Rw3G020290

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016137
Physical Location & Seq
Reverse (-)
23734334 .. 23737208
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020290.1

Sequence Viewer

Length: 870 bp
ATGCTCAAAACCATACAGATCTTGGGGTCTTCATCTGGGTTGGTTAAGCCCCAAACTACCAGTTGTTGTAGACTCTCCTTCTTTTCTTCCATCTCCACCAAACCTTTCTCTTCTTCTTCTTCTTCCTCAAGACCAACCAAGTTGCTATTTCCGGGACCCTCAGCTCGCCGGACTCGTTTCGGAGCTTTCAGCATGTCCTCGGCTCATTCCGGGTCAAACCCAGCTCCCCCTTCTTCTTCATCATCCACTGTGGTTCAGTCAGTTGGCAATGCTCGTAAGATCAATTTCTGCCAGTGGTGCGGTGGTGCAACAAAGCATGAGGTACCTGATGGAGAGGAGAAAATAAGAGCTATTTGCACCGTTTGCGACAGGATTGCCTATGAGAACCCGAAAATGGTTGTGGGATGTTTGATTGAGCATGATAACATGGTTTTACTTTGCAAGAGGAACATTCAACCATCATATGGTCTCTGGACTCTTCCAGCAGGTTACCTAGAAATTGGGGAATCAGCTGCAGAAGGAGCAATAAGGGAAACCTGGGAAGAAGCATGTGCAGAAGTTGAAATTGTATCACCTTTTGCTCAGTTGGACATCCCTCTAATAGGCCAGACTTACATAATTTTCTTAGCAAGGCTGAAGAAAGCCCAGTTTTCACCGGGTCCTGAATCATCAGAATGCCGACTGTTTGCACTTGATGATATACCTTTTGATTCTCTGTCATTCTCGTCAATGGTAGTTACTTTAAAATTGTACGCTGAAGATGTGAAGGCCGGGAAAGTTAAGTTCCACTATGGAACCATTAATAAAAGGCCTGGCACAAGTCCTTCTGACATTAATGCCTATACTTTGGATCATCATATGCAGTCCTGA

Protein Analysis

289

Amino Acids

31.43

Weight (kDa)

