Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Reverse (-)

23422839 .. 23426448

Gene Structure 3610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG227100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCTCAAAACCATACAGATCTTGGGCTCTTCATCTGGGTTGGTCAAGCCCCAAACTACTAGTTGTTGTAGACTCTCCTTCATTTCTTCCATCTCCACCAAACCTTTCTCTTCTTGTTCAAGACCAACCAATTTGCTATTTCCGGGGCCCTCAGCTCGCCGGACTCGTTTCGGAGCTTTCAGCATGTCCTCGGCTCATTCCGGGTCTAACCCAGCTGCCCCTTCTTCTTCTTCTTCTTCATCGTCAACTGTGGTTCAGTCAGTTGGCAATGCTCGTAAGATCAATTTCTGCCAGTGGTGCGGTGGTCCAACAAAGCATGAGGTACCTGATGGAGAGGAGAAAATAAGAGCTATTTGCACCGTTTGTGACAGGATTGCCTATGAGAACCCGAAAATGGTTGTGGGATGTTTGATTGAGCATGATAACATGGTTCTACTTTGCAAGAGGAACATTCAACCATCATATGGTCTCTGGACTCTTCCAGCAGGTTACCTAGAAATTGGGGAATCAGCTGCAGAAGGAGCAATAAGGGAAACCTGGGAAGAAGCATGTGCAGAAGTTGAAATTGTATCACCTTTTGCTCAGTTGGACATCCCTCTAATAGGCCAGACTTACATAATTTTCTTAGCAAGGCTGAAGAAAGCCCAGTTTTCACCAGGTCCTGAATCATCAGAATGCCGACTGTTTGCACTTGATGATATACCTTTTGATTCTCTGTCATTCTCGTCAATGGTAGTTACTTTAAAATTGTATGCTGAAGATGTGAAGGCCGGGAAAGTTAAGTTCCACTATGGAACCATTAATAAAAGGTGCGTTCAGTTATATGATTTTCCAGGTATAAAAGAGTACAACGTTTGCAATTTCTGCTGTTCTAGGGATAAAAATGACTCATTGACATTTGGCAAGACAAAGGACAAAAAAAGTCCAACCACATCTAGAATGGAATTAGACATTATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

320

Amino Acids

35.11

Weight (kDa)

