Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Forward (+)

25236810 .. 25239456

Gene Structure 2647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCCTCGGCTCATTCCGGGTCAAACCCAGCTGCCCCTTCTTCTTCTTCATCAACTGTGGTTCAGTCAGTTGGCAATGCTCGTAAGATCAATTTCTGCCAGTGGTGCGGTGGTGCAACAAAGCATGAGGTACCTGATGGAGAGGAGAAAATAAGAGCTATTTGCACCGTTTGTGACAGGATTGCCTATGAGAACCCAAAAATGGTTGTGGGATGTTTGATTGAGCATGATAACATGGTTCTACTTTGCAAGAGGAACATTCAACCATCATATGGTCTCTGGACTCTTCCAGCAGGTTACCTAGAAATTGGGGAATCAGCTGCAGAAGGAGCAATAAGGGAAACCTGGGAAGAAGCATGTGCAGAAGTTGAAATTGTATCACCTTTTGCTCAGTTGGACATCCCTCTAATAGGCCAGACTTACATAATTTTCTTAGCAAGGCTGAAGAAAGCCCAGTTTTCACCAGGTCCAGAATCATCAGAATGCCGACTGTTTGCACTTGATGATATACCTTTTGATTCTCTGTCATTCTCGTCAATGGTAGTTACTTTAAAATTGTATGCTGAAGATGTGAAGGCCGGGAAAGTTAAGTTCCACTATGGAACCATTAATAAAAGGCCTGGCACAAGTCCTTCTGACATTAATGCCTATACTTTGGATCATCATATGCAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

226

Amino Acids

24.58

Weight (kDa)

5.52

Isoelectric Point (pI)

