Rh3AG228100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014496
Physical Location & Seq
Reverse (-)
23499780 .. 23501924
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG228100.1

Sequence Viewer

Length: 465 bp
ATGGACCCTCCTACTTCTATTCCTACTACTGCTACTGCCACTGCCACTGCCTCTGCTAGTGTTCAACATGTGACCAAGAGGTCTTCAGATGAGCTGCTCAGGAAATTTGCTGATTCCTGCAATGAGGCCGAGGCCTCAGCGAGGAAGAAGGCGATCAGGGAGCTTTCGAAGCAAAGGAAAAAAAGCCGGAAAAGCGGTGAGTTTGATCAGAGTGAGAGTGCATCAAATGGCAAGAGTAGCAGCTTAGTGGAGAGGAGGTCACTGCTTCCTGTTGTTGCTGGGACTAAAAACAAGGGATTGCTGCTTAGGCAGCTTGGGGTTCATGGCAGGTCAAGGGATATCAGGAACAAGTCCCTTTTTGGTACCATTCACAAGACTTGGAGGAGGACCATAGAAGGGGCTTCAAAGGTTTTCATGGAGAAGCATTACAATAGGCACAGGCGTTTGATAAATGACATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.2

Weight (kDa)

10.83

Isoelectric Point (pI)

