Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0016137

Physical Location & Seq

Genomic Coordinates Reverse (-)

6502004 .. 6506153

Gene Structure 4150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1056700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCTAAAGAACAGACAGATCTTGGGTTGTTCATCAGGCTTCGTTTCTCATCGCTGGAAGCCATATTCTACTACAAGTGGTAGCCTCTCCTTCCTTTCTATCTCCACCTGCTCCAACCCATCATTATCTTATTCCTTTTCTTCTTCGTCGTCAACGTTATTGCCCACAACTACCACCACTTGGTTGTCTTCCACTCACCGCCCTCGTTTTGGAGCTTTCAGCATGTCCTCAGCTCCTTCTGGGTCCAACCCAGATGGCCCTTCGTCTTCAGTTGCGGTTCAGTCTGCTGGCAATGCTCATAAGATTAATTTCTGCCAGTCGTGTGGTGGTCCAACAAAGCATGAGATACCCGATGGTGAGGAGAAGATAAGAGCAATATGCACAGTTTGTGAGAGGATTGCCTATGAGAACCCAAAAATGGTTGTAGGTTGTCTGATTGAGCATGATAACAAGGTCCTACTTTGCAAAAGGAAGATTCAACCATCATATGGCCTTTGGACTCTTCCCGCAGGTTACATGGAAATTGGGGAATCAGCTGCAGAAGGAGCCATCAGGGAAACTTGGGAAGAAGCATGCGCAGAAGTGGAAGTGGTGTCACCTTTTTCTCAATTGGACATCCCATTAATTGGCCAGACTTATGTAATTTTCTTAGCAAGGCTCAAGACACCCCACTTTTCACCAGGTCCAGAATCATCAGAATGCCAGCTTTTTGCACTTGATGAGATACCTTTTGATTCTCTGTCATTCTCGTCAATGGTTGTTACCTTAAAATTGTATATTGAAGACGTAAAGGCCGGAAAGCTTAATTTCCACTATGGTACCATTAATAAAAGGCCCGGCACAAGTCCTTCTGACATTCATGCGTATACTTTAGAATATCATCTACAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004551 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0034641 GO:0042726 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047884 GO:0050896 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00740 ko01100 map00230 map00740 map01100

Pfam Domains

Protein Families

NUDIX Nudix_N_2

Protein Analysis

298

Amino Acids

32.41

Weight (kDa)

