Rroxscaffold_6G00402070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014496
Physical Location & Seq
Forward (+)
24461130 .. 24462042
913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402070.1

Sequence Viewer

Length: 420 bp
ATGGACCCTCCTACTTCTATTCCTACTTCTGCTACTGCTGCTGCCACTGCCTCTGCTAGCGTTCAACATGTGACCAAGAGGTCTTCAGATAAGCTGCTTAGGAAATTTGCTGATTCCTGCAATGAGGCCGAGGCCTCAGCGAAGAAGAAGGCGATCAGGGCGCTTTCGAAGCAAAGGAAAAGAAGCCGGAAAAGCGGTGAGTTTGATCAGAGTGAGAGTCCATCAAATGGCAAGAGTAGCAGCTTAGTGGAGAGGAGGTCACTGCTTCCTGTTGTTGCTGGGACTAAAAACAAGGGATTGCTGCTTAGGCAGCTTGGGGTTCATGGCAGGTCAAGGGATATCAGGAACAAGTCCCTCTTTGGTACCATTCACAAGTTTAGGTCTCAGGAAACAGATGCAAATGGTAACCATACTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.04

Weight (kDa)

10.83

Isoelectric Point (pI)

66.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42110
fragaria_vesca FvH4_6g22320
malus_domestica MD12G1057100.v1.1 MD14G1057700.v1.1
prunus_persica Prupe.7G077000_v2.0.a1
pyrus_communis pycom12g05100 pycom14g04680
rosa_chinensis RchiOBHm_Chr3g0479681
rosa_laevigata RLG00000023548
rosa_multiflora Rmu_sc0003755.1_g000005
rosa_roxburghii Rroxscaffold_6G00402070
rosa_rugosa Rorug03G0177400
rosa_samantha Rh3AG228100 Rh3BG261300 Rh3CG258400 Rh3DG254600
rosa_wichuraiana Rw3G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 318
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 227
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 3 cut(s) 94, 243, 313
AluI AGCT 3 cut(s) 94, 243, 313
Alw26I GTCTC 1 cut(s) 387
AoxI GGCC 2 cut(s) 126, 132
ApeKI GCWGC 6 cut(s) 38, 41, 94, 240, 301, 310
ApoI RAATTY 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 209
AsuII TTCGAA 1 cut(s) 167
AsuNHI GCTAGC 1 cut(s) 56
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 136
BbvI GCAGC 6 cut(s) 25, 28, 81, 252, 288, 322
BccI CCATC 1 cut(s) 229
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 318
BisI GCNGC 6 cut(s) 39, 42, 95, 241, 302, 311
BlsI GCNGC 6 cut(s) 40, 43, 96, 242, 303, 312
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 364
BmsI GCATC 1 cut(s) 385
BmtI GCTAGC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 75
Bpu10I CCTNAGC 3 cut(s) 98, 136, 305
Bpu14I TTCGAA 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 150, 398
BseRI GAGGAG 1 cut(s) 268
BseXI GCAGC 6 cut(s) 25, 28, 81, 252, 288, 322
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 2 cut(s) 128, 134
BshNI GGYRCC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 295, 337
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 2 cut(s) 295, 337
BsnI GGCC 2 cut(s) 128, 134
Bso31I GGTCTC 1 cut(s) 387
Bsp119I TTCGAA 1 cut(s) 167
Bsp143I GATC 2 cut(s) 153, 205
BspACI CCGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 128, 134
BspCNI CTCAG 2 cut(s) 149, 397
BspLI GGNNCC 2 cut(s) 6, 364
BspMI ACCTGC 1 cut(s) 318
BspOI GCTAGC 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 153, 205
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 5 cut(s) 98, 136, 244, 305, 384
BstEII GGTNACC 1 cut(s) 404
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 2 cut(s) 156, 208
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 2 cut(s) 153, 205
BstMWI GCNNNNNNNGC 8 cut(s) 38, 47, 158, 169, 192, 237, 307, 310
BstNSI RCATGY 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 404
BstV1I GCAGC 6 cut(s) 25, 28, 81, 252, 288, 322
BstV2I GAAGAC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 128, 134