8.29

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Nudix PF14803 95 - 128 1.9e-12 Nudix N-terminal
NUDIX PF00293 132 - 234 3.9e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42070 AT2G42070
fragaria_vesca FvH4_6g22180
malus_domestica MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479531
rosa_laevigata RLG00000023561
rosa_multiflora Rmu_sc0004732.1_g000001
rosa_roxburghii Rroxscaffold_6G00402160
rosa_rugosa Rorug03G0176300
rosa_samantha Rh3AG227100 Rh3BG260300
rosa_wichuraiana Rw3G020290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
Acc65I GGTACC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 464
AccI GTMKAC 1 cut(s) 70
AciI CCGC 1 cut(s) 300
AclWI GGATC 1 cut(s) 858
AcuI CTGAAG 2 cut(s) 656, 777
AfaI GTAC 2 cut(s) 324, 752
AfiI CCNNNNNNNGG 3 cut(s) 394, 464, 602
AgsI TTSAA 2 cut(s) 455, 563
AjnI CCWGG 2 cut(s) 536, 811
AluBI AGCT 5 cut(s) 164, 185, 224, 350, 512
AluI AGCT 5 cut(s) 164, 185, 224, 350, 512
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 1 cut(s) 858
AoxI GGCC 3 cut(s) 604, 768, 809
ApeKI GCWGC 1 cut(s) 512
AseI ATTAAT 2 cut(s) 801, 834
Asp718I GGTACC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 155, 659
AsuC2I CCSGG 4 cut(s) 153, 211, 657, 772
AsuHPI GGTGA 2 cut(s) 564, 645
AvaII GGWCC 2 cut(s) 155, 659
BanI GGYRCC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 21
BbvCI CCTCAGC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 499
BccI CCATC 3 cut(s) 98, 323, 466
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 2 cut(s) 538, 813
BcnI CCSGG 4 cut(s) 153, 211, 657, 772
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 476
BglII AGATCT 1 cut(s) 18
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
Bme1390I CCNGG 6 cut(s) 153, 211, 538, 657, 772, 813
Bme18I GGWCC 2 cut(s) 155, 659
BmgT120I GGNCC 2 cut(s) 155, 659
BmiI GGNNCC 5 cut(s) 156, 157, 324, 660, 796
BmrFI CCNGG 6 cut(s) 153, 211, 538, 657, 772, 813
BmrI ACTGGG 1 cut(s) 640
BmuI ACTGGG 1 cut(s) 640
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 4 cut(s) 153, 211, 657, 772
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 2 cut(s) 198, 537
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 464, 602
Bse1I ACTGG 3 cut(s) 60, 292, 646
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 2 cut(s) 538, 813
BseDI CCNNGG 2 cut(s) 198, 537
BseGI GGATG 3 cut(s) 242, 410, 591
BseLI CCNNNNNNNGG 3 cut(s) 394, 464, 602
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 174, 596
BseNI ACTGG 3 cut(s) 60, 292, 646
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 499
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 573
BshFI GGCC 3 cut(s) 606, 770, 811
BshNI GGYRCC 1 cut(s) 322
BsiSI CCGG 5 cut(s) 152, 169, 210, 656, 771
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 394, 464, 602
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 3 cut(s) 606, 770, 811
Bso31I GGTCTC 1 cut(s) 473
Bsp143I GATC 3 cut(s) 18, 279, 850
BspACI CCGC 1 cut(s) 300
BspANI GGCC 3 cut(s) 606, 770, 811
BspCNI CTCAG 2 cut(s) 173, 595
BspLI GGNNCC 5 cut(s) 156, 157, 324, 660, 796
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 1 cut(s) 858
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 3 cut(s) 60, 292, 646
BssECI CCNNGG 2 cut(s) 198, 537
BssMI GATC 3 cut(s) 18, 279, 850
Bst2UI CCWGG 2 cut(s) 538, 813
Bst4CI ACNGT 3 cut(s) 250, 361, 684
Bst6I CTCTTC 2 cut(s) 115, 483
BstAPI GCANNNNNTGC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 3 cut(s) 160, 582, 625
BstEII GGTNACC 1 cut(s) 488
BstENI CCTNNNNNAGG 1 cut(s) 600
BstF5I GGATG 3 cut(s) 242, 410, 591
BstKTI GATC 3 cut(s) 21, 282, 853
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 3 cut(s) 18, 279, 850
BstMWI GCNNNNNNNGC 3 cut(s) 297, 363, 521
BstNI CCWGG 2 cut(s) 538, 813
BstNSI RCATGY 2 cut(s) 196, 552
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 6 cut(s) 151, 209, 536, 655, 770, 811
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 499
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 3 cut(s) 606, 770, 811
BtsCI GGATG 3 cut(s) 242, 410, 591
BtsIMutI CAGTG 2 cut(s) 246, 299
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 155, 659
Csp6I GTAC 2 cut(s) 323, 751
CviAII CATG 5 cut(s) 193, 317, 419, 427, 549
CviQI GTAC 2 cut(s) 323, 751
DdeI CTNAG 3 cut(s) 160, 582, 625
DpnI GATC 3 cut(s) 20, 281, 852
DpnII GATC 3 cut(s) 18, 279, 850
DraI TTTAAA 1 cut(s) 744