6.31

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Nudix	PF14803	103 - 136	4.4e-13	Nudix N-terminal
NUDIX	PF00293	140 - 242	2.1e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42070 AT2G42070
fragaria_vesca	FvH4_6g22180
malus_domestica	MD12G1056700.v1.1 MD14G1055000.v1.1
prunus_persica	Prupe.7G077500_v2.0.a1 Prupe.7G077500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479531
rosa_laevigata	RLG00000023561
rosa_multiflora	Rmu_sc0004732.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402160
rosa_rugosa	Rorug03G0176300
rosa_samantha	Rh3AG227100 Rh3BG260300
rosa_wichuraiana	Rw3G020290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	116
Acc16I	TGCGCA	1 cut(s)	577
Acc36I	ACCTGC	2 cut(s)	116, 500
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	818
AccB7I	CCANNNNNTGG	3 cut(s)	180, 488, 626
AccI	GTMKAC	1 cut(s)	866
AciI	CCGC	3 cut(s)	199, 275, 507
AclI	AACGTT	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	820
AfiI	CCNNNNNNNGG	5 cut(s)	180, 209, 418, 488, 626
AgsI	TTSAA	2 cut(s)	479, 782
AjnI	CCWGG	1 cut(s)	679
AluBI	AGCT	5 cut(s)	215, 233, 536, 706, 802
AluI	AGCT	5 cut(s)	215, 233, 536, 706, 802
AoxI	GGCC	5 cut(s)	256, 490, 628, 792, 833
ApeKI	GCWGC	1 cut(s)	536
AseI	ATTAAT	3 cut(s)	306, 623, 825
Asp718I	GGTACC	1 cut(s)	818
AspLEI	GCGC	1 cut(s)	578
AspS9I	GGNCC	6 cut(s)	243, 257, 329, 454, 683, 834
AsuC2I	CCSGG	1 cut(s)	837
AsuHPI	GGTGA	4 cut(s)	188, 368, 588, 669
AvaII	GGWCC	4 cut(s)	243, 329, 454, 683
BaeI	ACNNNNGTAYC	2 cut(s)	802, 835
BalI	TGGCCA	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	818
BbsI	GAAGAC	3 cut(s)	180, 258, 789
BbvCI	CCTCAGC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	5 cut(s)	127, 248, 347, 490, 557
BciT130I	CCWGG	1 cut(s)	681
BcnI	CCSGG	1 cut(s)	837
BfmI	CTRYAG	2 cut(s)	537, 884
BfuAI	ACCTGC	2 cut(s)	116, 500
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
Bme1390I	CCNGG	2 cut(s)	681, 837
Bme18I	GGWCC	4 cut(s)	243, 329, 454, 683
BmgT120I	GGNCC	6 cut(s)	243, 257, 329, 454, 683, 834
BmiI	GGNNCC	3 cut(s)	244, 547, 820
BmrFI	CCNGG	2 cut(s)	681, 837
BpiI	GAAGAC	3 cut(s)	180, 258, 789
Bpu10I	CCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	5 cut(s)	180, 209, 418, 488, 626
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	681
BseGI	GGATG	1 cut(s)	615
BseLI	CCNNNNNNNGG	5 cut(s)	180, 209, 418, 488, 626
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	523
BshFI	GGCC	5 cut(s)	258, 492, 630, 794, 835
BshNI	GGYRCC	1 cut(s)	818
BsiSI	CCGG	2 cut(s)	795, 837
BslI	CCNNNNNNNGG	5 cut(s)	180, 209, 418, 488, 626
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	5 cut(s)	258, 492, 630, 794, 835
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	199, 275, 507
BspANI	GGCC	5 cut(s)	258, 492, 630, 794, 835
BspCNI	CTCAG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	890
BspLI	GGNNCC	3 cut(s)	244, 547, 820
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	2 cut(s)	116, 500
BspT107I	GGYRCC	1 cut(s)	818
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	18
BssNAI	GTATAC	1 cut(s)	867
Bst1107I	GTATAC	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	2 cut(s)	385, 888
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	289, 574, 704
BstDEI	CTNAG	2 cut(s)	229, 649
BstF5I	GGATG	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	578
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 545
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	2 cut(s)	226, 576
BstSCI	CCNGG	2 cut(s)	679, 835
BstSFI	CTRYAG	2 cut(s)	537, 884
BstV1I	GCAGC	1 cut(s)	523
BstV2I	GAAGAC	3 cut(s)	180, 258, 789
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	18
BstZ17I	GTATAC	1 cut(s)	867
BsuRI	GGCC	5 cut(s)	258, 492, 630, 794, 835
BtgZI	GCGATG	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	615
BveI	ACCTGC	2 cut(s)	116, 500
Cac8I	GCNNGC	3 cut(s)	289, 574, 704
CciI	TCATGA	1 cut(s)	890
CfoI	GCGC	1 cut(s)	578
Cfr13I	GGNCC	6 cut(s)	243, 257, 329, 454, 683, 834
CsiI	ACCWGGT	1 cut(s)	679
Csp6I	GTAC	1 cut(s)	819
CviAII	CATG	7 cut(s)	223, 341, 443, 517, 573, 860, 891
CviQI	GTAC	1 cut(s)	819
DdeI	CTNAG	2 cut(s)	229, 649