61.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42110
fragaria_vesca FvH4_6g22320
malus_domestica MD12G1057100.v1.1 MD14G1057700.v1.1
prunus_persica Prupe.7G077000_v2.0.a1
pyrus_communis pycom12g05100 pycom14g04680
rosa_chinensis RchiOBHm_Chr3g0479681
rosa_laevigata RLG00000023548
rosa_multiflora Rmu_sc0003755.1_g000005
rosa_roxburghii Rroxscaffold_6G00402070
rosa_rugosa Rorug03G0177400
rosa_samantha Rh3AG228100 Rh3BG261300 Rh3CG258400 Rh3DG254600
rosa_wichuraiana Rw3G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 318
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 362
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 141, 396
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 2 cut(s) 65, 405
AluBI AGCT 4 cut(s) 94, 163, 243, 313
AluI AGCT 4 cut(s) 94, 163, 243, 313
AoxI GGCC 2 cut(s) 126, 132
ApeKI GCWGC 4 cut(s) 94, 240, 301, 310
ApoI RAATTY 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 4, 387
AsuHPI GGTGA 1 cut(s) 209
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 2 cut(s) 4, 387
BanI GGYRCC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 136
BbvI GCAGC 4 cut(s) 81, 252, 288, 322
BclI TGATCA 1 cut(s) 205
BfaI CTAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 318
BisI GCNGC 4 cut(s) 95, 241, 302, 311
BlsI GCNGC 4 cut(s) 96, 242, 303, 312
Bme18I GGWCC 2 cut(s) 4, 387
BmgT120I GGNCC 2 cut(s) 4, 387
BmiI GGNNCC 2 cut(s) 6, 364
BmsI GCATC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 75
Bpu10I CCTNAGC 3 cut(s) 98, 136, 305
Bpu14I TTCGAA 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 396
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 141, 396
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 112, 150
BseRI GAGGAG 2 cut(s) 268, 397
BseXI GCAGC 4 cut(s) 81, 252, 288, 322
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 2 cut(s) 128, 134
BshNI GGYRCC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 295, 337
BslI CCNNNNNNNGG 2 cut(s) 141, 396
BsmFI GGGAC 2 cut(s) 295, 337
BsnI GGCC 2 cut(s) 128, 134
Bsp119I TTCGAA 1 cut(s) 167
Bsp143I GATC 2 cut(s) 153, 205
BspACI CCGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 128, 134
BspCNI CTCAG 2 cut(s) 111, 149
BspLI GGNNCC 2 cut(s) 6, 364
BspMI ACCTGC 1 cut(s) 318
BspT104I TTCGAA 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 153, 205
BstBI TTCGAA 1 cut(s) 167
BstDEI CTNAG 4 cut(s) 98, 136, 244, 305
BstENI CCTNNNNNAGG 1 cut(s) 139
BstKTI GATC 2 cut(s) 156, 208
BstMBI GATC 2 cut(s) 153, 205
BstMWI GCNNNNNNNGC 5 cut(s) 169, 192, 237, 307, 310
BstNSI RCATGY 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 81, 252, 288, 322
BstV2I GAAGAC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 128, 134
BtsI GCAGTG 3 cut(s) 39, 45, 260
BtsIMutI CAGTG 3 cut(s) 39, 45, 260
BveI ACCTGC 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 4, 387
Csp6I GTAC 1 cut(s) 363
CviAII CATG 3 cut(s) 68, 323, 415
CviJI RGCY 8 cut(s) 94, 128, 134, 163, 186, 243, 313, 401
CviKI_1 RGCY 8 cut(s) 94, 128, 134, 163, 186, 243, 313, 401
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 4 cut(s) 98, 136, 244, 305
DpnI GATC 2 cut(s) 155, 207
DpnII GATC 2 cut(s) 153, 205
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 134
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 4, 387
Eco57I CTGAAG 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 139
EcoRV GATATC 1 cut(s) 340
FaeI CATG 3 cut(s) 71, 326, 418
FaiI YATR 4 cut(s) 69, 324, 392, 416
FaqI GGGAC 2 cut(s) 295, 337
FatI CATG 3 cut(s) 67, 322, 414
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 95, 241, 302, 311
Fsp4HI GCNGC 4 cut(s) 95, 241, 302, 311
FspBI CTAG 1 cut(s) 57
GluI GCNGC 4 cut(s) 95, 241, 302, 311
GsaI CCCAGC 1 cut(s) 282
HaeIII GGCC 2 cut(s) 128, 134
HapII CCGG 1 cut(s) 187
Hin1II CATG 3 cut(s) 71, 326, 418
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 88, 210
Hpy188III TCNNGA 2 cut(s) 100, 343
HpyAV CCTTC 2 cut(s) 142, 389
HpyCH4V TGCA 2 cut(s) 120, 221
HpyF10VI GCNNNNNNNGC 5 cut(s) 169, 192, 237, 307, 310
HpyF3I CTNAG 4 cut(s) 98, 136, 244, 305
Hsp92II CATG 3 cut(s) 71, 326, 418
KpnI GGTACC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 153, 205
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 9 cut(s) 85, 130, 142, 200, 264, 282, 313, 328, 424
Lsp1109I GCAGC 4 cut(s) 81, 252, 288, 322
LweI GCATC 1 cut(s) 230
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 70, 258
MalI GATC 2 cut(s) 155, 207
MboI GATC 2 cut(s) 153, 205
MboII GAAGA 2 cut(s) 75, 157
MluCI AATT 1 cut(s) 104
MspI CCGG 1 cut(s) 187
MwoI GCNNNNNNNGC 5 cut(s) 169, 192, 237, 307, 310
NdeII GATC 2 cut(s) 153, 205
NlaIII CATG 3 cut(s) 71, 326, 418
NlaIV GGNNCC 2 cut(s) 6, 364
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 2 cut(s) 70, 258
NspI RCATGY 1 cut(s) 71
NspV TTCGAA 1 cut(s) 167
PceI AGGCCT 1 cut(s) 134
PciI ACATGT 1 cut(s) 67
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 4 cut(s) 96, 242, 303, 312
PscI ACATGT 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 6, 364
PspPI GGNCC 2 cut(s) 4, 387
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SatI GCNGC 4 cut(s) 95, 241, 302, 311
Sau3AI GATC 2 cut(s) 153, 205
Sau96I GGNCC 2 cut(s) 4, 387
SetI ASST 8 cut(s) 83, 96, 165, 245, 260, 315, 332, 411
SfaNI GCATC 1 cut(s) 230
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 2 cut(s) 4, 387
Sse9I AATT 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 1 cut(s) 195
SspMI CTAG 1 cut(s) 57
StuI AGGCCT 1 cut(s) 134
TaqI TCGA 1 cut(s) 167
TasI AATT 1 cut(s) 104
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 3 cut(s) 46, 52, 267
TseFI GTSAC 2 cut(s) 70, 258
TseI GCWGC 4 cut(s) 94, 240, 301, 310
Tsp45I GTSAC 2 cut(s) 70, 258
TspDTI ATGAA 2 cut(s) 311, 403
TspRI CASTG 3 cut(s) 46, 52, 267
VpaK11BI GGWCC 2 cut(s) 4, 387
XagI CCTNNNNNAGG 1 cut(s) 139
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 71
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.