Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Reverse (-)

25249042 .. 25251688

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG260300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCTCAAAACCATACAGATCTTGGGGTCTTCATCTGGGTTGGTTAAGCCCCAAACTACTAGTTGTTGTAGACTCTCCTTCATTTCTTCCATCTCCACCAAACCTTTCTCTTCTTGTTCAAGGCCAACCAATTTGCTATTTCCGGGGCCCTCAGCTCGCCGGACTCGTTTCGGAGCTTTCAGCATGTCCTCAGCTCATTCCGGGTCAAACCCAGCTGCCCCTTCTTCTTCTTCTTCATCATCAACTGTGGTTCAGTCAGTTGGCAATGCTCGTAAGATCAATTTCTGCCAGTGGTGCGGTGGTGCAACAAAGCATGAGGTACCTGATGGAGAGGAGAAAATAAGAGCTATTTGCACAGTTTGTGACAGGATTGCCTATGAGAACCCAAAAATGGTTGTGGGATGTTTGATTGAGCATGATAACATGGTTCTACTTTGCAAGAGGAACATTCAACCATCATATGGTCTCTGGACTCTTCCAGCAGGTTACCTAGAAATTGGGGAATCAGCTGCAGAAGGAGCAATAAGGGAAACCTGGGAAGAAGCATGTGCAGAAGTTGAAATTGTATCACCTTTTGCTCAGTTGGACATCCCTCTAATAGGCCAGACTTACATAATTTTCTTAGCAAGGCTGAAGAAAGCCCAGTTTTCACCAGGTCCAGAATCATCAGAATGCCGACTGTTTGCACTTGATGATATACCTTTTGATTCTCTGTCATTCTCGTCAATGGTAGTTACTTTAAAATTGTATGCTGAAGATGTGAAGGCCGGGAAAGTTAAGTTCCACTATGGAACCATTAATAAAAGGCCCGGCACAAGTCCTTCTGACATTAATGCCTATACTTTGGATCATCATATGCAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

288

Amino Acids

31.29

Weight (kDa)