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco47I	GGWCC	4 cut(s)	243, 329, 454, 683
Eco57I	CTGAAG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	679
FaeI	CATG	7 cut(s)	226, 344, 446, 520, 576, 863, 894
FatI	CATG	7 cut(s)	222, 340, 442, 516, 572, 859, 890
FauI	CCCGC	1 cut(s)	514
FauNDI	CATATG	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	866
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	537
FspI	TGCGCA	1 cut(s)	577
GlaI	GCGC	1 cut(s)	577
GluI	GCNGC	1 cut(s)	537
HaeIII	GGCC	5 cut(s)	258, 492, 630, 794, 835
HapII	CCGG	2 cut(s)	795, 837
HhaI	GCGC	1 cut(s)	578
Hin1II	CATG	7 cut(s)	226, 344, 446, 520, 576, 863, 894
Hin6I	GCGC	1 cut(s)	576
HinP1I	GCGC	1 cut(s)	576
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	5 cut(s)	475, 499, 530, 689, 734
HpaII	CCGG	2 cut(s)	795, 837
HphI	GGTGA	4 cut(s)	188, 368, 588, 669
Hpy166II	GTNNAC	2 cut(s)	153, 867
Hpy188I	TCNGA	3 cut(s)	435, 697, 853
Hpy188III	TCNNGA	3 cut(s)	661, 686, 891
Hpy8I	GTNNAC	2 cut(s)	153, 867
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	5 cut(s)	100, 246, 270, 536, 858
HpyCH4III	ACNGT	2 cut(s)	385, 888
HpyCH4IV	ACGT	2 cut(s)	155, 786
HpyCH4V	TGCA	4 cut(s)	381, 465, 539, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 545
HpyF3I	CTNAG	2 cut(s)	229, 649
HpySE526I	ACGT	2 cut(s)	155, 786
Hsp92II	CATG	7 cut(s)	226, 344, 446, 520, 576, 863, 894
HspAI	GCGC	1 cut(s)	576
KpnI	GGTACC	1 cut(s)	822
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	4 cut(s)	116, 212, 238, 545
Lsp1109I	GCAGC	1 cut(s)	523
MabI	ACCWGGT	1 cut(s)	679
MaeII	ACGT	2 cut(s)	155, 786
MaeIII	GTNAC	3 cut(s)	512, 594, 760
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	9 cut(s)	132, 135, 180, 258, 376, 484, 494, 578, 794
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	7 cut(s)	307, 522, 608, 624, 642, 770, 805
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	3 cut(s)	138, 270, 356
MnlI	CCTC	5 cut(s)	95, 213, 238, 352, 387
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	5 cut(s)	306, 623, 767, 804, 825
MslI	CAYNNNNRTG	1 cut(s)	697
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	795, 837
MspR9I	CCNGG	2 cut(s)	681, 837
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	2 cut(s)	293, 545
NciI	CCSGG	1 cut(s)	837
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	7 cut(s)	226, 344, 446, 520, 576, 863, 894
NlaIV	GGNNCC	3 cut(s)	244, 547, 820
NmuCI	GTSAC	1 cut(s)	594
NsbI	TGCGCA	1 cut(s)	577
NspI	RCATGY	2 cut(s)	226, 576
PaeI	GCATGC	1 cut(s)	576
PagI	TCATGA	1 cut(s)	890
PaqCI	CACCTGC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PctI	GAATGC	1 cut(s)	704
PfeI	GAWTC	4 cut(s)	475, 530, 689, 734
PflMI	CCANNNNNTGG	3 cut(s)	180, 488, 626
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PpuMI	RGGWCCY	1 cut(s)	454
PshBI	ATTAAT	3 cut(s)	306, 623, 825
Psp1406I	AACGTT	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	3 cut(s)	244, 547, 820
PspPI	GGNCC	6 cut(s)	243, 257, 329, 454, 683, 834
PspPPI	RGGWCCY	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	820
RsaNI	GTAC	1 cut(s)	819
RseI	CAYNNNNRTG	1 cut(s)	697
SaqAI	TTAA	5 cut(s)	306, 623, 767, 804, 825
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	6 cut(s)	243, 257, 329, 454, 683, 834
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	681, 837
SexAI	ACCWGGT	1 cut(s)	679
SfcI	CTRYAG	2 cut(s)	537, 884
SinI	GGWCC	4 cut(s)	243, 329, 454, 683
SmiMI	CAYNNNNRTG	1 cut(s)	697
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SphI	GCATGC	1 cut(s)	576
Sse9I	AATT	7 cut(s)	307, 522, 608, 624, 642, 770, 805
SsiI	CCGC	3 cut(s)	199, 275, 507
StyD4I	CCNGG	2 cut(s)	679, 835
TaaI	ACNGT	2 cut(s)	385, 888
TaiI	ACGT	2 cut(s)	158, 789
TasI	AATT	7 cut(s)	307, 522, 608, 624, 642, 770, 805
TfiI	GAWTC	4 cut(s)	475, 530, 689, 734
Tru1I	TTAA	5 cut(s)	306, 623, 767, 804, 825
Tru9I	TTAA	5 cut(s)	306, 623, 767, 804, 825
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	2 cut(s)	21, 848
Van91I	CCANNNNNTGG	3 cut(s)	180, 488, 626
VpaK11BI	GGWCC	4 cut(s)	243, 329, 454, 683
VspI	ATTAAT	3 cut(s)	306, 623, 825
XceI	RCATGY	2 cut(s)	226, 576
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.