Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Reverse (-)

15856314 .. 15859858

Gene Structure 3545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTCAAAACCATACAGATCTTGGGCTGTTCATCTGGGTTGGTTAAGCCCCAAACTACTAGAACCACTTGTTGTAGGCTCTCCTTCATTTCTTCCCTCTCCACCAAACCATTTTCGTATTCTTTTTCTTCTTTGAGAGCAACCCATTTGTTATTTCCGGAACACTCAGCTCGCCGGACCCGTTTCCGAGCTTTCAGTATGTCCTCGGCTCATTCCGGGTCAACCCCATCTGCCCCTTCTTCTTCTTCACCAACTGTGGTTCAGTCAGTTGGGAATGCTCGTAAGATAAATTTCTGCCAGTGGTGCGGTGGTGCAACAAAGCATGAGATACCTGATGGAGAGGAGAAAGTCAGAGCTATTTGCACAGTTTGTGATAGGATTGCCTATGAGAACCCAAAAATGGTCGTGGGATGTCTGATTGAGCATGATAACATGGTTCTACTTTGCAAGAGGAACATTCAACCGTCGTATGGCCTCTGGACTCTTCCAGCAGGTTACCTAGAAATTGGGGAATCAGCTGCCGAAGGAGCAATCAGGGAGACCTGGGAAGAAGCATGTGCAGAAGTTGAAGTTGTATCCCCTTTTGCTCAATTGGACATACCTCTTATCGGCCAGACCTACGTAATTTTCTTAGCAAGGCTGAAAAAACCCCAGTTTTCACCAGGTCCAGAATCATCAGAATGCCGACTGTTTGCACTTGATGATATACCATTTGATTCTCTGTCATTCTCATCAATGGTAGTTACTTTAAAATTGTACATTGAAGATGTGAAGGCAGGGAAGCTTAAGTTCCACTATGGAACCATTAATAAAAGGTATTTTCAGTTAATTGGTTTTCCAGGTATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

284

Amino Acids

31.27

Weight (kDa)

