Rh3CG258400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0014496
Physical Location & Seq
Reverse (-)
25225889 .. 25227441
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG258400.1

Sequence Viewer

Length: 477 bp
ATGGACCCTCCTACTTCTGTTGCTGCTACTGCTACTGCTACTGCTACTGCCACTGCCACTGCCTCTGCTAGTGTTCAACATGTGACCAAGAGGTCTTCAGATGAGCTGCTCAGGAAATTTGCTGATTCCTGCAATGAGGCCGAGGCCTCAGCGAGGAAGAAGGCGATCAGGGAGCTTTCGAAGCAAAGGAAAAAAAGCCGGAAAAGTGGTGAGTTTGATCAGGGTGAGAGTCCATCAAATGGCAAGAGTAGCAGCTTAGTGGAGAGGAGGTCACTGCTTCCTGTTGTTGCTGGGACTAAAAACAAGGGATTGCTGCTTAGGCAGCTTGGGGTTCATGGCAGGTCAAGGGATATCAGGAACAAGTCCCTTTTTGGTACCATTCACAAGACTTGGAGGAGGACCATAGAAGGGGCTTCAAAGGTTTTCATGGAGAAGCATTACAATAGGCACAGGCGTTTGATAAATGACATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.47

Weight (kDa)

10.83

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42110
fragaria_vesca FvH4_6g22320
malus_domestica MD12G1057100.v1.1 MD14G1057700.v1.1
prunus_persica Prupe.7G077000_v2.0.a1
pyrus_communis pycom12g05100 pycom14g04680
rosa_chinensis RchiOBHm_Chr3g0479681
rosa_laevigata RLG00000023548
rosa_multiflora Rmu_sc0003755.1_g000005
rosa_roxburghii Rroxscaffold_6G00402070
rosa_rugosa Rorug03G0177400
rosa_samantha Rh3AG228100 Rh3BG261300 Rh3CG258400 Rh3DG254600
rosa_wichuraiana Rw3G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
Acc36I ACCTGC 1 cut(s) 330
Acc65I GGTACC 1 cut(s) 374
AccB1I GGYRCC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 239
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 3 cut(s) 153, 239, 408
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 77, 417
AluBI AGCT 4 cut(s) 106, 175, 255, 325
AluI AGCT 4 cut(s) 106, 175, 255, 325
AoxI GGCC 2 cut(s) 138, 144
ApeKI GCWGC 5 cut(s) 23, 106, 252, 313, 322
ApoI RAATTY 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 4, 399
AsuHPI GGTGA 2 cut(s) 221, 236
AsuII TTCGAA 1 cut(s) 179
AvaII GGWCC 2 cut(s) 4, 399
BanI GGYRCC 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 148
BbvI GCAGC 5 cut(s) 10, 93, 264, 300, 334
BccI CCATC 1 cut(s) 241
BclI TGATCA 1 cut(s) 217
BfaI CTAG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 5 cut(s) 24, 107, 253, 314, 323
BlsI GCNGC 5 cut(s) 25, 108, 254, 315, 324
Bme18I GGWCC 2 cut(s) 4, 399
BmgT120I GGNCC 2 cut(s) 4, 399
BmiI GGNNCC 2 cut(s) 6, 376
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 3 cut(s) 110, 148, 317
Bpu14I TTCGAA 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 239, 408
Bse3DI GCAATG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 153, 239, 408
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 124, 162
BseRI GAGGAG 2 cut(s) 280, 409
BseXI GCAGC 5 cut(s) 10, 93, 264, 300, 334
BseYI CCCAGC 1 cut(s) 290
BshFI GGCC 2 cut(s) 140, 146
BshNI GGYRCC 1 cut(s) 374
BsiSI CCGG 1 cut(s) 199
BslFI GGGAC 2 cut(s) 307, 349
BslI CCNNNNNNNGG 3 cut(s) 153, 239, 408
BsmFI GGGAC 2 cut(s) 307, 349
BsnI GGCC 2 cut(s) 140, 146
Bsp119I TTCGAA 1 cut(s) 179
Bsp143I GATC 2 cut(s) 165, 217
BspANI GGCC 2 cut(s) 140, 146
BspCNI CTCAG 2 cut(s) 123, 161
BspLI GGNNCC 2 cut(s) 6, 376
BspMI ACCTGC 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 165, 217
BstBI TTCGAA 1 cut(s) 179
BstDEI CTNAG 4 cut(s) 110, 148, 256, 317
BstENI CCTNNNNNAGG 1 cut(s) 151
BstKTI GATC 2 cut(s) 168, 220
BstMBI GATC 2 cut(s) 165, 217
BstMWI GCNNNNNNNGC 5 cut(s) 29, 181, 249, 319, 322
BstNSI RCATGY 1 cut(s) 83
