Rroxscaffold_6G00402510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0010131
Physical Location & Seq
Reverse (-)
24961452 .. 24963228
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402510.1

Sequence Viewer

Length: 822 bp
ATGAATTCTGTTTTCTTTCCGTTACCTAGCTGCCAGTTTCTCTTACCTTGTCTTCAAAAACAACCCCAATGCATTCTAACCAACCGTGTCTGTCATCGGAACACCTACGTCTCTCTTTCTCTTTCACTTCCGTTTCTTTCACATCATTCTTTGCGTGCTCGCTTATCACCTGTTGGTGCTACAGTTCCATCAAATGAAGGAGTAGTTACTGAAGGAGTGGTGTCTGTAATCAACTTTGAAGATTTTGCTGAGAAAGATTGGTCATTTCTTGATTCAGATAATTTCAGTTCCGAAGAAGATAGGCTAAAGGTTGATCGCATTATATCCGCAGGAGAGATTCAAGAAACATCTAGGGTTATGGTTTCAGTTGGTTCTGAAGCATTTGTGGATCAATTGGTGGAATCATCACCATGCAGTCTGTTGCTTGTTGTCCACGATTCACTTTTTGTGTTGGCCGGCATTAAAGAAAAATATGACAAGGTTAAGTGTTGGCAAGGAGAATTGATATATGTACCTGATAAGTGGGCTCCTTTAGATGTTGTGTTTCTCTATTTCCTTCCAGCCGTGCCCTTTAACCTTGGACAGGTGTTTGGAGCAGTTGCTAAATGTTTTTCTCCAGGTGCAAGACTGGTTATCAGCCATCCCCAAGGAAGAGATGTTTTAGAGAAACAACGGCAACAATATCCAGATGTTATAACTTCTGACTTGCCTGAGAAGAGTACTCTAAAGGAAGTTGCAGCAGAACATTTTTTTGAATTAACTGACTATGTCGATGAGCAGGGCCTTTATCTTGCTGTATTGAAGTTTGTGGGGGCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.47

Weight (kDa)