8.3

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Nudix	PF14803	95 - 128	6.5e-13	Nudix N-terminal
NUDIX	PF00293	132 - 234	4.9e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	476
Acc65I	GGTACC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	1 cut(s)	300
AclI	AACGTT	1 cut(s)	852
AcuI	CTGAAG	2 cut(s)	656, 777
AfaI	GTAC	2 cut(s)	324, 848
AfiI	CCNNNNNNNGG	3 cut(s)	394, 464, 602
AgsI	TTSAA	3 cut(s)	120, 455, 563
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	3 cut(s)	536, 655, 832
AluBI	AGCT	5 cut(s)	155, 176, 215, 350, 512
AluI	AGCT	5 cut(s)	155, 176, 215, 350, 512
Alw26I	GTCTC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	3 cut(s)	146, 604, 768
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	215, 512
AseI	ATTAAT	1 cut(s)	801
Asp718I	GGTACC	1 cut(s)	322
AspS9I	GGNCC	4 cut(s)	146, 147, 305, 659
AsuC2I	CCSGG	3 cut(s)	144, 202, 772
AsuHPI	GGTGA	2 cut(s)	564, 645
AvaII	GGWCC	2 cut(s)	305, 659
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	2 cut(s)	29, 150
BbvCI	CCTCAGC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	202, 499
BccI	CCATC	3 cut(s)	98, 323, 466
BciT130I	CCWGG	3 cut(s)	538, 657, 834
BcnI	CCSGG	3 cut(s)	144, 202, 772
BcoDI	GTCTC	1 cut(s)	473
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	4 cut(s)	60, 494, 873, 936
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	2 cut(s)	216, 513
BlsI	GCNGC	2 cut(s)	217, 514
Bme1390I	CCNGG	6 cut(s)	144, 202, 538, 657, 772, 834
Bme18I	GGWCC	2 cut(s)	305, 659
BmgT120I	GGNCC	4 cut(s)	146, 147, 305, 659
BmiI	GGNNCC	4 cut(s)	147, 148, 324, 796
BmrFI	CCNGG	6 cut(s)	144, 202, 538, 657, 772, 834
BmrI	ACTGGG	1 cut(s)	640
BmuI	ACTGGG	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	151
BpuMI	CCSGG	3 cut(s)	144, 202, 772
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	143, 189, 537
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 464, 602
Bse1I	ACTGG	2 cut(s)	292, 646
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	3 cut(s)	538, 657, 834
BseDI	CCNNGG	3 cut(s)	143, 189, 537
BseGI	GGATG	2 cut(s)	410, 591
BseLI	CCNNNNNNNGG	3 cut(s)	394, 464, 602
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	165, 596
BseNI	ACTGG	2 cut(s)	292, 646
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	202, 499
BseYI	CCCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	148, 606, 770
BshNI	GGYRCC	1 cut(s)	322
BsiSI	CCGG	4 cut(s)	143, 160, 201, 771
BslI	CCNNNNNNNGG	3 cut(s)	394, 464, 602
BsmAI	GTCTC	1 cut(s)	473
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	3 cut(s)	148, 606, 770
Bso31I	GGTCTC	1 cut(s)	473
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	29, 150
Bsp143I	GATC	2 cut(s)	18, 279
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	3 cut(s)	148, 606, 770
BspCNI	CTCAG	2 cut(s)	164, 595
BspLI	GGNNCC	4 cut(s)	147, 148, 324, 796
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	476
BspQI	GCTCTTC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	292, 646
BssECI	CCNNGG	3 cut(s)	143, 189, 537
BssMI	GATC	2 cut(s)	18, 279
Bst2UI	CCWGG	3 cut(s)	538, 657, 834
Bst4CI	ACNGT	3 cut(s)	250, 361, 684
Bst6I	CTCTTC	3 cut(s)	34, 115, 483
BstAPI	GCANNNNNTGC	1 cut(s)	864
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	151, 582, 625
BstEII	GGTNACC	1 cut(s)	488
BstENI	CCTNNNNNAGG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	410, 591
BstKTI	GATC	2 cut(s)	21, 282
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	18, 279
BstMWI	GCNNNNNNNGC	3 cut(s)	297, 521, 864
BstNI	CCWGG	3 cut(s)	538, 657, 834
BstNSI	RCATGY	2 cut(s)	187, 552
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	6 cut(s)	142, 200, 536, 655, 770, 832
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	202, 499
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	148, 606, 770
BtsCI	GGATG	2 cut(s)	410, 591
BtsIMutI	CAGTG	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	662
Cfr13I	GGNCC	4 cut(s)	146, 147, 305, 659
CsiI	ACCWGGT	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	323, 847
CviAII	CATG	5 cut(s)	184, 317, 419, 427, 549
CviQI	GTAC	2 cut(s)	323, 847
DdeI	CTNAG	3 cut(s)	151, 582, 625
DpnI	GATC	2 cut(s)	20, 281
DpnII	GATC	2 cut(s)	18, 279
DraI	TTTAAA	1 cut(s)	744
Eam1104I	CTCTTC	3 cut(s)	34, 115, 483
EarI	CTCTTC	3 cut(s)	34, 115, 483
Eco24I	GRGCYC	2 cut(s)	29, 150
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	2 cut(s)	305, 659
Eco57I	CTGAAG	2 cut(s)	656, 777
Eco91I	GGTNACC	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	600
EcoO109I	RGGNCCY	3 cut(s)	146, 147, 659
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	3 cut(s)	536, 655, 832
