FvH4_6g21880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010131
Physical Location & Seq
Forward (+)
15554156 .. 15556335
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21880.t2

Sequence Viewer

Length: 843 bp
ATGAATTCTGTTTTCTCATCCCAGTCTCTTTTCTTTGCATTCCCTAGCTTCCAGTTTCTTGTACCTTGTCCTCCAAAGCAACTTCAATGCATTGTAACCAACCGTGTGTGTCATCGTAACACCTATGTTTCTCCTCTATCTCTTTCGTTTCCGCTTCATTCACATTATTCTCTGCGTACTAGCTCATCACTTGTTGGTGCTACAGTTCCATCAGATGAAGGAGTAGTTACTGAAGGGGTAGTGTCTGTAATCAACTTCGAAGATGTTGCTGAGAAAGATTGGTCATTTCTTGATTCAGATGATTTCAGTTCTGAACAAGATAAACTAAAGGTTGAACGCATTATATCCGCAGGAGAGATTCAAGAAACTTCTAGGGTTATGGTTTCAGTTGGTTCTGAAGCGTTTGTGGATCAATTGGTTGAATCATCGCCATGCAGTATGTTGCTTGTTGTACATGATTCACTTTTTGTGCTGGCTGGCATTAAAGAAAAATATGACAAGGTTAAGTGTTGGCAAGGAGAATTGATATATGTACCTGATAAGTGGGCTCCTTTAGATGTTGTGTTTCTCTATTTCCTTCCAGCAGTGCCTTTTAACCATGGACAGGTGTTTGGAGCAGTTGCTAAATGTTTTTCTCCAGGTGCAAGACTGGTTATCAGCCATCCCCAAGGAAGAGAAGTTTTTGAGAAACAACGGCAACAATATCCAGATGTTATAACTTCGGAATTGCCTGAGAAGAGAACTCTAAAGGAAGTTGCAGCAGAACATTTTTTTGAATTAACTGACTATGTTGATGAGCAGGGCCTCTATCTTGCTGTATTGACGTTTGTGGGGGCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

31.29

Weight (kDa)

