Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004732.1

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Forward (+)

1347 .. 3932

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004732.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgctcaaaaccatacagatcttggggtcttcatctgggttggttaagccccaaactactagttgttgtagactctccttcttttcttccatctccaccaaacctttctcttcttgttcaagaccaaccaatttgctatctccggggccctcagctcgccggactcgtttcggagctttcagcatgtcctcggctcattccgggtcaaacccagctgccccttcttcttcatcatccactgtggttcagtcagttggcaatgctcgtaagatcaatttctgccagtggtgcggtggtgcaacaaagcatgaggtacctgatggagaggagaaaataagagctatttgcaccgtttgtgacaggattgcctatgagaacccgaaaatggttgtgggatgtttgattgagcatgataacatggttctactttgcaagaggaacattcaaccatcatatggtctctggactcttccagcaggttacctagaaattggggaatcggctgcagaaggagcaataagggaaacctgggaagaagcatgtgcagaagttgaaattgtatcaccttttgctcagttggacatccctctaataggccagacttacataattttcttagcaaggctgaagaaagcccagttttcaccaggtcctgaatcatcagaatgccgactgtttgcacttgatgatataccttttgattctctgtcattctcgtcaatggtagttactttaaaattgtacgctgaagatgtgaaggccgggaaagttaagttccactatggaaccattaataaaaggcctggcacaagtccttctgacattaatgcctatactttggatcatcatatgcagtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

286

Amino Acids

31.09

Weight (kDa)

