AT2G42110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014496
Physical Location & Seq
Reverse (-)
17562030 .. 17562947
918 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42110.1

Sequence Viewer

Length: 414 bp
ATGGATCTTGTTGTTATCACAGAGACTACTATTCCGACGAAAATCACTCACGTGAACAAGAAATCCTCCGACGAATTGCTCCGTAAGTTCGCCGATCCTGACGACGTCGACGAGTCGTCAAAGTCAACGAAACGCCGGAAGAAATCAGCTAAGAGTTCTTCTCGAGAGAAGGGCGTTGACATCGAAAGTAACACTAGTGGCTTAGTGGAGAGGAAACGGCTCTTGCTTGCCCCGGCGAGTAAACGGAGATCTCTGTTTATCCGGCAGCTTGCTTCTGGAAAATCACATCTCAGGAACAAGTCTCTCGTCAGAACCATCGGCAAGACATGGCGTAAAACAATGGAAGGAGCTTCAAGAGTTTTCATCGAGAAGCATTATAACAGACACAGGCGTCTCACCAACGACGTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.69

Weight (kDa)

10.73

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42110
fragaria_vesca FvH4_6g22320
malus_domestica MD12G1057100.v1.1 MD14G1057700.v1.1
prunus_persica Prupe.7G077000_v2.0.a1
pyrus_communis pycom12g05100 pycom14g04680
rosa_chinensis RchiOBHm_Chr3g0479681
rosa_laevigata RLG00000023548
rosa_multiflora Rmu_sc0003755.1_g000005
rosa_roxburghii Rroxscaffold_6G00402070
rosa_rugosa Rorug03G0177400
rosa_samantha Rh3AG228100 Rh3BG261300 Rh3CG258400 Rh3DG254600
rosa_wichuraiana Rw3G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AasI GACNNNNNNGTC 1 cut(s) 390
AatII GACGTC 2 cut(s) 108, 408
AccI GTMKAC 1 cut(s) 108
AclWI GGATC 2 cut(s) 12, 89
AcvI CACGTG 1 cut(s) 52
AcyI GRCGYC 3 cut(s) 105, 391, 405
AgsI TTSAA 1 cut(s) 354
AhdI GACNNNNNGTC 1 cut(s) 115
AhlI ACTAGT 1 cut(s) 194
AleI CACNNNNGTG 1 cut(s) 50
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 3 cut(s) 149, 268, 350
AluI AGCT 3 cut(s) 149, 268, 350
Alw26I GTCTC 3 cut(s) 17, 306, 398
AlwI GGATC 2 cut(s) 12, 89
Ama87I CYCGRG 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 162
BbrPI CACGTG 1 cut(s) 52
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 233
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 17, 306, 398
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 1 cut(s) 195
BglII AGATCT 1 cut(s) 248
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 233
BmeRI GACNNNNNGTC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 145, 177
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 3 cut(s) 105, 391, 405
BsaJI CCNNGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 136, 233, 262
BsmAI GTCTC 3 cut(s) 17, 306, 398
BsmBI CGTCTC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 162
Bsp143I GATC 3 cut(s) 4, 94, 248
BspCNI CTCAG 1 cut(s) 303
BspPI GGATC 2 cut(s) 12, 89
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 3 cut(s) 4, 94, 248
BssNI GRCGYC 3 cut(s) 105, 391, 405
BstACI GRCGYC 3 cut(s) 105, 391, 405
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 228, 270
BstDEI CTNAG 3 cut(s) 150, 202, 290
BstKTI GATC 3 cut(s) 7, 97, 251
BstMAI GTCTC 3 cut(s) 17, 306, 398
BstMBI GATC 3 cut(s) 4, 94, 248
BstSCI CCNGG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 2 cut(s) 4, 248
BstYI RGATCY 2 cut(s) 4, 248
Cac8I GCNNGC 2 cut(s) 228, 270
CseI GACGC 1 cut(s) 380
