Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Forward (+)

24534065 .. 24537588

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCTCAAAACCATACAGATCTTGGGCTCTTCATCTGGGTTGGTTAAGCCCCAAACTACTAGTTGTTGTAGGCTCTCCTTCATTTCTTCCATCTCCACCAAACCTTTCTCTTCTTCCTCAAGGCCAACCAATTTGATATTTCCGGGGCCCTCAGCTCGCCGGACTCGTTTCGGAGCTTTCAGCATGTCCTCGGCTCATTCCGGGTCAAACCCAGCTGCCCCTTCTTCTTCTTCTTCATCATCATCAACTGTGGTTCAGTCAGTTGGCAATGCTCGTAAGATCAATTTCTGCCAGTGGTGCGGTGGTGCAACAAAGCATGAGGTACCTGATGGAGAGGAGAAAATAAGAGCTATTTGCACAGTTTGTGACAGGATTGCCTATGAGAACCCAAAAATGGTTGTGGGATGTTTGATTGAGCATGATAACATGGTTCTACTTTGCAAGAGGAACATTCAACCATCATATGGTCTGTGGACTCTTCCAGCAGGTTACCTAGAAATTGGGGAATCAGCTGCAGAAGGAGCAATAAGGGAAACCTGGGAAGAAGCATGTGCAGAAGTTGAAATTGTATCACCTTTTGCTCAGTTGGACATCCCTCTAATAGGCCAGACTTACATAATTTTCTTAGCAAGGCTGAAGAAAGCCCAGTTTTCACCAGGTCCAGAATCATCAGAATGCCGACTGTTTGCACTTGATGATATACCTTTTGATTCTCTGTCATTCTCGTCAATGGTAGTTACTTTAAAATTGTATGCTGAAGATGTGAAGGCCGGGAAAGTTAAGTTCCACTATGGAACCATTAATAAAAGGCCTGGCACAAGTCCTTCTGACATTAATGCCTATACTTTGGATCATCATATGCAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

289

Amino Acids

31.36

Weight (kDa)