4.94

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 716
AciI CCGC 2 cut(s) 152, 348
AclWI GGATC 1 cut(s) 417
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 252, 417
AfaI GTAC 4 cut(s) 63, 178, 453, 534
AfiI CCNNNNNNNGG 1 cut(s) 604
AgsI TTSAA 5 cut(s) 86, 335, 362, 422, 776
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 2 cut(s) 48, 183
AluI AGCT 2 cut(s) 48, 183
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 1 cut(s) 417
AoxI GGCC 1 cut(s) 802
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 802
AsuII TTCGAA 1 cut(s) 258
BanII GRGCYC 1 cut(s) 550
BbvI GCAGC 1 cut(s) 770
BccI CCATC 2 cut(s) 217, 669
BceAI ACGGC 1 cut(s) 710
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 3 cut(s) 45, 180, 372
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 1 cut(s) 759
BlsI GCNGC 1 cut(s) 760
Bme1390I CCNGG 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 802
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 1 cut(s) 639
BmrI ACTGGG 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 598, 667
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse1I ACTGG 3 cut(s) 22, 52, 654
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 2 cut(s) 598, 667
BseGI GGATG 2 cut(s) 17, 661
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMII CTCAG 2 cut(s) 261, 723
BseNI ACTGG 3 cut(s) 22, 52, 654
BseRI GAGGAG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 770
BshFI GGCC 1 cut(s) 804
BslI CCNNNNNNNGG 1 cut(s) 604
BsmAI GTCTC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 1 cut(s) 804
Bsp119I TTCGAA 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 451
Bsp143I GATC 1 cut(s) 409
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 2 cut(s) 152, 348
BspANI GGCC 1 cut(s) 804
BspCNI CTCAG 2 cut(s) 262, 724
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 1 cut(s) 417
BspT104I TTCGAA 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 451
BsrI ACTGG 3 cut(s) 22, 52, 654
BssECI CCNNGG 2 cut(s) 598, 667
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 2 cut(s) 598, 667
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 2 cut(s) 104, 205
Bst6I CTCTTC 2 cut(s) 667, 731
BstAUI TGTACA 1 cut(s) 451
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 474, 478
BstDEI CTNAG 2 cut(s) 270, 732
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 2 cut(s) 17, 661
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 409
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 637
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 770
BsuRI GGCC 1 cut(s) 804
BtgI CCRYGG 1 cut(s) 598
BtgZI GCGATG 1 cut(s) 411
BtsCI GGATG 2 cut(s) 17, 661
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 2 cut(s) 474, 478
Cfr13I GGNCC 1 cut(s) 802
Csp6I GTAC 4 cut(s) 62, 177, 452, 533
CviAII CATG 3 cut(s) 432, 455, 599
CviJI RGCY 6 cut(s) 48, 183, 476, 548, 660, 804
CviKI_1 RGCY 6 cut(s) 48, 183, 476, 548, 660, 804
CviQI GTAC 4 cut(s) 62, 177, 452, 533
DdeI CTNAG 2 cut(s) 270, 732
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Eam1104I CTCTTC 2 cut(s) 667, 731
EarI CTCTTC 2 cut(s) 667, 731
Eco130I CCWWGG 2 cut(s) 598, 667
Eco24I GRGCYC 1 cut(s) 550
Eco57I CTGAAG 2 cut(s) 252, 417
EcoO109I RGGNCCY 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 598, 667
EcoT22I ATGCAT 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 2 cut(s) 598, 667
FaeI CATG 3 cut(s) 435, 458, 602
FatI CATG 3 cut(s) 431, 454, 598
Fnu4HI GCNGC 1 cut(s) 759
FokI GGATG 2 cut(s) 4, 648
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 1 cut(s) 759
FspBI CTAG 3 cut(s) 45, 180, 372
GluI GCNGC 1 cut(s) 759
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 1 cut(s) 804
Hin1II CATG 3 cut(s) 435, 458, 602
HinfI GANTC 4 cut(s) 293, 358, 422, 458
Hpy188I TCNGA 5 cut(s) 214, 298, 313, 397, 724
Hpy188III TCNNGA 3 cut(s) 290, 362, 707
HpyAV CCTTC 3 cut(s) 212, 227, 587
HpyCH4III ACNGT 2 cut(s) 104, 205
HpyCH4IV ACGT 1 cut(s) 824
HpyCH4V TGCA 5 cut(s) 38, 90, 435, 644, 758
HpyF3I CTNAG 2 cut(s) 270, 732
HpySE526I ACGT 1 cut(s) 824
Hsp92II CATG 3 cut(s) 435, 458, 602
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 2 cut(s) 553, 614
Lsp1109I GCAGC 1 cut(s) 770
MaeI CTAG 3 cut(s) 45, 180, 372
MaeII ACGT 1 cut(s) 824
MaeIII GTNAC 3 cut(s) 94, 116, 226
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 3 cut(s) 272, 684, 748
MfeI CAATTG 1 cut(s) 413
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 5 cut(s) 4, 413, 521, 725, 776
MnlI CCTC 3 cut(s) 81, 144, 815
Mph1103I ATGCAT 1 cut(s) 92
MseI TTAA 4 cut(s) 483, 504, 594, 779
MslI CAYNNNNRTG 1 cut(s) 430
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 639
NcoI CCATGG 1 cut(s) 598
NdeII GATC 1 cut(s) 409
NlaIII CATG 3 cut(s) 435, 458, 602
NlaIV GGNNCC 1 cut(s) 549
NsiI ATGCAT 1 cut(s) 92
NspV TTCGAA 1 cut(s) 258
PctI GAATGC 1 cut(s) 38
PfeI GAWTC 4 cut(s) 293, 358, 422, 458
PkrI GCNGC 1 cut(s) 760
PsiI TTATAA 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 1 cut(s) 802
RsaI GTAC 4 cut(s) 63, 178, 453, 534
RsaNI GTAC 4 cut(s) 62, 177, 452, 533
RseI CAYNNNNRTG 1 cut(s) 430
SaqAI TTAA 4 cut(s) 483, 504, 594, 779
SatI GCNGC 1 cut(s) 759
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 1 cut(s) 802
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 1 cut(s) 550
SfcI CTRYAG 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 430
Sse9I AATT 5 cut(s) 4, 413, 521, 725, 776
SsiI CCGC 2 cut(s) 152, 348
SspMI CTAG 3 cut(s) 45, 180, 372
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 2 cut(s) 598, 667
TaaI ACNGT 2 cut(s) 104, 205
TaiI ACGT 1 cut(s) 827
TaqI TCGA 1 cut(s) 258
TasI AATT 5 cut(s) 4, 413, 521, 725, 776
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 4 cut(s) 293, 358, 422, 458
Tru1I TTAA 4 cut(s) 483, 504, 594, 779
Tru9I TTAA 4 cut(s) 483, 504, 594, 779
TscAI CASTG 1 cut(s) 591
TseI GCWGC 1 cut(s) 758
TspDTI ATGAA 3 cut(s) 17, 146, 231
TspRI CASTG 1 cut(s) 591
XapI RAATTY 1 cut(s) 4
XspI CTAG 3 cut(s) 45, 180, 372
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.