Rh3CG252600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0010131
Physical Location & Seq
Forward (+)
24600425 .. 24604792
4368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG252600.1

Sequence Viewer

Length: 681 bp
ATGAATTCTGTTTTCTTTCCGTTACCTAGCTGCCAGTTTCTCTTACCTTGTCGTCAAAAACAACCCCAATGCATTCTAACGAACCGTGTCTGTCATCGGAACACCTACGTCTCTCCTCTTTCTCTTTCATTTCCGTTTCTTTCACATCATTCTTTGCGTGCTCGCTTATCACCTGTTGGTGCTACAGTTCCATCAAATGAAGGAGTAGTTACTGAAGGAGTGGTGTCTGTAATCAACTTTGAAGATTTTACTGAGAAAGATTGGTCATTTCTTGATTCAGATAGTTTCAGTTCTGAAGAAGATAGGCTAAAGGTTGATCGCATTATATCCGCAGGAGAGATTCAAGAAACATCTAGGGTTATGGTTTCAGTTGGTTCTGAAGCATTTGTGGATCAATTGGTGGAATCATCACCATGCAGTCTGTTGCTTGTTGTCCATGATTCACTTTTTGTGTTGGCCGGTATTAAAGAAAAATATGACAAGGTTAAGTGTTGGCAAGGAGAATTGATATATGTACCTGATAAGTGGGCTCCTTTAGATGTTGTGTTTCTCTATTTCCTTCCAGCCGTGCCCTTTAACCTTGGACAGGTGTTTGGAGCAGTTGCAAAATGTTTTTCGCCAGGTGATTTTCATAATTTGATCAATATTTCTATGCATAGATGTCATGTGCGATTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.45

Weight (kDa)

5.78

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 330
AclWI GGATC 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 3 cut(s) 234, 315, 399
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 586
AgsI TTSAA 2 cut(s) 242, 344
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 399
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 162, 402, 635
BaeGI GKGCMC 1 cut(s) 573
BanII GRGCYC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 1 cut(s) 621
BclI TGATCA 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 27, 354
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 621
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 1 cut(s) 621
BsaJI CCNNGG 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 1 cut(s) 580
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 459
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 3 cut(s) 163, 532, 573
Bsp143I GATC 3 cut(s) 316, 391, 639
BspACI CCGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 580
BssMI GATC 3 cut(s) 316, 391, 639
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 2 cut(s) 86, 187
BstC8I GCNNGC 2 cut(s) 159, 163
BstDEI CTNAG 1 cut(s) 252
BstENI CCTNNNNNAGG 1 cut(s) 584
BstKTI GATC 3 cut(s) 319, 394, 642
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 3 cut(s) 316, 391, 639
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 619
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 573
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 159, 163
Cfr10I RCCGGY 1 cut(s) 458
Csp6I GTAC 1 cut(s) 515
CviAII CATG 3 cut(s) 414, 437, 665
CviJI RGCY 5 cut(s) 30, 307, 458, 530, 566
CviKI_1 RGCY 5 cut(s) 30, 307, 458, 530, 566
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 1 cut(s) 252
DpnI GATC 3 cut(s) 318, 393, 641
DpnII GATC 3 cut(s) 316, 391, 639
EaeI YGGCCR 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 532
Eco57I CTGAAG 3 cut(s) 234, 315, 399
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 580
EcoT22I ATGCAT 2 cut(s) 74, 657
EcoT38I GRGCYC 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 580
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 3 cut(s) 417, 440, 668
FatI CATG 3 cut(s) 413, 436, 664
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 1 cut(s) 31
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 2 cut(s) 27, 354
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 459
Hin1II CATG 3 cut(s) 417, 440, 668
HinfI GANTC 4 cut(s) 275, 340, 404, 440
HpaII CCGG 1 cut(s) 459
HphI GGTGA 3 cut(s) 162, 402, 635
Hpy188I TCNGA 4 cut(s) 99, 280, 295, 379
Hpy188III TCNNGA 2 cut(s) 272, 344
HpyAV CCTTC 3 cut(s) 194, 209, 569
HpyCH4III ACNGT 2 cut(s) 86, 187
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 4 cut(s) 72, 417, 605, 655
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 3 cut(s) 417, 440, 668
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 3 cut(s) 316, 391, 639
LmnI GCTCC 2 cut(s) 535, 596
LpnPI CCDG 9 cut(s) 47, 186, 318, 472, 531, 572, 576, 606, 633
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 27, 354
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 21, 208
MalI GATC 3 cut(s) 318, 393, 641
MboI GATC 3 cut(s) 316, 391, 639
MboII GAAGA 3 cut(s) 254, 308, 311
MfeI CAATTG 1 cut(s) 395
MhlI GDGCHC 3 cut(s) 163, 532, 573
MluCI AATT 4 cut(s) 4, 395, 503, 634
MnlI CCTC 1 cut(s) 126
Mph1103I ATGCAT 2 cut(s) 74, 657
MseI TTAA 3 cut(s) 465, 486, 576
MslI CAYNNNNRTG 1 cut(s) 412
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 621
MunI CAATTG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 72
MvaI CCWGG 1 cut(s) 621
NdeII GATC 3 cut(s) 316, 391, 639
NlaIII CATG 3 cut(s) 417, 440, 668
NlaIV GGNNCC 1 cut(s) 531
NsiI ATGCAT 2 cut(s) 74, 657
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 4 cut(s) 275, 340, 404, 440
PkrI GCNGC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 1 cut(s) 531
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 412
SaqAI TTAA 3 cut(s) 465, 486, 576
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 3 cut(s) 316, 391, 639
ScrFI CCNGG 1 cut(s) 621
SduI GDGCHC 3 cut(s) 163, 532, 573
SfcI CTRYAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 412
Sse9I AATT 4 cut(s) 4, 395, 503, 634
SsiI CCGC 1 cut(s) 330
SspI AATATT 1 cut(s) 646
SspMI CTAG 2 cut(s) 27, 354
StyD4I CCNGG 1 cut(s) 619
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 2 cut(s) 86, 187
TaiI ACGT 1 cut(s) 111
TasI AATT 4 cut(s) 4, 395, 503, 634
TfiI GAWTC 4 cut(s) 275, 340, 404, 440
Tru1I TTAA 3 cut(s) 465, 486, 576
Tru9I TTAA 3 cut(s) 465, 486, 576
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 4 cut(s) 17, 117, 213, 620
TspGWI ACGGA 2 cut(s) 9, 123
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 1 cut(s) 4
XspI CTAG 2 cut(s) 27, 354
Zsp2I ATGCAT 2 cut(s) 74, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.