7.98

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Nudix	PF14803	94 - 127	1.9e-12	Nudix N-terminal
NUDIX	PF00293	131 - 233	3.9e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	70
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	1 cut(s)	855
AcuI	CTGAAG	2 cut(s)	653, 774
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	3 cut(s)	391, 461, 599
AgsI	TTSAA	3 cut(s)	120, 452, 560
AhlI	ACTAGT	1 cut(s)	59
AjnI	CCWGG	2 cut(s)	533, 652
AluBI	AGCT	6 cut(s)	155, 176, 194, 215, 347, 509
AluI	AGCT	6 cut(s)	155, 176, 194, 215, 347, 509
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	1 cut(s)	855
AoxI	GGCC	5 cut(s)	122, 146, 601, 765, 806
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	215, 509
AseI	ATTAAT	2 cut(s)	798, 831
Asp718I	GGTACC	1 cut(s)	319
AspS9I	GGNCC	4 cut(s)	146, 147, 656, 807
AsuC2I	CCSGG	4 cut(s)	144, 202, 769, 810
AsuHPI	GGTGA	2 cut(s)	561, 642
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	21
BbvCI	CCTCAGC	2 cut(s)	151, 190
BbvI	GCAGC	2 cut(s)	202, 496
BccI	CCATC	3 cut(s)	98, 320, 463
BciT130I	CCWGG	2 cut(s)	535, 654
BcnI	CCSGG	4 cut(s)	144, 202, 769, 810
BcoDI	GTCTC	1 cut(s)	470
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	2 cut(s)	60, 491
BfmI	CTRYAG	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	473
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	2 cut(s)	216, 510
BlsI	GCNGC	2 cut(s)	217, 511
Bme1390I	CCNGG	6 cut(s)	144, 202, 535, 654, 769, 810
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	4 cut(s)	146, 147, 656, 807
BmiI	GGNNCC	4 cut(s)	147, 148, 321, 793
BmrFI	CCNGG	6 cut(s)	144, 202, 535, 654, 769, 810
BmrI	ACTGGG	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	21
Bpu10I	CCTNAGC	2 cut(s)	151, 190
BpuMI	CCSGG	4 cut(s)	144, 202, 769, 810
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	143, 534
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 461, 599
Bse1I	ACTGG	2 cut(s)	289, 643
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	535, 654
BseDI	CCNNGG	2 cut(s)	143, 534
BseGI	GGATG	2 cut(s)	407, 588
BseLI	CCNNNNNNNGG	3 cut(s)	391, 461, 599
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	3 cut(s)	165, 204, 593
BseNI	ACTGG	2 cut(s)	289, 643
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	202, 496
BseYI	CCCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	5 cut(s)	124, 148, 603, 767, 808
BshNI	GGYRCC	1 cut(s)	319
BsiSI	CCGG	5 cut(s)	143, 160, 201, 768, 810
BslI	CCNNNNNNNGG	3 cut(s)	391, 461, 599
BsmAI	GTCTC	1 cut(s)	470
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	5 cut(s)	124, 148, 603, 767, 808
Bso31I	GGTCTC	1 cut(s)	470
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	18, 276, 847
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	5 cut(s)	124, 148, 603, 767, 808
BspCNI	CTCAG	3 cut(s)	164, 203, 592
BspLI	GGNNCC	4 cut(s)	147, 148, 321, 793
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	855
BspT107I	GGYRCC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	289, 643
BssECI	CCNNGG	2 cut(s)	143, 534
BssMI	GATC	3 cut(s)	18, 276, 847
Bst2UI	CCWGG	2 cut(s)	535, 654
Bst4CI	ACNGT	3 cut(s)	247, 358, 681
Bst6I	CTCTTC	2 cut(s)	115, 480
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	4 cut(s)	151, 190, 579, 622
BstEII	GGTNACC	1 cut(s)	485
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	407, 588
BstKTI	GATC	3 cut(s)	21, 279, 850
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	3 cut(s)	18, 276, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 518
BstNI	CCWGG	2 cut(s)	535, 654
BstNSI	RCATGY	2 cut(s)	187, 549
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	6 cut(s)	142, 200, 533, 652, 767, 808
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	202, 496
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	5 cut(s)	124, 148, 603, 767, 808
BtsCI	GGATG	2 cut(s)	407, 588
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	4 cut(s)	146, 147, 656, 807
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	5 cut(s)	184, 314, 416, 424, 546
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	4 cut(s)	151, 190, 579, 622
DpnI	GATC	3 cut(s)	20, 278, 849
DpnII	GATC	3 cut(s)	18, 276, 847
DraI	TTTAAA	1 cut(s)	741
Eam1104I	CTCTTC	2 cut(s)	115, 480
EarI	CTCTTC	2 cut(s)	115, 480
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	653, 774
