Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Forward (+)

5587311 .. 5591520

Gene Structure 4210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1055000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCTAAAACCCAGACAGATCTTGGGTTGTTCGTTTGGCTTCGTTTCTCATCGCTGGAAGCCATATTCTAATACTTGTACCAGTATTTCTACTACAAGTGGTACCCTCTCCTTCCTCTCTAATTCCACCTGCTCCAACCCTTTATTATCTTTTTCTTCTTCCTCCTCAACATTATTGCCCGCAACCACCGCCACTTGGCCGTCCTCCACTCGTCGCCCTCGTTTCGGAGCTCTCAGCTTGTCCTCAGCTCCTTCTGGGTCGAACGGAGGTGGCTCTTCTTCTTCAGTTGCGGTTCAGTCTGCTGGCAATGCTCGTAAGATTAATTTCTGCCAGTCGTGTGGTGGTCCAACAAAGCATGAGATACCCGACGGTGAGGAGAAGATACGAGCTATTTGCACAGTTTGTGAGAGGATTGCGTATGAGAACCCAAAAATGGTTGTGGGTTGTCTGATTGAGCATGATAACAGGATCCTACTTTGCAAAAGGAAGATTCAACCATCATATGGCCTTTGGACTCTTCCTGCAGGTTACATGGAAATTGGGGAATCAGCTGCAGAAGGAGCCATCAGGGAAACCAGGGAAGAAGCATGTGCAGATGTGGAAGTGCTGTCTCCTTTTGCTCAATTGGACATCCCACTGATTGGCCAGACGTATGTAATTTTCTTAGGAAGGCTCAAGACACCCCATTTTTCACCAGGTCCTGAATCGTCAGAATGCGGGCTTTTTGCACTTGATGAGATACCTTTTGATTCTCTCTCCTTTTCGTCAATGGTTGTTACCTTAAAATTGTATGTTGAAGATGTAAGGGCTGGAAAGATAAAGTTCCACTATGGCCCGGCACAAGTCCTTCTGACAGTCATGCCTATACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

291

Amino Acids

31.26

Weight (kDa)