7.98

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	467
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	313
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	1 cut(s)	849
AcuI	CTGAAG	2 cut(s)	647, 768
AfaI	GTAC	2 cut(s)	315, 743
AfiI	CCNNNNNNNGG	3 cut(s)	385, 455, 593
AgsI	TTSAA	3 cut(s)	120, 446, 554
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	3 cut(s)	527, 646, 802
AluBI	AGCT	4 cut(s)	155, 176, 215, 341
AluI	AGCT	4 cut(s)	155, 176, 215, 341
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	849
AlwNI	CAGNNNCTG	1 cut(s)	653
AoxI	GGCC	4 cut(s)	146, 595, 759, 800
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	215, 503
AseI	ATTAAT	2 cut(s)	792, 825
Asp718I	GGTACC	1 cut(s)	313
AspS9I	GGNCC	3 cut(s)	146, 147, 650
AsuC2I	CCSGG	3 cut(s)	144, 202, 763
AsuHPI	GGTGA	2 cut(s)	555, 636
AvaII	GGWCC	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	202, 490
BccI	CCATC	3 cut(s)	98, 314, 457
BciT130I	CCWGG	3 cut(s)	529, 648, 804
BcnI	CCSGG	3 cut(s)	144, 202, 763
BcoDI	GTCTC	1 cut(s)	464
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	2 cut(s)	60, 485
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	467
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	2 cut(s)	216, 504
BlsI	GCNGC	2 cut(s)	217, 505
Bme1390I	CCNGG	6 cut(s)	144, 202, 529, 648, 763, 804
Bme18I	GGWCC	1 cut(s)	650
BmgT120I	GGNCC	3 cut(s)	146, 147, 650
BmiI	GGNNCC	4 cut(s)	147, 148, 315, 787
BmrFI	CCNGG	6 cut(s)	144, 202, 529, 648, 763, 804
BmrI	ACTGGG	1 cut(s)	631
BmuI	ACTGGG	1 cut(s)	631
BpiI	GAAGAC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	151
BpuMI	CCSGG	3 cut(s)	144, 202, 763
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	143, 189, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 455, 593
Bse1I	ACTGG	2 cut(s)	283, 637
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	3 cut(s)	529, 648, 804
BseDI	CCNNGG	3 cut(s)	143, 189, 528
BseGI	GGATG	3 cut(s)	233, 401, 582
BseLI	CCNNNNNNNGG	3 cut(s)	385, 455, 593
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	165, 587
BseNI	ACTGG	2 cut(s)	283, 637
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	202, 490
BseYI	CCCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	4 cut(s)	148, 597, 761, 802
BshNI	GGYRCC	1 cut(s)	313
BsiSI	CCGG	4 cut(s)	143, 160, 201, 762
BslI	CCNNNNNNNGG	3 cut(s)	385, 455, 593
BsmAI	GTCTC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	4 cut(s)	148, 597, 761, 802
Bso31I	GGTCTC	1 cut(s)	464
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	18, 270, 841
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	4 cut(s)	148, 597, 761, 802
BspCNI	CTCAG	2 cut(s)	164, 586
BspLI	GGNNCC	4 cut(s)	147, 148, 315, 787
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	1 cut(s)	849
BspT107I	GGYRCC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	283, 637
BssECI	CCNNGG	3 cut(s)	143, 189, 528
BssMI	GATC	3 cut(s)	18, 270, 841
Bst2UI	CCWGG	3 cut(s)	529, 648, 804
Bst4CI	ACNGT	3 cut(s)	241, 352, 675
Bst6I	CTCTTC	2 cut(s)	115, 474
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	151, 573, 616
BstEII	GGTNACC	1 cut(s)	479
BstENI	CCTNNNNNAGG	1 cut(s)	591
BstF5I	GGATG	3 cut(s)	233, 401, 582
BstKTI	GATC	3 cut(s)	21, 273, 844
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	3 cut(s)	18, 270, 841
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 512
BstNI	CCWGG	3 cut(s)	529, 648, 804
BstNSI	RCATGY	2 cut(s)	187, 543
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	6 cut(s)	142, 200, 527, 646, 761, 802
BstSFI	CTRYAG	1 cut(s)	504
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	202, 490
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	148, 597, 761, 802
BtsCI	GGATG	3 cut(s)	233, 401, 582
BtsIMutI	CAGTG	2 cut(s)	237, 290
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	157
CaiI	CAGNNNCTG	1 cut(s)	653
Cfr13I	GGNCC	3 cut(s)	146, 147, 650
CsiI	ACCWGGT	1 cut(s)	646
Csp6I	GTAC	2 cut(s)	314, 742
CviAII	CATG	5 cut(s)	184, 308, 410, 418, 540
CviQI	GTAC	2 cut(s)	314, 742
DdeI	CTNAG	3 cut(s)	151, 573, 616
DpnI	GATC	3 cut(s)	20, 272, 843
DpnII	GATC	3 cut(s)	18, 270, 841
DraI	TTTAAA	1 cut(s)	735
Eam1104I	CTCTTC	2 cut(s)	115, 474
EarI	CTCTTC	2 cut(s)	115, 474
Eco147I	AGGCCT	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	650
Eco57I	CTGAAG	2 cut(s)	647, 768
Eco91I	GGTNACC	1 cut(s)	479
EcoNI	CCTNNNNNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	3 cut(s)	146, 147, 650