Eco91I	GGTNACC	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoO109I	RGGNCCY	2 cut(s)	146, 147
EcoO65I	GGTNACC	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	533, 652
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	5 cut(s)	187, 317, 419, 427, 549
FatI	CATG	5 cut(s)	183, 313, 415, 423, 545
FauNDI	CATATG	2 cut(s)	460, 855
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	216, 510
FokI	GGATG	2 cut(s)	414, 575
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	216, 510
FspBI	CTAG	2 cut(s)	60, 491
GluI	GCNGC	2 cut(s)	216, 510
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	5 cut(s)	124, 148, 603, 767, 808
HapII	CCGG	5 cut(s)	143, 160, 201, 768, 810
Hin1II	CATG	5 cut(s)	187, 317, 419, 427, 549
HinfI	GANTC	6 cut(s)	72, 163, 472, 503, 662, 707
HpaII	CCGG	5 cut(s)	143, 160, 201, 768, 810
HphI	GGTGA	2 cut(s)	561, 642
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	3 cut(s)	173, 670, 826
Hpy188III	TCNNGA	3 cut(s)	469, 659, 864
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	5 cut(s)	88, 231, 509, 757, 831
HpyCH4III	ACNGT	3 cut(s)	247, 358, 681
HpyCH4V	TGCA	7 cut(s)	305, 354, 438, 512, 551, 686, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 518
HpyF3I	CTNAG	4 cut(s)	151, 190, 579, 622
Hsp92II	CATG	5 cut(s)	187, 317, 419, 427, 549
KpnI	GGTACC	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	18, 276, 847
LmnI	GCTCC	2 cut(s)	173, 518
Lsp1109I	GCAGC	2 cut(s)	202, 496
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	2 cut(s)	60, 491
MaeIII	GTNAC	3 cut(s)	362, 485, 733
MalI	GATC	3 cut(s)	20, 278, 849
MboI	GATC	3 cut(s)	18, 276, 847
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	6 cut(s)	130, 280, 495, 561, 615, 743
MlyI	GAGTC	3 cut(s)	66, 157, 466
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	6 cut(s)	160, 199, 310, 325, 435, 603
MseI	TTAA	5 cut(s)	45, 740, 777, 798, 831
MslI	CAYNNNNRTG	1 cut(s)	670
MspA1I	CMGCKG	2 cut(s)	215, 509
MspI	CCGG	5 cut(s)	143, 160, 201, 768, 810
MspR9I	CCNGG	6 cut(s)	144, 202, 535, 654, 769, 810
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	2 cut(s)	535, 654
MwoI	GCNNNNNNNGC	2 cut(s)	294, 518
NciI	CCSGG	4 cut(s)	144, 202, 769, 810
NdeI	CATATG	2 cut(s)	460, 855
NdeII	GATC	3 cut(s)	18, 276, 847
NlaIII	CATG	5 cut(s)	187, 317, 419, 427, 549
NlaIV	GGNNCC	4 cut(s)	147, 148, 321, 793
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	2 cut(s)	187, 549
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PctI	GAATGC	1 cut(s)	677
PfeI	GAWTC	3 cut(s)	503, 662, 707
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	2 cut(s)	217, 511
PleI	GAGTC	3 cut(s)	66, 157, 466
PpsI	GAGTC	3 cut(s)	66, 157, 466
PshBI	ATTAAT	2 cut(s)	798, 831
Psp6I	CCWGG	2 cut(s)	533, 652
PspEI	GGTNACC	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	2 cut(s)	533, 652
PspN4I	GGNNCC	4 cut(s)	147, 148, 321, 793
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	4 cut(s)	146, 147, 656, 807
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	215, 509
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	670
SaqAI	TTAA	5 cut(s)	45, 740, 777, 798, 831
SatI	GCNGC	2 cut(s)	216, 510
Sau3AI	GATC	3 cut(s)	18, 276, 847
Sau96I	GGNCC	4 cut(s)	146, 147, 656, 807
SchI	GAGTC	3 cut(s)	66, 157, 466
ScrFI	CCNGG	6 cut(s)	144, 202, 535, 654, 769, 810
SduI	GDGCHC	1 cut(s)	150
SexAI	ACCWGGT	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	670
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	6 cut(s)	130, 280, 495, 561, 615, 743
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	2 cut(s)	60, 491
StyD4I	CCNGG	6 cut(s)	142, 200, 533, 652, 767, 808
TaaI	ACNGT	3 cut(s)	247, 358, 681
TasI	AATT	6 cut(s)	130, 280, 495, 561, 615, 743
TfiI	GAWTC	3 cut(s)	503, 662, 707
Tru1I	TTAA	5 cut(s)	45, 740, 777, 798, 831
Tru9I	TTAA	5 cut(s)	45, 740, 777, 798, 831
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	215, 509
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	21, 70, 225
TspRI	CASTG	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	2 cut(s)	798, 831
XagI	CCTNNNNNAGG	1 cut(s)	597
XceI	RCATGY	2 cut(s)	187, 549
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 296
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	2 cut(s)	60, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.