7.98

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Nudix	PF14803	108 - 141	4.2e-13	Nudix N-terminal
NUDIX	PF00293	145 - 247	5.5e-13	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	2 cut(s)	137, 515
Acc65I	GGTACC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	2 cut(s)	503, 641
AciI	CCGC	4 cut(s)	180, 189, 290, 717
AclWI	GGATC	2 cut(s)	463, 476
AcoI	YGGCCR	2 cut(s)	197, 643
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	79, 103
AfiI	CCNNNNNNNGG	5 cut(s)	195, 224, 433, 503, 641
AgsI	TTSAA	2 cut(s)	494, 797
AjnI	CCWGG	2 cut(s)	575, 694
AluBI	AGCT	5 cut(s)	230, 237, 248, 389, 551
AluI	AGCT	5 cut(s)	230, 237, 248, 389, 551
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	2 cut(s)	463, 476
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	4 cut(s)	197, 505, 643, 832
ApeKI	GCWGC	1 cut(s)	551
AseI	ATTAAT	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	101
AspS9I	GGNCC	3 cut(s)	344, 698, 833
AsuC2I	CCSGG	1 cut(s)	836
AsuHPI	GGTGA	2 cut(s)	383, 684
AvaII	GGWCC	2 cut(s)	344, 698
BalI	TGGCCA	1 cut(s)	645
BamHI	GGATCC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	2 cut(s)	505, 572
BceAI	ACGGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	2 cut(s)	577, 696
BcnI	CCSGG	1 cut(s)	836
BcoDI	GTCTC	1 cut(s)	615
BfmI	CTRYAG	2 cut(s)	522, 552
BfuAI	ACCTGC	2 cut(s)	137, 515
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	577, 696, 836
Bme18I	GGWCC	2 cut(s)	344, 698
BmgT120I	GGNCC	3 cut(s)	344, 698, 833
BmiI	GGNNCC	3 cut(s)	103, 470, 562
BmrFI	CCNGG	3 cut(s)	577, 696, 836
Bpu10I	CCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	836
BsaJI	CCNNGG	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 224, 433, 503, 641
Bse1I	ACTGG	2 cut(s)	81, 331
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	577, 696
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	630
BseLI	CCNNNNNNNGG	5 cut(s)	195, 224, 433, 503, 641
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	247, 258
BseNI	ACTGG	2 cut(s)	81, 331
BseRI	GAGGAG	2 cut(s)	154, 389
BseXI	GCAGC	1 cut(s)	538
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	4 cut(s)	199, 507, 645, 834
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	836
BslI	CCNNNNNNNGG	5 cut(s)	195, 224, 433, 503, 641
BsmAI	GTCTC	1 cut(s)	615
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	4 cut(s)	199, 507, 645, 834
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	18, 468
BspACI	CCGC	4 cut(s)	180, 189, 290, 717
BspANI	GGCC	4 cut(s)	199, 507, 645, 834
BspCNI	CTCAG	2 cut(s)	246, 257
BspLI	GGNNCC	3 cut(s)	103, 470, 562
BspMAI	CTGCAG	2 cut(s)	526, 556
BspMI	ACCTGC	2 cut(s)	137, 515
BspPI	GGATC	2 cut(s)	463, 476
BspQI	GCTCTTC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	81, 331
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	2 cut(s)	18, 468
Bst2UI	CCWGG	2 cut(s)	577, 696
Bst4CI	ACNGT	3 cut(s)	371, 400, 856
Bst6I	CTCTTC	2 cut(s)	280, 522
BstC8I	GCNNGC	3 cut(s)	180, 304, 719
BstDEI	CTNAG	3 cut(s)	233, 244, 664
BstF5I	GGATG	1 cut(s)	630
BstKTI	GATC	2 cut(s)	21, 471
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	2 cut(s)	18, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 308, 560
BstNI	CCWGG	2 cut(s)	577, 696
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	3 cut(s)	575, 694, 834
BstSFI	CTRYAG	2 cut(s)	522, 552
BstV1I	GCAGC	1 cut(s)	538
BstX2I	RGATCY	2 cut(s)	18, 468
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	2 cut(s)	18, 468
BsuRI	GGCC	4 cut(s)	199, 507, 645, 834
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	635
BveI	ACCTGC	2 cut(s)	137, 515
Cac8I	GCNNGC	3 cut(s)	180, 304, 719
CaiI	CAGNNNCTG	1 cut(s)	701
Cfr13I	GGNCC	3 cut(s)	344, 698, 833
CsiI	ACCWGGT	1 cut(s)	694
Csp6I	GTAC	2 cut(s)	78, 102
CviAII	CATG	5 cut(s)	356, 458, 532, 588, 859
CviQI	GTAC	2 cut(s)	78, 102
DdeI	CTNAG	3 cut(s)	233, 244, 664
DpnI	GATC	2 cut(s)	20, 470
DpnII	GATC	2 cut(s)	18, 468
EaeI	YGGCCR	2 cut(s)	197, 643
Eam1104I	CTCTTC	2 cut(s)	280, 522
EarI	CTCTTC	2 cut(s)	280, 522
