Rmu_sc0003755.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003755.1
OG0014496
Physical Location & Seq
Reverse (-)
19224 .. 20781
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003755.1_g000005.1.cds

Sequence Viewer

Length: 576 bp
atggaccctcctacttctattcctacttctgttgctgctactgctactgctactgctactgctactgctactgcctctgctagtgttcaacatgtgaccaagaggtcttcagatcagctgctcaggaaatttgctgattcctgcaatgaggccgaggcctcagcgaggaagaaggcgatcagggagctttcgaagcaaaggaaaaaaagccggaaaagcggtgagtttgatcagagtgagagtccatcaaatggcaagagtagcagcttagtggagaggaggtcactgcttcctgttgttgctgggactaaaaacaagggattgctgctcaggcagcttggggttcatggcaggtcaagggatatcaggaacaagtcccttttcggtaccattcacaagctgagccaagcaaggccaccttgtgagtgtctcacagacctcatgtgtctcctcctcctcctttcccctttacaatcttctttcttggaaaacaacatcctcctacctctgcatttcctccattcatttcattcaatccccaaaacaaagacaaagctggatttgctttcttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.8

Weight (kDa)

10.12

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42110
fragaria_vesca FvH4_6g22320
malus_domestica MD12G1057100.v1.1 MD14G1057700.v1.1
prunus_persica Prupe.7G077000_v2.0.a1
pyrus_communis pycom12g05100 pycom14g04680
rosa_chinensis RchiOBHm_Chr3g0479681
rosa_laevigata RLG00000023548
rosa_multiflora Rmu_sc0003755.1_g000005
rosa_roxburghii Rroxscaffold_6G00402070
rosa_rugosa Rorug03G0177400
rosa_samantha Rh3AG228100 Rh3BG261300 Rh3CG258400 Rh3DG254600
rosa_wichuraiana Rw3G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 342
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 386
AccB7I CCANNNNNTGG 1 cut(s) 251
AciI CCGC 1 cut(s) 219
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 93
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 2 cut(s) 165, 251
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 2 cut(s) 89, 534
AluBI AGCT 6 cut(s) 118, 187, 267, 337, 400, 556
AluI AGCT 6 cut(s) 118, 187, 267, 337, 400, 556
Alw26I GTCTC 2 cut(s) 434, 452
AoxI GGCC 3 cut(s) 150, 156, 413
ApeKI GCWGC 5 cut(s) 35, 118, 264, 325, 334
ApoI RAATTY 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 160
BbvI GCAGC 5 cut(s) 22, 105, 276, 312, 346
BccI CCATC 1 cut(s) 253
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 434, 452
BfaI CTAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 5 cut(s) 36, 119, 265, 326, 335
BlpI GCTNAGC 1 cut(s) 401
BlsI GCNGC 5 cut(s) 37, 120, 266, 327, 336
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 388
BpiI GAAGAC 1 cut(s) 99
Bpu10I CCTNAGC 3 cut(s) 122, 160, 329
Bpu1102I GCTNAGC 1 cut(s) 401
Bpu14I TTCGAA 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 251
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 165, 251
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 4 cut(s) 136, 174, 343, 392
BseRI GAGGAG 4 cut(s) 292, 440, 443, 446
BseXI GCAGC 5 cut(s) 22, 105, 276, 312, 346
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 3 cut(s) 152, 158, 415
BshNI GGYRCC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 2 cut(s) 319, 361
BslI CCNNNNNNNGG 2 cut(s) 165, 251
BsmAI GTCTC 2 cut(s) 434, 452
BsmFI GGGAC 2 cut(s) 319, 361
BsnI GGCC 3 cut(s) 152, 158, 415
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 3 cut(s) 112, 177, 229
Bsp1720I GCTNAGC 1 cut(s) 401
BspACI CCGC 1 cut(s) 219
BspANI GGCC 3 cut(s) 152, 158, 415
BspCNI CTCAG 4 cut(s) 135, 173, 342, 393
BspLI GGNNCC 2 cut(s) 6, 388
BspMI ACCTGC 1 cut(s) 342
BspT104I TTCGAA 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 3 cut(s) 112, 177, 229
BstBI TTCGAA 1 cut(s) 191
BstDEI CTNAG 5 cut(s) 122, 160, 268, 329, 401