8.01

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Nudix	PF14803	95 - 128	1.9e-12	Nudix N-terminal
NUDIX	PF00293	132 - 234	3.9e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	476
Acc65I	GGTACC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	858
AcuI	CTGAAG	2 cut(s)	656, 777
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	394, 464, 602
AgsI	TTSAA	2 cut(s)	455, 563
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	3 cut(s)	536, 655, 811
AluBI	AGCT	5 cut(s)	155, 176, 215, 350, 512
AluI	AGCT	5 cut(s)	155, 176, 215, 350, 512
AlwI	GGATC	1 cut(s)	858
AoxI	GGCC	5 cut(s)	122, 146, 604, 768, 809
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	215, 512
AseI	ATTAAT	2 cut(s)	801, 834
Asp718I	GGTACC	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	146, 147, 659
AsuC2I	CCSGG	3 cut(s)	144, 202, 772
AsuHPI	GGTGA	2 cut(s)	564, 645
AvaII	GGWCC	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	2 cut(s)	29, 150
BbvCI	CCTCAGC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	202, 499
BccI	CCATC	3 cut(s)	98, 323, 466
BciT130I	CCWGG	3 cut(s)	538, 657, 813
BcnI	CCSGG	3 cut(s)	144, 202, 772
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	2 cut(s)	60, 494
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	2 cut(s)	216, 513
BlsI	GCNGC	2 cut(s)	217, 514
Bme1390I	CCNGG	6 cut(s)	144, 202, 538, 657, 772, 813
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	3 cut(s)	146, 147, 659
BmiI	GGNNCC	4 cut(s)	147, 148, 324, 796
BmrFI	CCNGG	6 cut(s)	144, 202, 538, 657, 772, 813
BmrI	ACTGGG	1 cut(s)	640
BmuI	ACTGGG	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	3 cut(s)	144, 202, 772
BsaJI	CCNNGG	3 cut(s)	143, 189, 537
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 464, 602
Bse1I	ACTGG	2 cut(s)	292, 646
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	3 cut(s)	538, 657, 813
BseDI	CCNNGG	3 cut(s)	143, 189, 537
BseGI	GGATG	2 cut(s)	410, 591
BseLI	CCNNNNNNNGG	3 cut(s)	394, 464, 602
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	165, 596
BseNI	ACTGG	2 cut(s)	292, 646
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	202, 499
BseYI	CCCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	5 cut(s)	124, 148, 606, 770, 811
BshNI	GGYRCC	1 cut(s)	322
BsiSI	CCGG	4 cut(s)	143, 160, 201, 771
BslI	CCNNNNNNNGG	3 cut(s)	394, 464, 602
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	5 cut(s)	124, 148, 606, 770, 811
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	29, 150
Bsp143I	GATC	3 cut(s)	18, 279, 850
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	5 cut(s)	124, 148, 606, 770, 811
BspCNI	CTCAG	2 cut(s)	164, 595
BspLI	GGNNCC	4 cut(s)	147, 148, 324, 796
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	858
BspQI	GCTCTTC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	292, 646
BssECI	CCNNGG	3 cut(s)	143, 189, 537
BssMI	GATC	3 cut(s)	18, 279, 850
Bst2UI	CCWGG	3 cut(s)	538, 657, 813
Bst4CI	ACNGT	3 cut(s)	250, 361, 684
Bst6I	CTCTTC	3 cut(s)	34, 115, 483
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	151, 582, 625
BstEII	GGTNACC	1 cut(s)	488
BstENI	CCTNNNNNAGG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	410, 591
BstKTI	GATC	3 cut(s)	21, 282, 853
BstMBI	GATC	3 cut(s)	18, 279, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 521
BstNI	CCWGG	3 cut(s)	538, 657, 813
BstNSI	RCATGY	2 cut(s)	187, 552
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	6 cut(s)	142, 200, 536, 655, 770, 811
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	202, 499
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	5 cut(s)	124, 148, 606, 770, 811
BtsCI	GGATG	2 cut(s)	410, 591
BtsIMutI	CAGTG	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	146, 147, 659
CsiI	ACCWGGT	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	5 cut(s)	184, 317, 419, 427, 549
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	3 cut(s)	151, 582, 625
DpnI	GATC	3 cut(s)	20, 281, 852
DpnII	GATC	3 cut(s)	18, 279, 850
DraI	TTTAAA	1 cut(s)	744
Eam1104I	CTCTTC	3 cut(s)	34, 115, 483
EarI	CTCTTC	3 cut(s)	34, 115, 483
Eco147I	AGGCCT	1 cut(s)	811
Eco24I	GRGCYC	2 cut(s)	29, 150
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	2 cut(s)	656, 777
Eco91I	GGTNACC	1 cut(s)	488
EcoNI	CCTNNNNNAGG	1 cut(s)	600