Ecl136II	GAGCTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	344, 698
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRII	CCWGG	2 cut(s)	575, 694
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	5 cut(s)	359, 461, 535, 591, 862
FatI	CATG	5 cut(s)	355, 457, 531, 587, 858
FauI	CCCGC	2 cut(s)	187, 710
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	552
HaeIII	GGCC	4 cut(s)	199, 507, 645, 834
HapII	CCGG	1 cut(s)	836
Hin1II	CATG	5 cut(s)	359, 461, 535, 591, 862
HinfI	GANTC	5 cut(s)	490, 514, 545, 704, 749
HpaII	CCGG	1 cut(s)	836
HphI	GGTGA	2 cut(s)	383, 684
Hpy188I	TCNGA	4 cut(s)	227, 450, 712, 852
Hpy188III	TCNNGA	2 cut(s)	676, 701
Hpy99I	CGWCG	2 cut(s)	216, 371
HpyAV	CCTTC	5 cut(s)	121, 261, 551, 663, 857
HpyCH4III	ACNGT	3 cut(s)	371, 400, 856
HpyCH4IV	ACGT	1 cut(s)	650
HpyCH4V	TGCA	6 cut(s)	396, 480, 524, 554, 593, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 308, 560
HpyF3I	CTNAG	3 cut(s)	233, 244, 664
HpySE526I	ACGT	1 cut(s)	650
Hsp92II	CATG	5 cut(s)	359, 461, 535, 591, 862
KpnI	GGTACC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	18, 468
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	4 cut(s)	137, 227, 253, 560
Lsp1109I	GCAGC	1 cut(s)	538
MabI	ACCWGGT	1 cut(s)	694
MaeII	ACGT	1 cut(s)	650
MaeIII	GTNAC	2 cut(s)	527, 775
MalI	GATC	2 cut(s)	20, 470
MboI	GATC	2 cut(s)	18, 468
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	2 cut(s)	18, 468
MhlI	GDGCHC	1 cut(s)	232
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	6 cut(s)	121, 322, 537, 623, 657, 785
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	2 cut(s)	159, 371
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	2 cut(s)	321, 782
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	1 cut(s)	836
MspR9I	CCNGG	3 cut(s)	577, 696, 836
MunI	CAATTG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	2 cut(s)	577, 696
MwoI	GCNNNNNNNGC	3 cut(s)	188, 308, 560
NciI	CCSGG	1 cut(s)	836
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	2 cut(s)	18, 468
NlaIII	CATG	5 cut(s)	359, 461, 535, 591, 862
NlaIV	GGNNCC	3 cut(s)	103, 470, 562
NspI	RCATGY	1 cut(s)	591
PaqCI	CACCTGC	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PctI	GAATGC	1 cut(s)	719
PfeI	GAWTC	4 cut(s)	490, 545, 704, 749
PflMI	CCANNNNNTGG	2 cut(s)	503, 641
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	698
PshBI	ATTAAT	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	232
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	575, 694
PspGI	CCWGG	2 cut(s)	575, 694
PspN4I	GGNNCC	3 cut(s)	103, 470, 562
PspPI	GGNCC	3 cut(s)	344, 698, 833
PspPPI	RGGWCCY	1 cut(s)	698
PstI	CTGCAG	2 cut(s)	526, 556
PstNI	CAGNNNCTG	1 cut(s)	701
PsuI	RGATCY	2 cut(s)	18, 468
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	79, 103
RsaNI	GTAC	2 cut(s)	78, 102
SacI	GAGCTC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	321, 782
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	2 cut(s)	18, 468
Sau96I	GGNCC	3 cut(s)	344, 698, 833
SbfI	CCTGCAGG	1 cut(s)	526
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	3 cut(s)	577, 696, 836
SdaI	CCTGCAGG	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	232
SexAI	ACCWGGT	1 cut(s)	694
SfcI	CTRYAG	2 cut(s)	522, 552
SinI	GGWCC	2 cut(s)	344, 698
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse8387I	CCTGCAGG	1 cut(s)	526
Sse9I	AATT	6 cut(s)	121, 322, 537, 623, 657, 785
SsiI	CCGC	4 cut(s)	180, 189, 290, 717
SstI	GAGCTC	1 cut(s)	232
StyD4I	CCNGG	3 cut(s)	575, 694, 834
TaaI	ACNGT	3 cut(s)	371, 400, 856
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	1 cut(s)	260
TasI	AATT	6 cut(s)	121, 322, 537, 623, 657, 785
TfiI	GAWTC	4 cut(s)	490, 545, 704, 749
Tru1I	TTAA	2 cut(s)	321, 782
Tru9I	TTAA	2 cut(s)	321, 782
TscAI	CASTG	1 cut(s)	642
TseI	GCWGC	1 cut(s)	551
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	642
Van91I	CCANNNNNTGG	2 cut(s)	503, 641
VpaK11BI	GGWCC	2 cut(s)	344, 698
VspI	ATTAAT	1 cut(s)	321
XceI	RCATGY	1 cut(s)	591
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.