BstENI CCTNNNNNAGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 495
BstKTI GATC 3 cut(s) 115, 180, 232
BstMAI GTCTC 2 cut(s) 434, 452
BstMBI GATC 3 cut(s) 112, 177, 229
BstMWI GCNNNNNNNGC 7 cut(s) 41, 193, 216, 261, 331, 334, 562
BstNSI RCATGY 1 cut(s) 95
BstV1I GCAGC 5 cut(s) 22, 105, 276, 312, 346
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 3 cut(s) 152, 158, 415
BtsCI GGATG 1 cut(s) 495
BtsI GCAGTG 1 cut(s) 284
BtsIMutI CAGTG 1 cut(s) 284
BveI ACCTGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 387
CviAII CATG 3 cut(s) 92, 347, 442
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 5 cut(s) 122, 160, 268, 329, 401
DpnI GATC 3 cut(s) 114, 179, 231
DpnII GATC 3 cut(s) 112, 177, 229
DraIII CACNNNGTG 1 cut(s) 422
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 158
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoRV GATATC 1 cut(s) 364
FaeI CATG 3 cut(s) 95, 350, 445
FaiI YATR 3 cut(s) 93, 348, 443
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FaqI GGGAC 2 cut(s) 319, 361
FatI CATG 3 cut(s) 91, 346, 441
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 5 cut(s) 36, 119, 265, 326, 335
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 5 cut(s) 36, 119, 265, 326, 335
FspBI CTAG 1 cut(s) 81
GluI GCNGC 5 cut(s) 36, 119, 265, 326, 335
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 3 cut(s) 152, 158, 415
HapII CCGG 1 cut(s) 211
Hin1II CATG 3 cut(s) 95, 350, 445
HinfI GANTC 2 cut(s) 137, 241
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 112, 234
Hpy188III TCNNGA 3 cut(s) 124, 367, 573
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 144, 511
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 193, 216, 261, 331, 334, 562
HpyF3I CTNAG 5 cut(s) 122, 160, 268, 329, 401
Hsp92II CATG 3 cut(s) 95, 350, 445
KpnI GGTACC 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 112, 177, 229
LmnI GCTCC 1 cut(s) 184
Lsp1109I GCAGC 5 cut(s) 22, 105, 276, 312, 346
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 94, 282
MalI GATC 3 cut(s) 114, 179, 231
MboI GATC 3 cut(s) 112, 177, 229
MboII GAAGA 4 cut(s) 99, 181, 468, 561
MluCI AATT 1 cut(s) 128
MlyI GAGTC 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 211
MwoI GCNNNNNNNGC 7 cut(s) 41, 193, 216, 261, 331, 334, 562
NdeII GATC 3 cut(s) 112, 177, 229
NlaIII CATG 3 cut(s) 95, 350, 445
NlaIV GGNNCC 2 cut(s) 6, 388
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 2 cut(s) 94, 282
NspI RCATGY 1 cut(s) 95
NspV TTCGAA 1 cut(s) 191
PceI AGGCCT 1 cut(s) 158
PciI ACATGT 1 cut(s) 91
PfeI GAWTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 5 cut(s) 37, 120, 266, 327, 336
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PscI ACATGT 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 6, 388
PspPI GGNCC 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SatI GCNGC 5 cut(s) 36, 119, 265, 326, 335
Sau3AI GATC 3 cut(s) 112, 177, 229
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 250
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 128
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 1 cut(s) 219
SspMI CTAG 1 cut(s) 81
StuI AGGCCT 1 cut(s) 158
TaqI TCGA 1 cut(s) 191
TasI AATT 1 cut(s) 128
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 2 cut(s) 94, 282
TseI GCWGC 5 cut(s) 35, 118, 264, 325, 334
Tsp45I GTSAC 2 cut(s) 94, 282
TspDTI ATGAA 3 cut(s) 335, 513, 518
TspRI CASTG 1 cut(s) 291
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 163
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 95
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.