EcoO109I	RGGNCCY	2 cut(s)	146, 147
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	3 cut(s)	536, 655, 811
EcoT38I	GRGCYC	2 cut(s)	29, 150
FaeI	CATG	5 cut(s)	187, 320, 422, 430, 552
FatI	CATG	5 cut(s)	183, 316, 418, 426, 548
FauNDI	CATATG	2 cut(s)	463, 858
Fnu4HI	GCNGC	2 cut(s)	216, 513
FokI	GGATG	2 cut(s)	417, 578
FriOI	GRGCYC	2 cut(s)	29, 150
Fsp4HI	GCNGC	2 cut(s)	216, 513
FspBI	CTAG	2 cut(s)	60, 494
GluI	GCNGC	2 cut(s)	216, 513
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	5 cut(s)	124, 148, 606, 770, 811
HapII	CCGG	4 cut(s)	143, 160, 201, 771
Hin1II	CATG	5 cut(s)	187, 320, 422, 430, 552
HinfI	GANTC	5 cut(s)	163, 475, 506, 665, 710
HpaII	CCGG	4 cut(s)	143, 160, 201, 771
HphI	GGTGA	2 cut(s)	564, 645
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	3 cut(s)	173, 673, 829
Hpy188III	TCNNGA	2 cut(s)	662, 867
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	5 cut(s)	88, 231, 512, 760, 834
HpyCH4III	ACNGT	3 cut(s)	250, 361, 684
HpyCH4V	TGCA	7 cut(s)	308, 357, 441, 515, 554, 689, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 521
HpyF3I	CTNAG	3 cut(s)	151, 582, 625
Hsp92II	CATG	5 cut(s)	187, 320, 422, 430, 552
KpnI	GGTACC	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	18, 279, 850
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	173, 521
Lsp1109I	GCAGC	2 cut(s)	202, 499
MabI	ACCWGGT	1 cut(s)	655
MaeI	CTAG	2 cut(s)	60, 494
MaeIII	GTNAC	3 cut(s)	365, 488, 736
MalI	GATC	3 cut(s)	20, 281, 852
MboI	GATC	3 cut(s)	18, 279, 850
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	29, 150
MluCI	AATT	6 cut(s)	130, 283, 498, 564, 618, 746
MlyI	GAGTC	2 cut(s)	157, 469
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	7 cut(s)	127, 160, 199, 313, 328, 438, 606
MseI	TTAA	5 cut(s)	45, 743, 780, 801, 834
MslI	CAYNNNNRTG	1 cut(s)	673
MspA1I	CMGCKG	2 cut(s)	215, 512
MspI	CCGG	4 cut(s)	143, 160, 201, 771
MspR9I	CCNGG	6 cut(s)	144, 202, 538, 657, 772, 813
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	3 cut(s)	538, 657, 813
MwoI	GCNNNNNNNGC	2 cut(s)	297, 521
NciI	CCSGG	3 cut(s)	144, 202, 772
NdeI	CATATG	2 cut(s)	463, 858
NdeII	GATC	3 cut(s)	18, 279, 850
NlaIII	CATG	5 cut(s)	187, 320, 422, 430, 552
NlaIV	GGNNCC	4 cut(s)	147, 148, 324, 796
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	2 cut(s)	187, 552
PceI	AGGCCT	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	506, 665, 710
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	217, 514
PleI	GAGTC	2 cut(s)	157, 469
PpsI	GAGTC	2 cut(s)	157, 469
PshBI	ATTAAT	2 cut(s)	801, 834
Psp6I	CCWGG	3 cut(s)	536, 655, 811
PspEI	GGTNACC	1 cut(s)	488
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	3 cut(s)	536, 655, 811
PspN4I	GGNNCC	4 cut(s)	147, 148, 324, 796
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	3 cut(s)	146, 147, 659
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	215, 512
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	673
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	5 cut(s)	45, 743, 780, 801, 834
SatI	GCNGC	2 cut(s)	216, 513
Sau3AI	GATC	3 cut(s)	18, 279, 850
Sau96I	GGNCC	3 cut(s)	146, 147, 659
SchI	GAGTC	2 cut(s)	157, 469
ScrFI	CCNGG	6 cut(s)	144, 202, 538, 657, 772, 813
SduI	GDGCHC	2 cut(s)	29, 150
SexAI	ACCWGGT	1 cut(s)	655
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	673
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	6 cut(s)	130, 283, 498, 564, 618, 746
SseBI	AGGCCT	1 cut(s)	811
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	2 cut(s)	60, 494
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	6 cut(s)	142, 200, 536, 655, 770, 811
TaaI	ACNGT	3 cut(s)	250, 361, 684
TasI	AATT	6 cut(s)	130, 283, 498, 564, 618, 746
TfiI	GAWTC	3 cut(s)	506, 665, 710
Tru1I	TTAA	5 cut(s)	45, 743, 780, 801, 834
Tru9I	TTAA	5 cut(s)	45, 743, 780, 801, 834
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	2 cut(s)	215, 512
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	21, 70, 225
TspRI	CASTG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	659
VspI	ATTAAT	2 cut(s)	801, 834
XagI	CCTNNNNNAGG	1 cut(s)	600
XceI	RCATGY	2 cut(s)	187, 552
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 299
XspI	CTAG	2 cut(s)	60, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.