Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Forward (+)

11382658 .. 11386640

Gene Structure 3983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCTAAAAACCAGACAGATCTTGGGTTGTTCATCAGGCTTGGTTTCGCATCGTTGGAAGCCCTATAGCTCTACAGGCAGCAGGCAGGTGTCCTTCATTTCTATCTCCACCTGCTCCAAACCATTATTATTATCATCATCTTCTTCTTCTTCTTCGACAATTATACCGACAACAACCACTTTGTTACTTCCTGGGTCCTCACCTCGCCGCACTCGTTTTGGAGCTTTCAGCATGTCCTCAGCTCATTCTGGGCCAAACCCAGGTGGCCCTTCTTCTTCAGTCGCGGTTCACTCAGCTGGCAATGCTCGTAAGATCAATTTCTGCCAGTGGTGTGGTGGCCCAACAAAGCATGAGATACCTGATGGAGAGGAGAAGATAAGAGCTATTTGCACGGTTTGTGATAAGATTGCCTACGAGAACCCAAAAATGGTTGTGGGCTGTCTGATTGAGCATGATAACATGGTCCTGCTTTGCAAGAGGAAGATTCAGCCATCATATGGCCTTTGGACTCTTCCCGCAGGTTATATGGAAATTGGGGAATCAGCTACAGAAGGAGCAATCAGAGAAACCTGGGAAGAAGCATGTGCAGAAGTGGAAGTGCTGTCTTCTTTTGCTCAGTTGGACATCCCACTAATTGGCCAGACTTATGTAATTTTCTTAGCAAGGCTGAAGAAGCCCCACTTCTCACCGGGTCCAGAATCATCAGAATGCCGACTATTTGCACTTGATGATATACCTTTTGATTCTCTGGCTTTTTCGTCGATGGTAGTGACCTTAAAATTGTATGCAGAAGATGTAAGGGCCGGAAAACTTAAGTTCCACTATGGTATCATCAATAAAAAGCCTGGCACAAGTCCTTCTGACATTCATGCCTATACTTTGGATTATCATCTGCAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

301

Amino Acids

32.67

Weight (kDa)

