Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002978.1

Orthogroup ID

OG0010131

Physical Location & Seq

Genomic Coordinates Reverse (-)

52237 .. 53350

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002978.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgaattctgttttctttccgttacctggctgccagtttctcttaccttgtcgtcaaaaacaaccccaatgcattctaaccaaccgtgtctgtcatcagaacacctacgtctctcctctttctctttcatttccgtttctttcacatcattctttgcgtgctcgcttatcacctgttggtgctacagttccatcaaatgaaggagtagttactgaaggagtggtgtctgtaatcaactttgaagattttgctgagaaagattggtcatttcttgattcagataatttcagttctgaagaagataggctaaaggttgatcgcattatatccgcaggagagattcaagaaacatctagggttatggtttcagttggttctgaagcatttgtggatcaattggtggaatcatcaccatgcagtctgttgcttgttgtccatgattcactttttgtgttggccggtattaaagaaaaatatgacaaggttaagtgttggcaaggagaattgatatatgtacctgataagtgggctcctttagatgttgtgtttctctatttccttccagccatgccctttaaccttggacaggtgtttggagcagttgcaaaatgtttttcgccaggtgcaagactggttatcagccatccccaaggaagagatgttttagagaaacaacggcaacaatatccagatgttataacttctgacttgcctgagaagagtactctaaaggaagttgcagcagaacattttttcgaattaactgactatgtcgatgagcagggcctttatcttgctgtattgaagtttgtgggggcaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

30.61

Weight (kDa)

