AT2G42070

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016137
Physical Location & Seq
Reverse (-)
17549091 .. 17551364
2274 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42070.2

Sequence Viewer

Length: 843 bp
ATGCTAAAGGCCGTCCAGATCTTGGGTTGGTCATCAGGGTTAACCATCTCACAGAGATTGACCAAGACTCGCAAGTCCTCTACCGTCTCTTTCATCTCGTCATCTCTCAATCTCTCCTCTGTCACTTCGAGCTCTCCTCGGAGAATCTTCTCTTTCAAGCCAACCAGAATGTCTTCCTCACTTCCCGGGTCTGACCCAGTTGCAAATTCCCCGACTTTCGTCTCTGTTCAATCAGCTGGAGATGTTCGTAAGATAAAGTTCTGTCAATGGTGTGGAGGACCAACCAAGCATGAAATACCTGACGGTGAAGAGAAATTGAGAGCTATTTGCACACATTGCGGCAAAATCGCTTATCAGAATCCTAAGATGGTTGTTGGTTGCCTTATAGAGCATGAAGGAAAAGTTTTACTTTGCAAACGTAACATTCAACCTTCACACGGTTTATGGACTCTTCCTGCTGGTTATCTAGAAGTTGGAGAATCAGCTGCACAAGGAGCAATGAGGGAAACTTGGGAAGAAGCAGGAGCTACTGTGGAAGTTATTTCACCTTTTGCTCAACTTGATATTCCTCTTATTGGCCAAACTTATGTTATATTCTTAGCCAAACTGAAGAACCTGCATTTTGCACCTGGTCCTGAATCATTGGAGTGCCGTCTTTTTGCACTAGATGAGATACCGTTTGATTCCTTGGCTTTTTCATCTATATATGTTACCTTAAATTTGTACTTGGAAGATCTGAAAAAAGGGAAACTAAAGTTTCACTATGGTACGATAAATAAAAGGCCTGGAAGTAGTCCTTCAGATATTCGCGCCTTTAGTCTTGATTACCATCTGCAACCGTAA

Protein Analysis

280

Amino Acids

30.79

Weight (kDa)

