGGAGAGATTGAAGAAGCTTCAAGGGTTATGGTTTCAATTGGTTCTGAAGGATTTGTGGATCGGTTGGTTGAATCATCACCCTGCAGTCTCCTGCTTGTTGTCCATGATTCACTTTTTGTTTTAGCTGGCATTAAAGAAAAATATGACAAGGTTAAGTGTTGGCAAGGAGAATTGATATATGTACCTGATAAGTGGGCGCCCTTAGATGTTGTGTTCCTTTATTGCCTTCCAGCCGTGCCCTTGAAGCTTGACGAAGTGTTTAAAACACTTGCAAGGTGTTTTACACAAGGTGCGAGACTTGTTATTAGCCATCCCCAAGGAAGAGAAGTTTTGGAGCAGCAACGACGACAGTATCCAGATGTTGTAACTTCTGACTTGCCTGAGAAGAGTACTTTAGAGGAAGCGGCAACCGAACATTCTTTCGAATTAACCGAATATGTTGATGAACCTTGTTTTTATCTTGCTGTATTAAAGTTTGTTGGGGCAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.25

Weight (kDa)

5.37

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41950
fragaria_vesca	FvH4_6g21880 FvH4_6g21880 FvH4_6g21880
malus_domestica	MD12G1054600.v1.1 MD14G1054000.v1.1
prunus_persica	Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1
pyrus_communis	pycom14g04450
rosa_chinensis	RchiOBHm_Chr3g0479231
rosa_laevigata	RLG00000023592
rosa_multiflora	Rmu_sc0002978.1_g000011
rosa_roxburghii	Rroxscaffold_6G00402510
rosa_rugosa	Rorug03G0172900
rosa_samantha	Rh3AG224100 Rh3BG257000 Rh3CG252600 Rh3DG248800
rosa_wichuraiana	Rw3G020080 Rw3G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccB1I	GGYRCC	2 cut(s)	194, 532
AciI	CCGC	2 cut(s)	333, 740
AclWI	GGATC	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	533
AdeI	CACNNNGTG	1 cut(s)	626
AfaI	GTAC	2 cut(s)	519, 727
AflII	CTTAAG	1 cut(s)	311
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	6 cut(s)	71, 347, 357, 372, 407, 580
AluBI	AGCT	3 cut(s)	353, 461, 583
AluI	AGCT	3 cut(s)	353, 461, 583
Alw26I	GTCTC	2 cut(s)	428, 625
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	673
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	293, 405
AsuII	TTCGAA	1 cut(s)	759
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	576
BaeI	ACNNNNGTAYC	2 cut(s)	671, 704
BanI	GGYRCC	2 cut(s)	194, 532
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	2 cut(s)	214, 654
BceAI	ACGGC	2 cut(s)	216, 554
BciVI	GTATCC	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	428, 625
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	536
BfrI	CTTAAG	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	699
BisI	GCNGC	2 cut(s)	674, 741
BlsI	GCNGC	2 cut(s)	675, 742
BmcAI	AGTACT	1 cut(s)	727
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	3 cut(s)	196, 204, 534
Bpu14I	TTCGAA	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	198, 652
Bse1I	ACTGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	198, 652
BseGI	GGATG	1 cut(s)	646
BseMII	CTCAG	2 cut(s)	243, 708
BseNI	ACTGG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	1 cut(s)	685
BshNI	GGYRCC	2 cut(s)	194, 532
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	428, 625
BsmFI	GGGAC	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	759
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	2 cut(s)	319, 394
BspACI	CCGC	2 cut(s)	333, 740
BspCNI	CTCAG	2 cut(s)	244, 709
BspLI	GGNNCC	3 cut(s)	196, 204, 534
BspMAI	CTGCAG	1 cut(s)	422
BspPI	GGATC	1 cut(s)	402
BspT104I	TTCGAA	1 cut(s)	759
BspT107I	GGYRCC	2 cut(s)	194, 532
BspTI	CTTAAG	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	198, 652
BssMI	GATC	2 cut(s)	319, 394
BssNI	GRCGYC	1 cut(s)	533
BssT1I	CCWWGG	1 cut(s)	652
Bst4CI	ACNGT	2 cut(s)	101, 687
Bst6I	CTCTTC	2 cut(s)	652, 716
BstACI	GRCGYC	1 cut(s)	533
BstAFI	CTTAAG	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	759
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	252, 538, 717
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	646
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	2 cut(s)	322, 397
BstMAI	GTCTC	2 cut(s)	428, 625
BstMBI	GATC	2 cut(s)	319, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	580