8.6

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Nudix	PF14803	97 - 130	7.1e-13	Nudix N-terminal
NUDIX	PF00293	134 - 236	4.1e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	482
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	1 cut(s)	758
AfiI	CCNNNNNNNGG	3 cut(s)	400, 470, 608
AflII	CTTAAG	1 cut(s)	785
AgsI	TTSAA	3 cut(s)	461, 569, 764
AjnI	CCWGG	3 cut(s)	542, 661, 838
AluBI	AGCT	5 cut(s)	170, 191, 356, 518, 784
AluI	AGCT	5 cut(s)	170, 191, 356, 518, 784
Alw26I	GTCTC	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	2 cut(s)	472, 610
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	289
AseI	ATTAAT	1 cut(s)	807
AspS9I	GGNCC	2 cut(s)	177, 665
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	240, 651
AvaII	GGWCC	2 cut(s)	177, 665
BbvI	GCAGC	1 cut(s)	505
BccI	CCATC	2 cut(s)	235, 329
BciT130I	CCWGG	3 cut(s)	544, 663, 840
BciVI	GTATCC	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	2 cut(s)	60, 500
BfrI	CTTAAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	482
BfuI	GTATCC	1 cut(s)	586
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	4 cut(s)	217, 544, 663, 840
Bme18I	GGWCC	2 cut(s)	177, 665
BmgT120I	GGNCC	2 cut(s)	177, 665
BmiI	GGNNCC	2 cut(s)	179, 802
BmrFI	CCNGG	4 cut(s)	217, 544, 663, 840
BmrI	ACTGGG	1 cut(s)	646
BmuI	ACTGGG	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	217
BsaAI	YACGTR	1 cut(s)	622
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	204, 543
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 470, 608
Bse1I	ACTGG	2 cut(s)	298, 652
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	3 cut(s)	544, 663, 840
BseDI	CCNNGG	2 cut(s)	204, 543
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	3 cut(s)	400, 470, 608
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	298, 652
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	505
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	2 cut(s)	474, 612
BsiSI	CCGG	3 cut(s)	158, 175, 216
BslI	CCNNNNNNNGG	3 cut(s)	400, 470, 608
BsmAI	GTCTC	1 cut(s)	533
BsmI	GAATGC	2 cut(s)	280, 686
BsnI	GGCC	2 cut(s)	474, 612
Bso31I	GGTCTC	1 cut(s)	533
Bsp13I	TCCGGA	1 cut(s)	157
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	474, 612
BspCNI	CTCAG	1 cut(s)	179
BspEI	TCCGGA	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	179, 802
BspMI	ACCTGC	1 cut(s)	482
BspTI	CTTAAG	1 cut(s)	785
BspTNI	GGTCTC	1 cut(s)	533
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	298, 652
BssECI	CCNNGG	2 cut(s)	204, 543
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	3 cut(s)	544, 663, 840
Bst4CI	ACNGT	4 cut(s)	256, 367, 465, 690
Bst6I	CTCTTC	1 cut(s)	489
BstAFI	CTTAAG	1 cut(s)	785
BstAUI	TGTACA	1 cut(s)	756
BstBAI	YACGTR	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	166, 631
BstEII	GGTNACC	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 527
BstNI	CCWGG	3 cut(s)	544, 663, 840
BstNSI	RCATGY	1 cut(s)	558
BstPI	GGTNACC	1 cut(s)	494
BstSCI	CCNGG	4 cut(s)	215, 542, 661, 838
BstSNI	TACGTA	1 cut(s)	622
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	474, 612
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	177, 665
CsiI	ACCWGGT	1 cut(s)	661
Csp6I	GTAC	1 cut(s)	757
CviAII	CATG	5 cut(s)	323, 425, 433, 555, 849
CviQI	GTAC	1 cut(s)	757
DdeI	CTNAG	2 cut(s)	166, 631
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DraI	TTTAAA	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco105I	TACGTA	1 cut(s)	622
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	2 cut(s)	177, 665
Eco91I	GGTNACC	1 cut(s)	494
EcoO65I	GGTNACC	1 cut(s)	494
EcoRII	CCWGG	3 cut(s)	542, 661, 838
FaeI	CATG	5 cut(s)	326, 428, 436, 558, 852
FatI	CATG	5 cut(s)	322, 424, 432, 554, 848
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	2 cut(s)	60, 500
GluI	GCNGC	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	474, 612
HapII	CCGG	3 cut(s)	158, 175, 216
Hin1II	CATG	5 cut(s)	326, 428, 436, 558, 852
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	4 cut(s)	481, 512, 671, 716
HpaII	CCGG	3 cut(s)	158, 175, 216
HphI	GGTGA	2 cut(s)	240, 651
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	4 cut(s)	188, 353, 417, 679
Hpy188III	TCNNGA	3 cut(s)	158, 478, 668
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	1 cut(s)	469
HpyAV	CCTTC	4 cut(s)	94, 246, 518, 766
HpyCH4III	ACNGT	4 cut(s)	256, 367, 465, 690
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	5 cut(s)	314, 363, 447, 560, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 527
HpyF3I	CTNAG	2 cut(s)	166, 631
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	5 cut(s)	326, 428, 436, 558, 852
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	1 cut(s)	505
MabI	ACCWGGT	1 cut(s)	661
MaeI	CTAG	2 cut(s)	60, 500
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	494, 742
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	8 cut(s)	84, 120, 231, 234, 237, 476, 560, 776
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	6 cut(s)	289, 504, 590, 624, 752, 828
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	6 cut(s)	107, 214, 334, 444, 485, 612
MroI	TCCGGA	1 cut(s)	157
MseI	TTAA	5 cut(s)	45, 749, 786, 807, 827
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	3 cut(s)	158, 175, 216
MspR9I	CCNGG	4 cut(s)	217, 544, 663, 840
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	2 cut(s)	280, 686
MvaI	CCWGG	3 cut(s)	544, 663, 840
MwoI	GCNNNNNNNGC	2 cut(s)	303, 527
NciI	CCSGG	1 cut(s)	217
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	5 cut(s)	326, 428, 436, 558, 852
NlaIV	GGNNCC	2 cut(s)	179, 802
NmeAIII	GCCGAG	1 cut(s)	185
NspI	RCATGY	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PctI	GAATGC	2 cut(s)	280, 686
PfeI	GAWTC	3 cut(s)	512, 671, 716
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Ppu21I	YACGTR	1 cut(s)	622
PshBI	ATTAAT	1 cut(s)	807
Psp6I	CCWGG	3 cut(s)	542, 661, 838
PspEI	GGTNACC	1 cut(s)	494
PspGI	CCWGG	3 cut(s)	542, 661, 838
PspN4I	GGNNCC	2 cut(s)	179, 802
PspPI	GGNCC	2 cut(s)	177, 665
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	758
RsaNI	GTAC	1 cut(s)	757
RseI	CAYNNNNRTG	1 cut(s)	679
SaqAI	TTAA	5 cut(s)	45, 749, 786, 807, 827
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	177, 665
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	4 cut(s)	217, 544, 663, 840
SexAI	ACCWGGT	1 cut(s)	661
SinI	GGWCC	2 cut(s)	177, 665
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SnaBI	TACGTA	1 cut(s)	622
Sse9I	AATT	6 cut(s)	289, 504, 590, 624, 752, 828
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	2 cut(s)	60, 500
StyD4I	CCNGG	4 cut(s)	215, 542, 661, 838
TaaI	ACNGT	4 cut(s)	256, 367, 465, 690
TaiI	ACGT	1 cut(s)	624
TasI	AATT	6 cut(s)	289, 504, 590, 624, 752, 828
TatI	WGTACW	1 cut(s)	756
TfiI	GAWTC	3 cut(s)	512, 671, 716
Tru1I	TTAA	5 cut(s)	45, 749, 786, 807, 827
Tru9I	TTAA	5 cut(s)	45, 749, 786, 807, 827
TscAI	CASTG	1 cut(s)	305
TseI	GCWGC	1 cut(s)	518
TspDTI	ATGAA	2 cut(s)	21, 76
TspRI	CASTG	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	785
VpaK11BI	GGWCC	2 cut(s)	177, 665
VspI	ATTAAT	1 cut(s)	807
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	558
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 305
XspI	CTAG	2 cut(s)	60, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.