CviAII CATG 1 cut(s) 327
CviJI RGCY 5 cut(s) 149, 201, 220, 268, 350
CviKI_1 RGCY 5 cut(s) 149, 201, 220, 268, 350
DdeI CTNAG 3 cut(s) 150, 202, 290
DpnI GATC 3 cut(s) 6, 96, 250
DpnII GATC 3 cut(s) 4, 94, 248
DrdI GACNNNNNNGTC 1 cut(s) 390
DriI GACNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 390
Eam1105I GACNNNNNGTC 1 cut(s) 115
Eco72I CACGTG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 1 cut(s) 330
FaiI YATR 2 cut(s) 328, 378
FatI CATG 1 cut(s) 326
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 1 cut(s) 195
GluI GCNGC 1 cut(s) 266
HapII CCGG 3 cut(s) 136, 233, 262
HgaI GACGC 1 cut(s) 380
Hin1I GRCGYC 3 cut(s) 105, 391, 405
Hin1II CATG 1 cut(s) 330
HincII GTYRAC 3 cut(s) 109, 126, 178
HindII GTYRAC 3 cut(s) 109, 126, 178
HinfI GANTC 1 cut(s) 113
HpaII CCGG 3 cut(s) 136, 233, 262
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 5 cut(s) 55, 109, 126, 178, 242
Hpy188I TCNGA 3 cut(s) 36, 70, 311
Hpy188III TCNNGA 7 cut(s) 98, 162, 164, 276, 292, 354, 367
Hpy8I GTNNAC 5 cut(s) 55, 109, 126, 178, 242
Hpy99I CGWCG 7 cut(s) 40, 74, 107, 110, 113, 407, 410
HpyAV CCTTC 2 cut(s) 163, 338
HpyCH4IV ACGT 3 cut(s) 51, 105, 405
HpyF3I CTNAG 3 cut(s) 150, 202, 290
HpySE526I ACGT 3 cut(s) 51, 105, 405
Hsp92I GRCGYC 3 cut(s) 105, 391, 405
Hsp92II CATG 1 cut(s) 330
Kzo9I GATC 3 cut(s) 4, 94, 248
LmnI GCTCC 2 cut(s) 84, 347
LpnPI CCDG 7 cut(s) 111, 149, 246, 261, 275, 277, 373
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 1 cut(s) 195
MaeII ACGT 3 cut(s) 51, 105, 405
MaeIII GTNAC 1 cut(s) 188
MalI GATC 3 cut(s) 6, 96, 250
MboI GATC 3 cut(s) 4, 94, 248
MboII GAAGA 2 cut(s) 150, 151
MflI RGATCY 2 cut(s) 4, 248
MluCI AATT 1 cut(s) 74
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 2 cut(s) 59, 93
MnlI CCTC 2 cut(s) 76, 204
MseI TTAA 1 cut(s) 412
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 3 cut(s) 136, 233, 262
MspR9I CCNGG 1 cut(s) 233
NciI CCSGG 1 cut(s) 233
NdeII GATC 3 cut(s) 4, 94, 248
NlaIII CATG 1 cut(s) 330
OliI CACNNNNGTG 1 cut(s) 50
PaeR7I CTCGAG 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 121
PmaCI CACGTG 1 cut(s) 52
PmlI CACGTG 1 cut(s) 52
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 52
PsiI TTATAA 1 cut(s) 378
PspCI CACGTG 1 cut(s) 52
PsuI RGATCY 2 cut(s) 4, 248
PsyI GACNNNGTC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 50
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 3 cut(s) 4, 94, 248
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 233
SetI ASST 6 cut(s) 54, 108, 151, 270, 352, 408
Sfr274I CTCGAG 1 cut(s) 162
SgrDI CGTCGACG 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 1 cut(s) 74
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 231
TaiI ACGT 3 cut(s) 54, 108, 408
TaqI TCGA 4 cut(s) 108, 163, 183, 366
TasI AATT 1 cut(s) 74
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 352
TspGWI ACGGA 2 cut(s) 71, 259
Tth111I GACNNNGTC 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 195
ZraI GACGTC 2 cut(s) 106, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.