5.0

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41950
fragaria_vesca	FvH4_6g21880 FvH4_6g21880 FvH4_6g21880
malus_domestica	MD12G1054600.v1.1 MD14G1054000.v1.1
prunus_persica	Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1 Prupe.7G081100_v2.0.a1
pyrus_communis	pycom14g04450
rosa_chinensis	RchiOBHm_Chr3g0479231
rosa_laevigata	RLG00000023592
rosa_multiflora	Rmu_sc0002978.1_g000011
rosa_roxburghii	Rroxscaffold_6G00402510
rosa_rugosa	Rorug03G0172900
rosa_samantha	Rh3AG224100 Rh3BG257000 Rh3CG252600 Rh3DG248800
rosa_wichuraiana	Rw3G020080 Rw3G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	3 cut(s)	234, 315, 399
AfaI	GTAC	2 cut(s)	516, 724
AfiI	CCNNNNNNNGG	2 cut(s)	26, 586
AgsI	TTSAA	3 cut(s)	242, 344, 805
AjnI	CCWGG	2 cut(s)	25, 619
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	2 cut(s)	456, 784
ApeKI	GCWGC	2 cut(s)	30, 740
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	784
AsuHPI	GGTGA	2 cut(s)	162, 402
AsuII	TTCGAA	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	17, 752
BccI	CCATC	2 cut(s)	199, 651
BceAI	ACGGC	1 cut(s)	692
BciT130I	CCWGG	2 cut(s)	27, 621
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	31, 741
BlsI	GCNGC	2 cut(s)	32, 742
BmcAI	AGTACT	1 cut(s)	724
Bme1390I	CCNGG	2 cut(s)	27, 621
BmgT120I	GGNCC	1 cut(s)	784
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	2 cut(s)	27, 621
Bpu14I	TTCGAA	1 cut(s)	756
BsaJI	CCNNGG	2 cut(s)	580, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 586
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	2 cut(s)	34, 636
BseBI	CCWGG	2 cut(s)	27, 621
BseDI	CCNNGG	2 cut(s)	580, 649
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	2 cut(s)	26, 586
BseMII	CTCAG	2 cut(s)	243, 705
BseNI	ACTGG	2 cut(s)	34, 636
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	2 cut(s)	17, 752
BshFI	GGCC	2 cut(s)	458, 786
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	459
BslI	CCNNNNNNNGG	2 cut(s)	26, 586
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	458, 786
Bsp119I	TTCGAA	1 cut(s)	756
Bsp1286I	GDGCHC	2 cut(s)	163, 532
Bsp143I	GATC	2 cut(s)	316, 391
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	2 cut(s)	458, 786
BspCNI	CTCAG	2 cut(s)	244, 706
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	34, 636
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	580, 649
BssMI	GATC	2 cut(s)	316, 391
BssT1I	CCWWGG	2 cut(s)	580, 649
Bst2UI	CCWGG	2 cut(s)	27, 621
Bst4CI	ACNGT	2 cut(s)	86, 187
Bst6I	CTCTTC	2 cut(s)	649, 713
BstBI	TTCGAA	1 cut(s)	756
BstC8I	GCNNGC	2 cut(s)	159, 163
BstDEI	CTNAG	2 cut(s)	252, 714
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	643
BstKTI	GATC	2 cut(s)	319, 394
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	316, 391
BstNI	CCWGG	2 cut(s)	27, 621
BstSCI	CCNGG	2 cut(s)	25, 619
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	17, 752
BsuRI	GGCC	2 cut(s)	458, 786
BtsCI	GGATG	1 cut(s)	643
Cac8I	GCNNGC	2 cut(s)	159, 163
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	784
Csp6I	GTAC	2 cut(s)	515, 723
CviAII	CATG	3 cut(s)	414, 437, 568
CviJI	RGCY	7 cut(s)	30, 307, 458, 530, 566, 642, 786
CviKI_1	RGCY	7 cut(s)	30, 307, 458, 530, 566, 642, 786
CviQI	GTAC	2 cut(s)	515, 723
DdeI	CTNAG	2 cut(s)	252, 714
DpnI	GATC	2 cut(s)	318, 393
DpnII	GATC	2 cut(s)	316, 391
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	2 cut(s)	649, 713
EarI	CTCTTC	2 cut(s)	649, 713
Eco130I	CCWWGG	2 cut(s)	580, 649
Eco24I	GRGCYC	1 cut(s)	532
Eco57I	CTGAAG	3 cut(s)	234, 315, 399
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	784
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	25, 619
EcoT14I	CCWWGG	2 cut(s)	580, 649
EcoT22I	ATGCAT	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	2 cut(s)	580, 649
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	3 cut(s)	417, 440, 571
FatI	CATG	3 cut(s)	413, 436, 567
Fnu4HI	GCNGC	2 cut(s)	31, 741
FokI	GGATG	1 cut(s)	630
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	2 cut(s)	31, 741
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	2 cut(s)	31, 741
HaeIII	GGCC	2 cut(s)	458, 786
HapII	CCGG	1 cut(s)	459
Hin1II	CATG	3 cut(s)	417, 440, 571
HinfI	GANTC	4 cut(s)	275, 340, 404, 440
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	162, 402
Hpy188I	TCNGA	5 cut(s)	99, 280, 295, 379, 706
Hpy188III	TCNNGA	3 cut(s)	272, 344, 689
HpyAV	CCTTC	3 cut(s)	194, 209, 569
HpyCH4III	ACNGT	2 cut(s)	86, 187
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	5 cut(s)	72, 417, 605, 626, 740
HpyF3I	CTNAG	2 cut(s)	252, 714
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	417, 440, 571
Kzo9I	GATC	2 cut(s)	316, 391
LmnI	GCTCC	2 cut(s)	535, 596
Lsp1109I	GCAGC	2 cut(s)	17, 752
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	21, 208
MalI	GATC	2 cut(s)	318, 393
MboI	GATC	2 cut(s)	316, 391
MboII	GAAGA	5 cut(s)	254, 308, 311, 666, 730
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	163, 532
MluCI	AATT	5 cut(s)	4, 283, 395, 503, 758
MnlI	CCTC	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	74
MseI	TTAA	4 cut(s)	465, 486, 576, 761
MslI	CAYNNNNRTG	1 cut(s)	412
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	2 cut(s)	27, 621
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	27, 621
NdeII	GATC	2 cut(s)	316, 391
NlaIII	CATG	3 cut(s)	417, 440, 571
NlaIV	GGNNCC	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	756
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	275, 340, 404, 440
PflFI	GACNNNGTC	1 cut(s)	770
PkrI	GCNGC	2 cut(s)	32, 742
PsiI	TTATAA	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	25, 619
PspGI	CCWGG	2 cut(s)	25, 619
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	784
PsyI	GACNNNGTC	1 cut(s)	770
RsaI	GTAC	2 cut(s)	516, 724
RsaNI	GTAC	2 cut(s)	515, 723
RseI	CAYNNNNRTG	1 cut(s)	412
SaqAI	TTAA	4 cut(s)	465, 486, 576, 761
SatI	GCNGC	2 cut(s)	31, 741
Sau3AI	GATC	2 cut(s)	316, 391
Sau96I	GGNCC	1 cut(s)	784
ScaI	AGTACT	1 cut(s)	724
ScrFI	CCNGG	2 cut(s)	27, 621
SduI	GDGCHC	2 cut(s)	163, 532
SfcI	CTRYAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	412
Sse9I	AATT	5 cut(s)	4, 283, 395, 503, 758
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	25, 619
StyI	CCWWGG	2 cut(s)	580, 649
TaaI	ACNGT	2 cut(s)	86, 187
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	756, 774
TasI	AATT	5 cut(s)	4, 283, 395, 503, 758
TatI	WGTACW	1 cut(s)	722
TfiI	GAWTC	4 cut(s)	275, 340, 404, 440
Tru1I	TTAA	4 cut(s)	465, 486, 576, 761
Tru9I	TTAA	4 cut(s)	465, 486, 576, 761
TseI	GCWGC	2 cut(s)	30, 740
TspDTI	ATGAA	3 cut(s)	17, 117, 213
TspGWI	ACGGA	2 cut(s)	9, 123
Tth111I	GACNNNGTC	1 cut(s)	770
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	1 cut(s)	4
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	724
Zsp2I	ATGCAT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.