5.0

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 695
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 231, 396
AfaI GTAC 2 cut(s) 513, 721
AfiI CCNNNNNNNGG 1 cut(s) 583
AgsI TTSAA 5 cut(s) 56, 239, 341, 755, 802
AjnI CCWGG 1 cut(s) 616
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 396
AoxI GGCC 2 cut(s) 453, 781
ApeKI GCWGC 2 cut(s) 30, 737
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 781
AsuHPI GGTGA 2 cut(s) 159, 399
BaeGI GKGCMC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 17, 749
BccI CCATC 2 cut(s) 196, 648
BceAI ACGGC 2 cut(s) 548, 689
BciT130I CCWGG 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 27, 351
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 2 cut(s) 31, 738
BlsI GCNGC 2 cut(s) 32, 739
BmcAI AGTACT 1 cut(s) 721
Bme1390I CCNGG 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 577, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse118I RCCGGY 1 cut(s) 455
Bse1I ACTGG 2 cut(s) 34, 633
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 2 cut(s) 577, 646
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 240, 702
BseNI ACTGG 2 cut(s) 34, 633
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 2 cut(s) 17, 749
BshFI GGCC 2 cut(s) 455, 783
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 2 cut(s) 455, 783
Bsp1286I GDGCHC 3 cut(s) 160, 529, 570
Bsp143I GATC 2 cut(s) 313, 388
BspACI CCGC 1 cut(s) 327
BspANI GGCC 2 cut(s) 455, 783
BspCNI CTCAG 2 cut(s) 241, 703
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 455
BsrI ACTGG 2 cut(s) 34, 633
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 2 cut(s) 577, 646
BssMI GATC 2 cut(s) 313, 388
BssT1I CCWWGG 2 cut(s) 577, 646
Bst2UI CCWGG 1 cut(s) 618
Bst4CI ACNGT 2 cut(s) 86, 184
Bst6I CTCTTC 2 cut(s) 646, 710
BstC8I GCNNGC 3 cut(s) 156, 160, 457
BstDEI CTNAG 2 cut(s) 249, 711
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 2 cut(s) 316, 391
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 313, 388
BstNI CCWGG 1 cut(s) 618
BstSCI CCNGG 1 cut(s) 616
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 17, 749
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 2 cut(s) 455, 783
BtsCI GGATG 1 cut(s) 640
Cac8I GCNNGC 3 cut(s) 156, 160, 457
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 781
Csp6I GTAC 2 cut(s) 512, 720
CviAII CATG 1 cut(s) 411
CviJI RGCY 7 cut(s) 30, 304, 455, 527, 563, 639, 783
CviKI_1 RGCY 7 cut(s) 30, 304, 455, 527, 563, 639, 783
CviQI GTAC 2 cut(s) 512, 720
DdeI CTNAG 2 cut(s) 249, 711
DpnI GATC 2 cut(s) 315, 390
DpnII GATC 2 cut(s) 313, 388
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 2 cut(s) 646, 710
EarI CTCTTC 2 cut(s) 646, 710
Eco130I CCWWGG 2 cut(s) 577, 646
Eco24I GRGCYC 1 cut(s) 529
Eco57I CTGAAG 2 cut(s) 231, 396
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 781
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 2 cut(s) 577, 646
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 577, 646
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 414
FaiI YATR 8 cut(s) 323, 359, 412, 474, 508, 510, 695, 768
FatI CATG 1 cut(s) 410
Fnu4HI GCNGC 2 cut(s) 31, 738
FokI GGATG 1 cut(s) 627
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 2 cut(s) 31, 738
FspBI CTAG 2 cut(s) 27, 351
GluI GCNGC 2 cut(s) 31, 738
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 2 cut(s) 455, 783
HapII CCGG 1 cut(s) 456
Hin1II CATG 1 cut(s) 414
HinfI GANTC 4 cut(s) 272, 337, 401, 437
HpaII CCGG 1 cut(s) 456
HphI GGTGA 2 cut(s) 159, 399
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 5 cut(s) 99, 277, 292, 376, 703
Hpy188III TCNNGA 3 cut(s) 269, 341, 686
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 191, 206, 566
HpyCH4III ACNGT 2 cut(s) 86, 184
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 4 cut(s) 72, 414, 623, 737
HpyF3I CTNAG 2 cut(s) 249, 711
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 414
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Kzo9I GATC 2 cut(s) 313, 388
LmnI GCTCC 2 cut(s) 532, 593
Lsp1109I GCAGC 2 cut(s) 17, 749
MaeI CTAG 2 cut(s) 27, 351
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 21, 205
MalI GATC 2 cut(s) 315, 390
MboI GATC 2 cut(s) 313, 388
MboII GAAGA 6 cut(s) 44, 251, 305, 308, 663, 727
MfeI CAATTG 1 cut(s) 392
MhlI GDGCHC 3 cut(s) 160, 529, 570
MluCI AATT 5 cut(s) 4, 280, 392, 500, 755
Mph1103I ATGCAT 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 455
MseI TTAA 4 cut(s) 462, 483, 573, 758
MslI CAYNNNNRTG 1 cut(s) 409
MspI CCGG 1 cut(s) 456
MspR9I CCNGG 1 cut(s) 618
MunI CAATTG 1 cut(s) 392
Mva1269I GAATGC 1 cut(s) 72
MvaI CCWGG 1 cut(s) 618
NaeI GCCGGC 1 cut(s) 457
NdeII GATC 2 cut(s) 313, 388
NgoMIV GCCGGC 1 cut(s) 455
NlaIII CATG 1 cut(s) 414
NlaIV GGNNCC 1 cut(s) 528
NsiI ATGCAT 1 cut(s) 74
PctI GAATGC 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 457
PfeI GAWTC 4 cut(s) 272, 337, 401, 437
PflFI GACNNNGTC 1 cut(s) 767
PkrI GCNGC 2 cut(s) 32, 739
PsiI TTATAA 1 cut(s) 695
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 1 cut(s) 781
PsyI GACNNNGTC 1 cut(s) 767
RsaI GTAC 2 cut(s) 513, 721
RsaNI GTAC 2 cut(s) 512, 720
RseI CAYNNNNRTG 1 cut(s) 409
SaqAI TTAA 4 cut(s) 462, 483, 573, 758
SatI GCNGC 2 cut(s) 31, 738
Sau3AI GATC 2 cut(s) 313, 388
Sau96I GGNCC 1 cut(s) 781
ScaI AGTACT 1 cut(s) 721
ScrFI CCNGG 1 cut(s) 618
SduI GDGCHC 3 cut(s) 160, 529, 570
SfcI CTRYAG 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 409
Sse9I AATT 5 cut(s) 4, 280, 392, 500, 755
SsiI CCGC 1 cut(s) 327
SspMI CTAG 2 cut(s) 27, 351
StyD4I CCNGG 1 cut(s) 616
StyI CCWWGG 2 cut(s) 577, 646
TaaI ACNGT 2 cut(s) 86, 184
TaiI ACGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 771
TasI AATT 5 cut(s) 4, 280, 392, 500, 755
TatI WGTACW 1 cut(s) 719
TfiI GAWTC 4 cut(s) 272, 337, 401, 437
Tru1I TTAA 4 cut(s) 462, 483, 573, 758
Tru9I TTAA 4 cut(s) 462, 483, 573, 758
TseI GCWGC 2 cut(s) 30, 737
TspDTI ATGAA 2 cut(s) 17, 210
TspGWI ACGGA 2 cut(s) 9, 120
Tth111I GACNNNGTC 1 cut(s) 767
XagI CCTNNNNNAGG 1 cut(s) 581
XapI RAATTY 1 cut(s) 4
XspI CTAG 2 cut(s) 27, 351
ZrmI AGTACT 1 cut(s) 721
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.