55.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Nudix	PF14803	31 - 64	1.4e-12	Nudix N-terminal
NUDIX	PF00293	68 - 170	2.2e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	284
Acc65I	GGTACC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	272
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	666
AcuI	CTGAAG	2 cut(s)	464, 585
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	3 cut(s)	202, 272, 410
AgsI	TTSAA	2 cut(s)	263, 371
AjnI	CCWGG	3 cut(s)	344, 463, 619
AluBI	AGCT	3 cut(s)	32, 158, 320
AluI	AGCT	3 cut(s)	32, 158, 320
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	666
AoxI	GGCC	3 cut(s)	412, 576, 617
ApeKI	GCWGC	2 cut(s)	32, 320
AseI	ATTAAT	2 cut(s)	609, 642
Asp718I	GGTACC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	2 cut(s)	19, 580
AsuHPI	GGTGA	2 cut(s)	372, 453
AvaII	GGWCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	19, 307
BccI	CCATC	2 cut(s)	131, 274
BciT130I	CCWGG	3 cut(s)	346, 465, 621
BcnI	CCSGG	2 cut(s)	19, 580
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	33, 321
BlsI	GCNGC	2 cut(s)	34, 322
Bme1390I	CCNGG	5 cut(s)	19, 346, 465, 580, 621
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	132, 604
BmrFI	CCNGG	5 cut(s)	19, 346, 465, 580, 621
BmrI	ACTGGG	1 cut(s)	448
BmuI	ACTGGG	1 cut(s)	448
BpuMI	CCSGG	2 cut(s)	19, 580
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	6, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 272, 410
Bse1I	ACTGG	2 cut(s)	100, 454
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	3 cut(s)	346, 465, 621
BseDI	CCNNGG	2 cut(s)	6, 345
BseGI	GGATG	2 cut(s)	218, 399
BseLI	CCNNNNNNNGG	3 cut(s)	202, 272, 410
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	100, 454
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	19, 307
BseYI	CCCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	414, 578, 619
BshNI	GGYRCC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	18, 579
BslI	CCNNNNNNNGG	3 cut(s)	202, 272, 410
BsmAI	GTCTC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	3 cut(s)	414, 578, 619
Bso31I	GGTCTC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	87, 658
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	3 cut(s)	414, 578, 619
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	132, 604
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	100, 454
BssECI	CCNNGG	2 cut(s)	6, 345
BssMI	GATC	2 cut(s)	87, 658
Bst2UI	CCWGG	3 cut(s)	346, 465, 621
Bst4CI	ACNGT	3 cut(s)	58, 169, 492
Bst6I	CTCTTC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	390, 433
BstEII	GGTNACC	1 cut(s)	296
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	218, 399
BstKTI	GATC	2 cut(s)	90, 661
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	87, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 329
BstNI	CCWGG	3 cut(s)	346, 465, 621
BstNSI	RCATGY	1 cut(s)	360
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	5 cut(s)	17, 344, 463, 578, 619
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	19, 307
BsuRI	GGCC	3 cut(s)	414, 578, 619
BtsCI	GGATG	2 cut(s)	218, 399
BtsIMutI	CAGTG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	467
CsiI	ACCWGGT	1 cut(s)	463
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	4 cut(s)	125, 227, 235, 357
CviJI	RGCY	9 cut(s)	11, 32, 158, 320, 414, 442, 452, 578, 619
CviKI_1	RGCY	9 cut(s)	11, 32, 158, 320, 414, 442, 452, 578, 619
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	2 cut(s)	390, 433
DpnI	GATC	2 cut(s)	89, 660
DpnII	GATC	2 cut(s)	87, 658
DraI	TTTAAA	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	619
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	2 cut(s)	464, 585
Eco91I	GGTNACC	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoO65I	GGTNACC	1 cut(s)	296
EcoRII	CCWGG	3 cut(s)	344, 463, 619
FaeI	CATG	4 cut(s)	128, 230, 238, 360
FatI	CATG	4 cut(s)	124, 226, 234, 356
FauNDI	CATATG	2 cut(s)	271, 666
Fnu4HI	GCNGC	2 cut(s)	33, 321
FokI	GGATG	2 cut(s)	225, 386
Fsp4HI	GCNGC	2 cut(s)	33, 321
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	2 cut(s)	33, 321
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	414, 578, 619
HapII	CCGG	2 cut(s)	18, 579
Hin1II	CATG	4 cut(s)	128, 230, 238, 360
HinfI	GANTC	4 cut(s)	283, 314, 473, 518
HpaII	CCGG	2 cut(s)	18, 579
HphI	GGTGA	2 cut(s)	372, 453
Hpy188I	TCNGA	2 cut(s)	481, 637
Hpy188III	TCNNGA	3 cut(s)	280, 470, 675
HpyAV	CCTTC	4 cut(s)	48, 320, 568, 642
HpyCH4III	ACNGT	3 cut(s)	58, 169, 492
HpyCH4V	TGCA	7 cut(s)	116, 165, 249, 323, 362, 497, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 329
HpyF3I	CTNAG	2 cut(s)	390, 433
Hsp92II	CATG	4 cut(s)	128, 230, 238, 360
KpnI	GGTACC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	87, 658
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	2 cut(s)	19, 307
MabI	ACCWGGT	1 cut(s)	463
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	173, 296, 544
MalI	GATC	2 cut(s)	89, 660
MboI	GATC	2 cut(s)	87, 658
MboII	GAAGA	7 cut(s)	33, 36, 39, 278, 362, 457, 578
MluCI	AATT	5 cut(s)	91, 306, 372, 426, 554
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	5 cut(s)	16, 121, 136, 246, 414
MseI	TTAA	4 cut(s)	551, 588, 609, 642
MslI	CAYNNNNRTG	1 cut(s)	481
MspA1I	CMGCKG	2 cut(s)	32, 320
MspI	CCGG	2 cut(s)	18, 579
MspR9I	CCNGG	5 cut(s)	19, 346, 465, 580, 621
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	3 cut(s)	346, 465, 621
MwoI	GCNNNNNNNGC	2 cut(s)	105, 329
NciI	CCSGG	2 cut(s)	19, 580
NdeI	CATATG	2 cut(s)	271, 666
NdeII	GATC	2 cut(s)	87, 658
NlaIII	CATG	4 cut(s)	128, 230, 238, 360
NlaIV	GGNNCC	2 cut(s)	132, 604
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	619
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	314, 473, 518
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	34, 322
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PshBI	ATTAAT	2 cut(s)	609, 642
Psp6I	CCWGG	3 cut(s)	344, 463, 619
PspEI	GGTNACC	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	3 cut(s)	344, 463, 619
PspN4I	GGNNCC	2 cut(s)	132, 604
PspPI	GGNCC	1 cut(s)	467
PstI	CTGCAG	1 cut(s)	325
PvuII	CAGCTG	2 cut(s)	32, 320
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	4 cut(s)	551, 588, 609, 642
SatI	GCNGC	2 cut(s)	33, 321
Sau3AI	GATC	2 cut(s)	87, 658
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	5 cut(s)	19, 346, 465, 580, 621
SexAI	ACCWGGT	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	481
Sse9I	AATT	5 cut(s)	91, 306, 372, 426, 554
SseBI	AGGCCT	1 cut(s)	619
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	302
StuI	AGGCCT	1 cut(s)	619
StyD4I	CCNGG	5 cut(s)	17, 344, 463, 578, 619
TaaI	ACNGT	3 cut(s)	58, 169, 492
TasI	AATT	5 cut(s)	91, 306, 372, 426, 554
TfiI	GAWTC	3 cut(s)	314, 473, 518
Tru1I	TTAA	4 cut(s)	551, 588, 609, 642
Tru9I	TTAA	4 cut(s)	551, 588, 609, 642
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	32, 320
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	107
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	467
VspI	ATTAAT	2 cut(s)	609, 642
XagI	CCTNNNNNAGG	1 cut(s)	408
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.