BstV1I GCAGC 5 cut(s) 10, 93, 264, 300, 334
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 140, 146
BtsI GCAGTG 3 cut(s) 51, 57, 272
BtsIMutI CAGTG 3 cut(s) 51, 57, 272
BveI ACCTGC 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 4, 399
Csp6I GTAC 1 cut(s) 375
CviAII CATG 3 cut(s) 80, 335, 427
CviJI RGCY 8 cut(s) 106, 140, 146, 175, 198, 255, 325, 413
CviKI_1 RGCY 8 cut(s) 106, 140, 146, 175, 198, 255, 325, 413
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 4 cut(s) 110, 148, 256, 317
DpnI GATC 2 cut(s) 167, 219
DpnII GATC 2 cut(s) 165, 217
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
Eco147I AGGCCT 1 cut(s) 146
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 4, 399
Eco57I CTGAAG 1 cut(s) 81
EcoNI CCTNNNNNAGG 1 cut(s) 151
EcoRV GATATC 1 cut(s) 352
FaeI CATG 3 cut(s) 83, 338, 430
FaiI YATR 4 cut(s) 81, 336, 404, 428
FaqI GGGAC 2 cut(s) 307, 349
FatI CATG 3 cut(s) 79, 334, 426
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 5 cut(s) 24, 107, 253, 314, 323
Fsp4HI GCNGC 5 cut(s) 24, 107, 253, 314, 323
FspBI CTAG 1 cut(s) 69
GluI GCNGC 5 cut(s) 24, 107, 253, 314, 323
GsaI CCCAGC 1 cut(s) 294
HaeIII GGCC 2 cut(s) 140, 146
HapII CCGG 1 cut(s) 199
Hin1II CATG 3 cut(s) 83, 338, 430
HinfI GANTC 2 cut(s) 125, 229
HpaII CCGG 1 cut(s) 199
HphI GGTGA 2 cut(s) 221, 236
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 112, 355
HpyAV CCTTC 2 cut(s) 154, 401
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 181, 249, 319, 322
HpyF3I CTNAG 4 cut(s) 110, 148, 256, 317
Hsp92II CATG 3 cut(s) 83, 338, 430
KpnI GGTACC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 165, 217
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 5 cut(s) 10, 93, 264, 300, 334
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 82, 270
MalI GATC 2 cut(s) 167, 219
MboI GATC 2 cut(s) 165, 217
MboII GAAGA 2 cut(s) 87, 169
MluCI AATT 1 cut(s) 116
MlyI GAGTC 1 cut(s) 238
MspI CCGG 1 cut(s) 199
MwoI GCNNNNNNNGC 5 cut(s) 29, 181, 249, 319, 322
NdeII GATC 2 cut(s) 165, 217
NlaIII CATG 3 cut(s) 83, 338, 430
NlaIV GGNNCC 2 cut(s) 6, 376
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 82, 270
NspI RCATGY 1 cut(s) 83
NspV TTCGAA 1 cut(s) 179
PceI AGGCCT 1 cut(s) 146
PciI ACATGT 1 cut(s) 79
PfeI GAWTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 5 cut(s) 25, 108, 254, 315, 324
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PscI ACATGT 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 6, 376
PspPI GGNCC 2 cut(s) 4, 399
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SatI GCNGC 5 cut(s) 24, 107, 253, 314, 323
Sau3AI GATC 2 cut(s) 165, 217
Sau96I GGNCC 2 cut(s) 4, 399
SchI GAGTC 1 cut(s) 238
SetI ASST 8 cut(s) 95, 108, 177, 257, 272, 327, 344, 423
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 2 cut(s) 4, 399
Sse9I AATT 1 cut(s) 116
SseBI AGGCCT 1 cut(s) 146
SspMI CTAG 1 cut(s) 69
StuI AGGCCT 1 cut(s) 146
TaqI TCGA 1 cut(s) 179
TasI AATT 1 cut(s) 116
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 3 cut(s) 58, 64, 279
TseFI GTSAC 2 cut(s) 82, 270
TseI GCWGC 5 cut(s) 23, 106, 252, 313, 322
Tsp45I GTSAC 2 cut(s) 82, 270
TspDTI ATGAA 2 cut(s) 323, 415
TspRI CASTG 3 cut(s) 58, 64, 279
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 4, 399
XagI CCTNNNNNAGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 83
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.