BtsI GCAGTG 2 cut(s) 45, 260
BtsIMutI CAGTG 2 cut(s) 45, 260
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 363
CviAII CATG 2 cut(s) 68, 323
CviJI RGCY 6 cut(s) 94, 128, 134, 186, 243, 313
CviKI_1 RGCY 6 cut(s) 94, 128, 134, 186, 243, 313
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 5 cut(s) 98, 136, 244, 305, 384
DpnI GATC 2 cut(s) 155, 207
DpnII GATC 2 cut(s) 153, 205
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 387
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 404
EcoO65I GGTNACC 1 cut(s) 404
EcoRV GATATC 1 cut(s) 340
FaeI CATG 2 cut(s) 71, 326
FaiI YATR 3 cut(s) 69, 324, 411
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 2 cut(s) 295, 337
FatI CATG 2 cut(s) 67, 322
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 6 cut(s) 39, 42, 95, 241, 302, 311
Fsp4HI GCNGC 6 cut(s) 39, 42, 95, 241, 302, 311
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 162
GluI GCNGC 6 cut(s) 39, 42, 95, 241, 302, 311
GsaI CCCAGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 128, 134
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 71, 326
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 2 cut(s) 113, 217
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 88, 210
Hpy188III TCNNGA 2 cut(s) 343, 386
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 120, 398
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 47, 158, 169, 192, 237, 307, 310
HpyF3I CTNAG 5 cut(s) 98, 136, 244, 305, 384
Hsp92II CATG 2 cut(s) 71, 326
HspAI GCGC 1 cut(s) 161
KpnI GGTACC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 153, 205
LpnPI CCDG 8 cut(s) 130, 142, 200, 264, 282, 313, 328, 371
Lsp1109I GCAGC 6 cut(s) 25, 28, 81, 252, 288, 322
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 70, 258, 404
MalI GATC 2 cut(s) 155, 207
MboI GATC 2 cut(s) 153, 205
MboII GAAGA 3 cut(s) 75, 154, 157
MluCI AATT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 9 cut(s) 18, 61, 72, 118, 124, 145, 246, 249, 365
MseI TTAA 1 cut(s) 418
MspI CCGG 1 cut(s) 187
MwoI GCNNNNNNNGC 8 cut(s) 38, 47, 158, 169, 192, 237, 307, 310
NdeII GATC 2 cut(s) 153, 205
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 71, 326
NlaIV GGNNCC 2 cut(s) 6, 364
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 2 cut(s) 70, 258
NspI RCATGY 1 cut(s) 71
NspV TTCGAA 1 cut(s) 167
PceI AGGCCT 1 cut(s) 134
PciI ACATGT 1 cut(s) 67
PfeI GAWTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 6 cut(s) 40, 43, 96, 242, 303, 312
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PscI ACATGT 1 cut(s) 67
PspEI GGTNACC 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 6, 364
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 6 cut(s) 39, 42, 95, 241, 302, 311
Sau3AI GATC 2 cut(s) 153, 205
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 226
SetI ASST 7 cut(s) 83, 96, 245, 260, 315, 332, 383
SfaNI GCATC 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 57
StuI AGGCCT 1 cut(s) 134
TaqI TCGA 1 cut(s) 167
TasI AATT 1 cut(s) 104
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TscAI CASTG 2 cut(s) 52, 267
TseFI GTSAC 2 cut(s) 70, 258
TseI GCWGC 6 cut(s) 38, 41, 94, 240, 301, 310
Tsp45I GTSAC 2 cut(s) 70, 258
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 2 cut(s) 52, 267
Van91I CCANNNNNTGG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 71
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.