9.02

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Nudix PF14803 86 - 119 5.1e-15 Nudix N-terminal
NUDIX PF00293 124 - 229 6.3e-16 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42070 AT2G42070
fragaria_vesca FvH4_6g22180
malus_domestica MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479531
rosa_laevigata RLG00000023561
rosa_multiflora Rmu_sc0004732.1_g000001
rosa_roxburghii Rroxscaffold_6G00402160
rosa_rugosa Rorug03G0176300
rosa_samantha Rh3AG227100 Rh3BG260300
rosa_wichuraiana Rw3G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
Acc36I ACCTGC 1 cut(s) 624
AccB7I CCANNNNNTGG 1 cut(s) 22
AccII CGCG 1 cut(s) 810
AciI CCGC 1 cut(s) 339
AcoI YGGCCR 1 cut(s) 577
AcsI RAATTY 2 cut(s) 205, 718
AcuI CTGAAG 2 cut(s) 629, 783
AfaI GTAC 2 cut(s) 725, 769
AfiI CCNNNNNNNGG 3 cut(s) 22, 437, 575
AgsI TTSAA 3 cut(s) 157, 230, 428
AjnI CCWGG 2 cut(s) 628, 784
AluBI AGCT 5 cut(s) 132, 236, 323, 485, 527
AluI AGCT 5 cut(s) 132, 236, 323, 485, 527
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 91, 226
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 3 cut(s) 9, 577, 782
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 2 cut(s) 205, 718
Asp700I GAANNNNTTC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 812
AspS9I GGNCC 2 cut(s) 278, 632
AsuC2I CCSGG 2 cut(s) 186, 187
AsuHPI GGTGA 2 cut(s) 317, 537
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 2 cut(s) 278, 632
BalI TGGCCA 1 cut(s) 579
BanII GRGCYC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 472
BccI CCATC 3 cut(s) 53, 361, 837
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 2 cut(s) 630, 786
BcnI CCSGG 2 cut(s) 186, 187
BcoDI GTCTC 2 cut(s) 91, 226
BfaI CTAG 2 cut(s) 467, 665
BfuAI ACCTGC 1 cut(s) 624
BglII AGATCT 2 cut(s) 18, 733
BisI GCNGC 2 cut(s) 340, 486
BlsI GCNGC 2 cut(s) 341, 487
Bme1390I CCNGG 4 cut(s) 186, 187, 630, 786
Bme18I GGWCC 2 cut(s) 278, 632
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 278, 632
BmrFI CCNGG 4 cut(s) 186, 187, 630, 786
BmrI ACTGGG 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 191
BoxI GACNNNNGTC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 258
BpuMI CCSGG 2 cut(s) 186, 187
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 3 cut(s) 137, 185, 687
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 437, 575
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 2 cut(s) 334, 504
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 2 cut(s) 630, 786
BseDI CCNNGG 3 cut(s) 137, 185, 687
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 3 cut(s) 22, 437, 575
BseMI GCAATG 2 cut(s) 334, 504
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 106, 126
BseXI GCAGC 1 cut(s) 472
BsgI GTGCAG 1 cut(s) 471
Bsh1236I CGCG 1 cut(s) 810
BshFI GGCC 3 cut(s) 11, 579, 784
BsiHKAI GWGCWC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 22, 437, 575
BsmAI GTCTC 2 cut(s) 91, 226
BsmBI CGTCTC 2 cut(s) 91, 226
BsnI GGCC 3 cut(s) 11, 579, 784
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 18, 733
BspACI CCGC 1 cut(s) 339
BspANI GGCC 3 cut(s) 11, 579, 784
BspFNI CGCG 1 cut(s) 810
BspMI ACCTGC 1 cut(s) 624
BsrDI GCAATG 2 cut(s) 334, 504
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 137, 185, 687
BssMI GATC 2 cut(s) 18, 733
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 2 cut(s) 630, 786
Bst4CI ACNGT 6 cut(s) 85, 305, 440, 532, 678, 840
Bst6I CTCTTC 2 cut(s) 303, 456
BstAPI GCANNNNNTGC 1 cut(s) 336
BstDEI CTNAG 2 cut(s) 363, 598
BstFNI CGCG 1 cut(s) 810
BstHHI GCGC 1 cut(s) 812
BstKTI GATC 2 cut(s) 21, 736
BstMAI GTCTC 2 cut(s) 91, 226
BstMBI GATC 2 cut(s) 18, 733
BstMWI GCNNNNNNNGC 2 cut(s) 336, 494
BstNI CCWGG 2 cut(s) 630, 786
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 184, 185, 628, 784
BstUI CGCG 1 cut(s) 810
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 18, 733
BstYI RGATCY 2 cut(s) 18, 733
BsuRI GGCC 3 cut(s) 11, 579, 784
BveI ACCTGC 1 cut(s) 624
CfoI GCGC 1 cut(s) 812
Cfr13I GGNCC 2 cut(s) 278, 632
Cfr9I CCCGGG 1 cut(s) 185
CsiI ACCWGGT 1 cut(s) 628
Csp6I GTAC 2 cut(s) 724, 768
CviAII CATG 2 cut(s) 290, 392
CviQI GTAC 2 cut(s) 724, 768
DdeI CTNAG 2 cut(s) 363, 598
DpnI GATC 2 cut(s) 20, 735
DpnII GATC 2 cut(s) 18, 733
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 577
Eam1104I CTCTTC 2 cut(s) 303, 456
EarI CTCTTC 2 cut(s) 303, 456
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 687
Eco147I AGGCCT 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 278, 632