Eam1104I CTCTTC 2 cut(s) 115, 483
EarI CTCTTC 2 cut(s) 115, 483
Eco147I AGGCCT 1 cut(s) 811
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 155, 659
Eco57I CTGAAG 2 cut(s) 656, 777
Eco91I GGTNACC 1 cut(s) 488
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 2 cut(s) 155, 659
EcoO65I GGTNACC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 536, 811
FaeI CATG 5 cut(s) 196, 320, 422, 430, 552
FaqI GGGAC 1 cut(s) 168
FatI CATG 5 cut(s) 192, 316, 418, 426, 548
FauNDI CATATG 2 cut(s) 463, 858
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 3 cut(s) 229, 417, 578
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 1 cut(s) 494
GluI GCNGC 1 cut(s) 513
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 3 cut(s) 606, 770, 811
HapII CCGG 5 cut(s) 152, 169, 210, 656, 771
Hin1II CATG 5 cut(s) 196, 320, 422, 430, 552
HinfI GANTC 6 cut(s) 72, 172, 475, 506, 665, 710
HpaII CCGG 5 cut(s) 152, 169, 210, 656, 771
HphI GGTGA 2 cut(s) 564, 645
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 182, 673, 829
Hpy188III TCNNGA 4 cut(s) 129, 472, 662, 867
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 5 cut(s) 88, 240, 512, 760, 834
HpyCH4III ACNGT 3 cut(s) 250, 361, 684
HpyCH4V TGCA 7 cut(s) 308, 357, 441, 515, 554, 689, 862
HpyF10VI GCNNNNNNNGC 3 cut(s) 297, 363, 521
HpyF3I CTNAG 3 cut(s) 160, 582, 625
Hsp92II CATG 5 cut(s) 196, 320, 422, 430, 552
KflI GGGWCCC 1 cut(s) 155
KpnI GGTACC 1 cut(s) 326
Kzo9I GATC 3 cut(s) 18, 279, 850
LmnI GCTCC 3 cut(s) 182, 229, 521
Lsp1109I GCAGC 1 cut(s) 499
MaeI CTAG 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 488, 736
MalI GATC 3 cut(s) 20, 281, 852
MboI GATC 3 cut(s) 18, 279, 850
MflI RGATCY 1 cut(s) 18
MluCI AATT 5 cut(s) 283, 498, 564, 618, 746
MlyI GAGTC 3 cut(s) 66, 166, 469
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 7 cut(s) 136, 169, 208, 313, 328, 438, 606
MseI TTAA 5 cut(s) 45, 743, 780, 801, 834
MslI CAYNNNNRTG 1 cut(s) 673
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 5 cut(s) 152, 169, 210, 656, 771
MspR9I CCNGG 6 cut(s) 153, 211, 538, 657, 772, 813
Mva1269I GAATGC 1 cut(s) 680
MvaI CCWGG 2 cut(s) 538, 813
MwoI GCNNNNNNNGC 3 cut(s) 297, 363, 521
NciI CCSGG 4 cut(s) 153, 211, 657, 772
NdeI CATATG 2 cut(s) 463, 858
NdeII GATC 3 cut(s) 18, 279, 850
NlaIII CATG 5 cut(s) 196, 320, 422, 430, 552
NlaIV GGNNCC 5 cut(s) 156, 157, 324, 660, 796
NmeAIII GCCGAG 1 cut(s) 179
NspI RCATGY 2 cut(s) 196, 552
PceI AGGCCT 1 cut(s) 811
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PctI GAATGC 1 cut(s) 680
PfeI GAWTC 3 cut(s) 506, 665, 710
PflMI CCANNNNNTGG 1 cut(s) 464
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 1 cut(s) 514
PleI GAGTC 3 cut(s) 66, 166, 469
PpsI GAGTC 3 cut(s) 66, 166, 469
PpuMI RGGWCCY 2 cut(s) 155, 659
PshBI ATTAAT 2 cut(s) 801, 834
Psp5II RGGWCCY 2 cut(s) 155, 659
Psp6I CCWGG 2 cut(s) 536, 811
PspEI GGTNACC 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 2 cut(s) 536, 811
PspN4I GGNNCC 5 cut(s) 156, 157, 324, 660, 796
PspPI GGNCC 2 cut(s) 155, 659
PspPPI RGGWCCY 2 cut(s) 155, 659
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 324, 752
RsaNI GTAC 2 cut(s) 323, 751
RseI CAYNNNNRTG 1 cut(s) 673
SaqAI TTAA 5 cut(s) 45, 743, 780, 801, 834
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 3 cut(s) 18, 279, 850
Sau96I GGNCC 2 cut(s) 155, 659
SchI GAGTC 3 cut(s) 66, 166, 469
ScrFI CCNGG 6 cut(s) 153, 211, 538, 657, 772, 813
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 2 cut(s) 155, 659
SmiMI CAYNNNNRTG 1 cut(s) 673
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 5 cut(s) 283, 498, 564, 618, 746
SseBI AGGCCT 1 cut(s) 811
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 494
StuI AGGCCT 1 cut(s) 811
StyD4I CCNGG 6 cut(s) 151, 209, 536, 655, 770, 811
TaaI ACNGT 3 cut(s) 250, 361, 684
TasI AATT 5 cut(s) 283, 498, 564, 618, 746
TfiI GAWTC 3 cut(s) 506, 665, 710
Tru1I TTAA 5 cut(s) 45, 743, 780, 801, 834
Tru9I TTAA 5 cut(s) 45, 743, 780, 801, 834
TscAI CASTG 2 cut(s) 253, 299
TseI GCWGC 1 cut(s) 512
TspDTI ATGAA 2 cut(s) 21, 228
TspRI CASTG 2 cut(s) 253, 299
Van91I CCANNNNNTGG 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 155, 659
VspI ATTAAT 2 cut(s) 801, 834
XagI CCTNNNNNAGG 1 cut(s) 600
XceI RCATGY 2 cut(s) 196, 552
XcmI CCANNNNNNNNNTGG 2 cut(s) 19, 299
XmiI GTMKAC 1 cut(s) 70
XspI CTAG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.