EcoT38I	GRGCYC	2 cut(s)	29, 150
FaeI	CATG	5 cut(s)	187, 320, 422, 430, 552
FatI	CATG	5 cut(s)	183, 316, 418, 426, 548
FauNDI	CATATG	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	216, 513
FokI	GGATG	2 cut(s)	417, 578
FriOI	GRGCYC	2 cut(s)	29, 150
Fsp4HI	GCNGC	2 cut(s)	216, 513
FspBI	CTAG	4 cut(s)	60, 494, 873, 936
GluI	GCNGC	2 cut(s)	216, 513
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	148, 606, 770
HapII	CCGG	4 cut(s)	143, 160, 201, 771
Hin1II	CATG	5 cut(s)	187, 320, 422, 430, 552
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	7 cut(s)	72, 163, 475, 506, 665, 710, 887
HpaII	CCGG	4 cut(s)	143, 160, 201, 771
HphI	GGTGA	2 cut(s)	564, 645
Hpy166II	GTNNAC	2 cut(s)	71, 246
Hpy188I	TCNGA	2 cut(s)	173, 673
Hpy188III	TCNNGA	4 cut(s)	120, 472, 662, 936
Hpy8I	GTNNAC	2 cut(s)	71, 246
HpyAV	CCTTC	4 cut(s)	88, 231, 512, 760
HpyCH4III	ACNGT	3 cut(s)	250, 361, 684
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	6 cut(s)	357, 441, 515, 554, 689, 858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	297, 521, 864
HpyF3I	CTNAG	3 cut(s)	151, 582, 625
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	5 cut(s)	187, 320, 422, 430, 552
KpnI	GGTACC	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	18, 279
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	173, 521
Lsp1109I	GCAGC	2 cut(s)	202, 499
MabI	ACCWGGT	1 cut(s)	655
MaeI	CTAG	4 cut(s)	60, 494, 873, 936
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	3 cut(s)	365, 488, 736
MalI	GATC	2 cut(s)	20, 281
MboI	GATC	2 cut(s)	18, 279
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	29, 150
MluCI	AATT	8 cut(s)	130, 283, 498, 564, 618, 746, 859, 944
MlyI	GAGTC	4 cut(s)	66, 157, 469, 881
MmeI	TCCRAC	3 cut(s)	332, 567, 950
MnlI	CCTC	6 cut(s)	160, 199, 313, 328, 438, 606
MseI	TTAA	3 cut(s)	743, 780, 801
MslI	CAYNNNNRTG	1 cut(s)	673
MspA1I	CMGCKG	2 cut(s)	215, 512
MspI	CCGG	4 cut(s)	143, 160, 201, 771
MspR9I	CCNGG	6 cut(s)	144, 202, 538, 657, 772, 834
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	3 cut(s)	538, 657, 834
MwoI	GCNNNNNNNGC	3 cut(s)	297, 521, 864
NciI	CCSGG	3 cut(s)	144, 202, 772
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	18, 279
NlaIII	CATG	5 cut(s)	187, 320, 422, 430, 552
NlaIV	GGNNCC	4 cut(s)	147, 148, 324, 796
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	2 cut(s)	187, 552
PciSI	GCTCTTC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	506, 665, 710
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	217, 514
PleI	GAGTC	4 cut(s)	66, 157, 469, 881
PpsI	GAGTC	4 cut(s)	66, 157, 469, 881
PpuMI	RGGWCCY	1 cut(s)	659
PshBI	ATTAAT	1 cut(s)	801
Psp1406I	AACGTT	1 cut(s)	852
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	3 cut(s)	536, 655, 832
PspEI	GGTNACC	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	3 cut(s)	536, 655, 832
PspN4I	GGNNCC	4 cut(s)	147, 148, 324, 796
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	146, 147, 305, 659
PspPPI	RGGWCCY	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	215, 512
RsaI	GTAC	2 cut(s)	324, 848
RsaNI	GTAC	2 cut(s)	323, 847
RseI	CAYNNNNRTG	1 cut(s)	673
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	743, 780, 801
SatI	GCNGC	2 cut(s)	216, 513
Sau3AI	GATC	2 cut(s)	18, 279
Sau96I	GGNCC	4 cut(s)	146, 147, 305, 659
SchI	GAGTC	4 cut(s)	66, 157, 469, 881
ScrFI	CCNGG	6 cut(s)	144, 202, 538, 657, 772, 834
SduI	GDGCHC	2 cut(s)	29, 150
SexAI	ACCWGGT	1 cut(s)	655
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	2 cut(s)	305, 659
SmiMI	CAYNNNNRTG	1 cut(s)	673
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	8 cut(s)	130, 283, 498, 564, 618, 746, 859, 944
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	4 cut(s)	60, 494, 873, 936
StyD4I	CCNGG	6 cut(s)	142, 200, 536, 655, 770, 832
TaaI	ACNGT	3 cut(s)	250, 361, 684
TaiI	ACGT	1 cut(s)	855
TasI	AATT	8 cut(s)	130, 283, 498, 564, 618, 746, 859, 944
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	3 cut(s)	506, 665, 710
Tru1I	TTAA	3 cut(s)	743, 780, 801
Tru9I	TTAA	3 cut(s)	743, 780, 801
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	2 cut(s)	215, 512
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	21, 70, 228
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	305, 659
VspI	ATTAAT	1 cut(s)	801
XagI	CCTNNNNNAGG	1 cut(s)	600
XbaI	TCTAGA	1 cut(s)	935
XceI	RCATGY	2 cut(s)	187, 552
XcmI	CCANNNNNNNNNTGG	3 cut(s)	19, 299, 937
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	4 cut(s)	60, 494, 873, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.