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 629, 783
Eco88I CYCGRG 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 628, 784
EcoT14I CCWWGG 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 687
Esp3I CGTCTC 2 cut(s) 91, 226
FaeI CATG 2 cut(s) 293, 395
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 781, 813
FatI CATG 2 cut(s) 289, 391
Fnu4HI GCNGC 2 cut(s) 340, 486
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 340, 486
FspBI CTAG 2 cut(s) 467, 665
GlaI GCGC 1 cut(s) 811
GluI GCNGC 2 cut(s) 340, 486
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 3 cut(s) 11, 579, 784
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 812
Hin1II CATG 2 cut(s) 293, 395
Hin6I GCGC 1 cut(s) 810
HinP1I GCGC 1 cut(s) 810
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 7 cut(s) 67, 144, 358, 448, 479, 638, 683
HpaI GTTAAC 1 cut(s) 42
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 317, 537
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 5 cut(s) 141, 193, 357, 738, 802
Hpy188III TCNNGA 4 cut(s) 16, 467, 635, 821
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 3 cut(s) 389, 441, 807
HpyCH4III ACNGT 6 cut(s) 85, 305, 440, 532, 678, 840
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 8 cut(s) 203, 330, 414, 488, 619, 626, 662, 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 494
HpyF3I CTNAG 2 cut(s) 363, 598
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 2 cut(s) 293, 395
HspAI GCGC 1 cut(s) 810
KspAI GTTAAC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 18, 733
LmnI GCTCC 2 cut(s) 494, 524
Lsp1109I GCAGC 1 cut(s) 472
MabI ACCWGGT 1 cut(s) 628
MaeI CTAG 2 cut(s) 467, 665
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 3 cut(s) 121, 419, 709
MalI GATC 2 cut(s) 20, 735
MboI GATC 2 cut(s) 18, 733
MboII GAAGA 7 cut(s) 139, 165, 320, 443, 527, 622, 743
MflI RGATCY 2 cut(s) 18, 733
MhlI GDGCHC 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 579
MluCI AATT 3 cut(s) 205, 314, 718
MluNI TGGCCA 1 cut(s) 579
MlyI GAGTC 2 cut(s) 61, 442
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 7 cut(s) 88, 127, 147, 187, 269, 495, 579
Mox20I TGGCCA 1 cut(s) 579
MroXI GAANNNNTTC 1 cut(s) 172
MscI TGGCCA 1 cut(s) 579
MseI TTAA 2 cut(s) 41, 716
MslI CAYNNNNRTG 1 cut(s) 646
Msp20I TGGCCA 1 cut(s) 579
MspA1I CMGCKG 2 cut(s) 236, 485
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 4 cut(s) 186, 187, 630, 786
MvaI CCWGG 2 cut(s) 630, 786
MvnI CGCG 1 cut(s) 810
MwoI GCNNNNNNNGC 2 cut(s) 336, 494
NciI CCSGG 2 cut(s) 186, 187
NdeII GATC 2 cut(s) 18, 733
NlaIII CATG 2 cut(s) 293, 395
NmuCI GTSAC 1 cut(s) 121
PceI AGGCCT 1 cut(s) 784
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 5 cut(s) 144, 358, 479, 638, 683
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 2 cut(s) 341, 487
PleI GAGTC 2 cut(s) 61, 442
PpsI GAGTC 2 cut(s) 61, 442
PshAI GACNNNNGTC 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 628, 784
PspGI CCWGG 2 cut(s) 628, 784
PspPI GGNCC 2 cut(s) 278, 632
PsuI RGATCY 2 cut(s) 18, 733
PvuII CAGCTG 2 cut(s) 236, 485
RsaI GTAC 2 cut(s) 725, 769
RsaNI GTAC 2 cut(s) 724, 768
RseI CAYNNNNRTG 1 cut(s) 646
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 41, 716
SatI GCNGC 2 cut(s) 340, 486
Sau3AI GATC 2 cut(s) 18, 733
Sau96I GGNCC 2 cut(s) 278, 632
SchI GAGTC 2 cut(s) 61, 442
ScrFI CCNGG 4 cut(s) 186, 187, 630, 786
SduI GDGCHC 1 cut(s) 134
SexAI ACCWGGT 1 cut(s) 628
SinI GGWCC 2 cut(s) 278, 632
SmaI CCCGGG 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 646
Sse9I AATT 3 cut(s) 205, 314, 718
SseBI AGGCCT 1 cut(s) 784
SsiI CCGC 1 cut(s) 339
SspMI CTAG 2 cut(s) 467, 665
SstI GAGCTC 1 cut(s) 134
StuI AGGCCT 1 cut(s) 784
StyD4I CCNGG 4 cut(s) 184, 185, 628, 784
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 6 cut(s) 85, 305, 440, 532, 678, 840
TaiI ACGT 1 cut(s) 421
TaqI TCGA 1 cut(s) 128
TasI AATT 3 cut(s) 205, 314, 718
TatI WGTACW 1 cut(s) 723
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 5 cut(s) 144, 358, 479, 638, 683
Tru1I TTAA 2 cut(s) 41, 716
Tru9I TTAA 2 cut(s) 41, 716
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 4 cut(s) 82, 306, 408, 687
TspMI CCCGGG 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 278, 632
XapI RAATTY 2 cut(s) 205, 718
XbaI TCTAGA 1 cut(s) 466
XmaI CCCGGG 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 2 cut(s) 467, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.