EcoO65I	GGTNACC	1 cut(s)	479
EcoRII	CCWGG	3 cut(s)	527, 646, 802
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	5 cut(s)	187, 311, 413, 421, 543
FatI	CATG	5 cut(s)	183, 307, 409, 417, 539
FauNDI	CATATG	2 cut(s)	454, 849
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	216, 504
FokI	GGATG	3 cut(s)	220, 408, 569
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	216, 504
FspBI	CTAG	2 cut(s)	60, 485
GluI	GCNGC	2 cut(s)	216, 504
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	4 cut(s)	148, 597, 761, 802
HapII	CCGG	4 cut(s)	143, 160, 201, 762
Hin1II	CATG	5 cut(s)	187, 311, 413, 421, 543
HinfI	GANTC	6 cut(s)	72, 163, 466, 497, 656, 701
HpaII	CCGG	4 cut(s)	143, 160, 201, 762
HphI	GGTGA	2 cut(s)	555, 636
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	3 cut(s)	173, 664, 820
Hpy188III	TCNNGA	4 cut(s)	120, 463, 653, 858
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	5 cut(s)	88, 231, 503, 751, 825
HpyCH4III	ACNGT	3 cut(s)	241, 352, 675
HpyCH4V	TGCA	7 cut(s)	299, 348, 432, 506, 545, 680, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 512
HpyF3I	CTNAG	3 cut(s)	151, 573, 616
Hsp92II	CATG	5 cut(s)	187, 311, 413, 421, 543
KpnI	GGTACC	1 cut(s)	317
Kzo9I	GATC	3 cut(s)	18, 270, 841
LmnI	GCTCC	2 cut(s)	173, 512
Lsp1109I	GCAGC	2 cut(s)	202, 490
MabI	ACCWGGT	1 cut(s)	646
MaeI	CTAG	2 cut(s)	60, 485
MaeIII	GTNAC	3 cut(s)	356, 479, 727
MalI	GATC	3 cut(s)	20, 272, 843
MboI	GATC	3 cut(s)	18, 270, 841
MboII	GAAGA	9 cut(s)	21, 78, 102, 216, 219, 461, 545, 640, 761
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	6 cut(s)	130, 274, 489, 555, 609, 737
MlyI	GAGTC	3 cut(s)	66, 157, 460
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	6 cut(s)	160, 199, 304, 319, 429, 597
MseI	TTAA	5 cut(s)	45, 734, 771, 792, 825
MslI	CAYNNNNRTG	1 cut(s)	664
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	4 cut(s)	143, 160, 201, 762
MspR9I	CCNGG	6 cut(s)	144, 202, 529, 648, 763, 804
Mva1269I	GAATGC	1 cut(s)	671
MvaI	CCWGG	3 cut(s)	529, 648, 804
MwoI	GCNNNNNNNGC	2 cut(s)	288, 512
NciI	CCSGG	3 cut(s)	144, 202, 763
NdeI	CATATG	2 cut(s)	454, 849
NdeII	GATC	3 cut(s)	18, 270, 841
NlaIII	CATG	5 cut(s)	187, 311, 413, 421, 543
NlaIV	GGNNCC	4 cut(s)	147, 148, 315, 787
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	2 cut(s)	187, 543
PceI	AGGCCT	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PctI	GAATGC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	497, 656, 701
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	217, 505
PleI	GAGTC	3 cut(s)	66, 157, 460
PpsI	GAGTC	3 cut(s)	66, 157, 460
PpuMI	RGGWCCY	1 cut(s)	650
PshBI	ATTAAT	2 cut(s)	792, 825
Psp5II	RGGWCCY	1 cut(s)	650
Psp6I	CCWGG	3 cut(s)	527, 646, 802
PspEI	GGTNACC	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	3 cut(s)	527, 646, 802
PspN4I	GGNNCC	4 cut(s)	147, 148, 315, 787
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	3 cut(s)	146, 147, 650
PspPPI	RGGWCCY	1 cut(s)	650
PstI	CTGCAG	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	315, 743
RsaNI	GTAC	2 cut(s)	314, 742
RseI	CAYNNNNRTG	1 cut(s)	664
SaqAI	TTAA	5 cut(s)	45, 734, 771, 792, 825
SatI	GCNGC	2 cut(s)	216, 504
Sau3AI	GATC	3 cut(s)	18, 270, 841
Sau96I	GGNCC	3 cut(s)	146, 147, 650
SchI	GAGTC	3 cut(s)	66, 157, 460
ScrFI	CCNGG	6 cut(s)	144, 202, 529, 648, 763, 804
SduI	GDGCHC	1 cut(s)	150
SexAI	ACCWGGT	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	664
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	6 cut(s)	130, 274, 489, 555, 609, 737
SseBI	AGGCCT	1 cut(s)	802
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	60, 485
StuI	AGGCCT	1 cut(s)	802
StyD4I	CCNGG	6 cut(s)	142, 200, 527, 646, 761, 802
TaaI	ACNGT	3 cut(s)	241, 352, 675
TasI	AATT	6 cut(s)	130, 274, 489, 555, 609, 737
TfiI	GAWTC	3 cut(s)	497, 656, 701
Tru1I	TTAA	5 cut(s)	45, 734, 771, 792, 825
Tru9I	TTAA	5 cut(s)	45, 734, 771, 792, 825
TscAI	CASTG	2 cut(s)	244, 290
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	2 cut(s)	215, 503
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	21, 219
TspRI	CASTG	2 cut(s)	244, 290
Van91I	CCANNNNNTGG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	650
VspI	ATTAAT	2 cut(s)	792, 825
XagI	CCTNNNNNAGG	1 cut(s)	591
XceI	RCATGY	2 cut(s)	187, 543
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 290
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	2 cut(s)	60, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.