8.48

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	76, 119
Acc36I	ACCTGC	3 cut(s)	76, 119, 509
AccB7I	CCANNNNNTGG	2 cut(s)	497, 635
AccII	CGCG	1 cut(s)	284
AciI	CCGC	3 cut(s)	208, 284, 516
AcoI	YGGCCR	1 cut(s)	637
AcuI	CTGAAG	2 cut(s)	261, 689
AfiI	CCNNNNNNNGG	4 cut(s)	260, 427, 497, 635
AflII	CTTAAG	1 cut(s)	812
AjnI	CCWGG	4 cut(s)	190, 259, 569, 844
AluBI	AGCT	6 cut(s)	69, 224, 242, 296, 383, 545
AluI	AGCT	6 cut(s)	69, 224, 242, 296, 383, 545
AoxI	GGCC	6 cut(s)	251, 265, 337, 499, 637, 801
ApeKI	GCWGC	1 cut(s)	78
AspS9I	GGNCC	7 cut(s)	195, 251, 266, 338, 463, 692, 801
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	2 cut(s)	192, 678
AvaII	GGWCC	3 cut(s)	195, 463, 692
BaeI	ACNNNNGTAYC	2 cut(s)	811, 844
BalI	TGGCCA	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	3 cut(s)	356, 499, 757
BciT130I	CCWGG	4 cut(s)	192, 261, 571, 846
BcnI	CCSGG	1 cut(s)	690
BfmI	CTRYAG	4 cut(s)	64, 72, 546, 893
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	3 cut(s)	76, 119, 509
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	2 cut(s)	79, 208
BlsI	GCNGC	2 cut(s)	80, 209
Bme1390I	CCNGG	5 cut(s)	192, 261, 571, 690, 846
Bme18I	GGWCC	3 cut(s)	195, 463, 692
BmgT120I	GGNCC	7 cut(s)	195, 251, 266, 338, 463, 692, 801
BmiI	GGNNCC	2 cut(s)	196, 693
BmrFI	CCNGG	5 cut(s)	192, 261, 571, 690, 846
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	690
BsaBI	GATNNNNATC	1 cut(s)	888
BsaJI	CCNNGG	3 cut(s)	191, 259, 570
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 427, 497, 635
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	4 cut(s)	192, 261, 571, 846
BseDI	CCNNGG	3 cut(s)	191, 259, 570
BseGI	GGATG	1 cut(s)	624
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	4 cut(s)	260, 427, 497, 635
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	252, 306, 629
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	606
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	6 cut(s)	253, 267, 339, 501, 639, 803
BsiSI	CCGG	2 cut(s)	689, 804
BslI	CCNNNNNNNGG	4 cut(s)	260, 427, 497, 635
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	6 cut(s)	253, 267, 339, 501, 639, 803
Bsp143I	GATC	2 cut(s)	18, 312
BspACI	CCGC	3 cut(s)	208, 284, 516
BspANI	GGCC	6 cut(s)	253, 267, 339, 501, 639, 803
BspCNI	CTCAG	3 cut(s)	251, 305, 628
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	2 cut(s)	196, 693
BspMAI	CTGCAG	1 cut(s)	897
BspMI	ACCTGC	3 cut(s)	76, 119, 509
BspTI	CTTAAG	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	191, 259, 570
BssMI	GATC	2 cut(s)	18, 312
Bst2UI	CCWGG	4 cut(s)	192, 261, 571, 846
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	516
BstAFI	CTTAAG	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	83, 298
BstDEI	CTNAG	4 cut(s)	238, 292, 615, 658
BstF5I	GGATG	1 cut(s)	624
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	2 cut(s)	21, 315
BstMBI	GATC	2 cut(s)	18, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 302, 673
BstNI	CCWGG	4 cut(s)	192, 261, 571, 846
BstNSI	RCATGY	2 cut(s)	235, 585
BstSCI	CCNGG	5 cut(s)	190, 259, 569, 688, 844
BstSFI	CTRYAG	4 cut(s)	64, 72, 546, 893
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	6 cut(s)	253, 267, 339, 501, 639, 803
BtsCI	GGATG	1 cut(s)	624
BtsIMutI	CAGTG	1 cut(s)	332
BveI	ACCTGC	3 cut(s)	76, 119, 509
Cac8I	GCNNGC	2 cut(s)	83, 298
Cfr13I	GGNCC	7 cut(s)	195, 251, 266, 338, 463, 692, 801
CviAII	CATG	6 cut(s)	232, 350, 452, 460, 582, 869
DdeI	CTNAG	4 cut(s)	238, 292, 615, 658
DpnI	GATC	2 cut(s)	20, 314
DpnII	GATC	2 cut(s)	18, 312
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco47I	GGWCC	3 cut(s)	195, 463, 692
Eco57I	CTGAAG	2 cut(s)	261, 689
EcoO109I	RGGNCCY	1 cut(s)	195
EcoRII	CCWGG	4 cut(s)	190, 259, 569, 844
FaeI	CATG	6 cut(s)	235, 353, 455, 463, 585, 872
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FatI	CATG	6 cut(s)	231, 349, 451, 459, 581, 868
FauI	CCCGC	1 cut(s)	523
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	79, 208
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	2 cut(s)	79, 208
GluI	GCNGC	2 cut(s)	79, 208
HaeIII	GGCC	6 cut(s)	253, 267, 339, 501, 639, 803
HapII	CCGG	2 cut(s)	689, 804
Hin1II	CATG	6 cut(s)	235, 353, 455, 463, 585, 872
HinfI	GANTC	5 cut(s)	484, 508, 539, 698, 743
HpaII	CCGG	2 cut(s)	689, 804
HphI	GGTGA	2 cut(s)	192, 678
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	4 cut(s)	444, 563, 706, 862
Hpy188III	TCNNGA	2 cut(s)	695, 900
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	763
HpyAV	CCTTC	4 cut(s)	103, 279, 545, 867
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	6 cut(s)	390, 474, 587, 722, 788, 895
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 302, 673
HpyF3I	CTNAG	4 cut(s)	238, 292, 615, 658
Hsp92II	CATG	6 cut(s)	235, 353, 455, 463, 585, 872
Kzo9I	GATC	2 cut(s)	18, 312
LmnI	GCTCC	3 cut(s)	119, 221, 554
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	183, 769
MalI	GATC	2 cut(s)	20, 314
MboI	GATC	2 cut(s)	18, 312
MflI	RGATCY	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	6 cut(s)	159, 316, 531, 633, 651, 779
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	2 cut(s)	35, 600
MnlI	CCTC	5 cut(s)	208, 213, 247, 361, 471
Mox20I	TGGCCA	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	2 cut(s)	776, 813
MslI	CAYNNNNRTG	1 cut(s)	706
Msp20I	TGGCCA	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	2 cut(s)	689, 804
MspR9I	CCNGG	5 cut(s)	192, 261, 571, 690, 846
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	4 cut(s)	192, 261, 571, 846
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	75, 302, 673
NciI	CCSGG	1 cut(s)	690
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	18, 312
NlaIII	CATG	6 cut(s)	235, 353, 455, 463, 585, 872
NlaIV	GGNNCC	2 cut(s)	196, 693
NmuCI	GTSAC	1 cut(s)	769
NspI	RCATGY	2 cut(s)	235, 585
PaqCI	CACCTGC	2 cut(s)	76, 119
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	4 cut(s)	484, 539, 698, 743
PflMI	CCANNNNNTGG	2 cut(s)	497, 635
PkrI	GCNGC	2 cut(s)	80, 209
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	195
Psp6I	CCWGG	4 cut(s)	190, 259, 569, 844
PspGI	CCWGG	4 cut(s)	190, 259, 569, 844
PspN4I	GGNNCC	2 cut(s)	196, 693
PspPI	GGNCC	7 cut(s)	195, 251, 266, 338, 463, 692, 801
PspPPI	RGGWCCY	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	706
SaqAI	TTAA	2 cut(s)	776, 813
SatI	GCNGC	2 cut(s)	79, 208
Sau3AI	GATC	2 cut(s)	18, 312
Sau96I	GGNCC	7 cut(s)	195, 251, 266, 338, 463, 692, 801
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	5 cut(s)	192, 261, 571, 690, 846
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	4 cut(s)	64, 72, 546, 893
SinI	GGWCC	3 cut(s)	195, 463, 692
SmiMI	CAYNNNNRTG	1 cut(s)	706
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	6 cut(s)	159, 316, 531, 633, 651, 779
SsiI	CCGC	3 cut(s)	208, 284, 516
StyD4I	CCNGG	5 cut(s)	190, 259, 569, 688, 844
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	155, 761
TasI	AATT	6 cut(s)	159, 316, 531, 633, 651, 779
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	4 cut(s)	484, 539, 698, 743
Tru1I	TTAA	2 cut(s)	776, 813
Tru9I	TTAA	2 cut(s)	776, 813
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	3 cut(s)	21, 85, 857
TspRI	CASTG	1 cut(s)	332
Van91I	CCANNNNNTGG	2 cut(s)	497, 635
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	3 cut(s)	195, 463, 692
XceI	RCATGY	2 cut(s)	235, 585
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.