BstNSI	RCATGY	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	576
BstV1I	GCAGC	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	463
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	518, 726
CviAII	CATG	2 cut(s)	86, 440
CviJI	RGCY	6 cut(s)	203, 353, 461, 569, 583, 645
CviKI_1	RGCY	6 cut(s)	203, 353, 461, 569, 583, 645
CviQI	GTAC	2 cut(s)	518, 726
DdeI	CTNAG	3 cut(s)	252, 538, 717
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	2 cut(s)	321, 396
DpnII	GATC	2 cut(s)	319, 394
DraI	TTTAAA	1 cut(s)	598
DraIII	CACNNNGTG	1 cut(s)	626
Eam1104I	CTCTTC	2 cut(s)	652, 716
EarI	CTCTTC	2 cut(s)	652, 716
Eco130I	CCWWGG	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	402
EcoRI	GAATTC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	652
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	2 cut(s)	89, 443
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	85, 439
Fnu4HI	GCNGC	2 cut(s)	674, 741
FokI	GGATG	1 cut(s)	633
Fsp4HI	GCNGC	2 cut(s)	674, 741
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	2 cut(s)	674, 741
HaeII	RGCGCY	1 cut(s)	536
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	533
Hin1II	CATG	2 cut(s)	89, 443
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	2 cut(s)	351, 581
HinfI	GANTC	4 cut(s)	115, 275, 407, 443
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	293, 405
Hpy188I	TCNGA	2 cut(s)	382, 709
Hpy188III	TCNNGA	2 cut(s)	272, 692
Hpy99I	CGWCG	1 cut(s)	684
HpyAV	CCTTC	3 cut(s)	209, 377, 572
HpyCH4III	ACNGT	2 cut(s)	101, 687
HpyCH4V	TGCA	4 cut(s)	158, 172, 420, 608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	580
HpyF3I	CTNAG	3 cut(s)	252, 538, 717
Hsp92I	GRCGYC	1 cut(s)	533
Hsp92II	CATG	2 cut(s)	89, 443
HspAI	GCGC	1 cut(s)	533
KasI	GGCGCC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	319, 394
LmnI	GCTCC	2 cut(s)	208, 670
Lsp1109I	GCAGC	1 cut(s)	685
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	2 cut(s)	321, 396
MboI	GATC	2 cut(s)	319, 394
MboII	GAAGA	3 cut(s)	359, 669, 733
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	4 cut(s)	4, 372, 506, 761
Mly113I	GGCGCC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	2 cut(s)	90, 727
MseI	TTAA	6 cut(s)	312, 468, 489, 597, 764, 806
MspCI	CTTAAG	1 cut(s)	311
MspI	CCGG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	580
NarI	GGCGCC	1 cut(s)	533
NdeII	GATC	2 cut(s)	319, 394
NlaIII	CATG	2 cut(s)	89, 443
NlaIV	GGNNCC	3 cut(s)	196, 204, 534
NspI	RCATGY	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	759
PciI	ACATGT	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	765
PfeI	GAWTC	4 cut(s)	115, 275, 407, 443
PkrI	GCNGC	2 cut(s)	675, 742
PluTI	GGCGCC	1 cut(s)	536
PscI	ACATGT	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	196, 204, 534
PspPI	GGNCC	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	58
RsaI	GTAC	2 cut(s)	519, 727
RsaNI	GTAC	2 cut(s)	518, 726
SaqAI	TTAA	6 cut(s)	312, 468, 489, 597, 764, 806
SatI	GCNGC	2 cut(s)	674, 741
Sau3AI	GATC	2 cut(s)	319, 394
Sau96I	GGNCC	1 cut(s)	264
ScaI	AGTACT	1 cut(s)	727
SduI	GDGCHC	1 cut(s)	576
SfcI	CTRYAG	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	759
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	4, 372, 506, 761
SsiI	CCGC	2 cut(s)	333, 740
SspDI	GGCGCC	1 cut(s)	532
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	2 cut(s)	101, 687
TaqI	TCGA	1 cut(s)	759
TasI	AATT	4 cut(s)	4, 372, 506, 761
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	4 cut(s)	115, 275, 407, 443
Tru1I	TTAA	6 cut(s)	312, 468, 489, 597, 764, 806
Tru9I	TTAA	6 cut(s)	312, 468, 489, 597, 764, 806
TseI	GCWGC	1 cut(s)	673
TspDTI	ATGAA	4 cut(s)	17, 132, 228, 795
Vha464I	CTTAAG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.