Rw3G020410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014496
Physical Location & Seq
Reverse (-)
23868105 .. 23869651
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020410.1

Sequence Viewer

Length: 471 bp
ATGGACCCTCCTACTTCTGTTCCTACTTCTGTTGCTGCTACTGCTACTGCTACTGCCTCTGCTAGTGTTCAACATGTGACCAAGAGGTCTTCAGATGAGCTGCTCAGGAAATTTGCTGATTCCTGCAATGAGGCCGAGGCCTCAGCGAGGAAGAAGGCGATCAGGGAGCTTTCGAAGCAAAGGAAAAAAAGCCGGAAAAGTGGTGAGTTTGATCAGGGTGAGAGTCCATCAAATGGCAAGAGTAGCAGCTTAGTGGAGAGGAGGTCACTGCTTCCTGTTGTTGCTGGGACTAAAAACAAGGGATTGCTGCTCAGGCAGCTTGGGGTTCATGGCAGGTCAAGGGATATCAGGAACAAGTCCCTTTTCGGTACCATTCACAAGACTTGGAGGAGGACCATAGAAGGGGCTTCAAAGGTTTTCATGGAGAAGCATTACAATAGGCACAGGCGTTTGATAAATGACATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

10.83

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42110
fragaria_vesca FvH4_6g22320
malus_domestica MD12G1057100.v1.1 MD14G1057700.v1.1
prunus_persica Prupe.7G077000_v2.0.a1
pyrus_communis pycom12g05100 pycom14g04680
rosa_chinensis RchiOBHm_Chr3g0479681
rosa_laevigata RLG00000023548
rosa_multiflora Rmu_sc0003755.1_g000005
rosa_roxburghii Rroxscaffold_6G00402070
rosa_rugosa Rorug03G0177400
rosa_samantha Rh3AG228100 Rh3BG261300 Rh3CG258400 Rh3DG254600
rosa_wichuraiana Rw3G020410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 233
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 3 cut(s) 147, 233, 402
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 71, 411
AluBI AGCT 4 cut(s) 100, 169, 249, 319
AluI AGCT 4 cut(s) 100, 169, 249, 319
AoxI GGCC 2 cut(s) 132, 138
ApeKI GCWGC 5 cut(s) 35, 100, 246, 307, 316
ApoI RAATTY 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 4, 393
AsuHPI GGTGA 2 cut(s) 215, 230
AsuII TTCGAA 1 cut(s) 173
AvaII GGWCC 2 cut(s) 4, 393
BanI GGYRCC 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 142
BbvI GCAGC 5 cut(s) 22, 87, 258, 294, 328
BccI CCATC 1 cut(s) 235
BclI TGATCA 1 cut(s) 211
BfaI CTAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 5 cut(s) 36, 101, 247, 308, 317
BlsI GCNGC 5 cut(s) 37, 102, 248, 309, 318
Bme18I GGWCC 2 cut(s) 4, 393
BmgT120I GGNCC 2 cut(s) 4, 393
BmiI GGNNCC 2 cut(s) 6, 370
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 3 cut(s) 104, 142, 311
Bpu14I TTCGAA 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 233, 402
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 3 cut(s) 147, 233, 402
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 3 cut(s) 118, 156, 325
BseRI GAGGAG 2 cut(s) 274, 403
BseXI GCAGC 5 cut(s) 22, 87, 258, 294, 328
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 2 cut(s) 134, 140
BshNI GGYRCC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 2 cut(s) 301, 343
BslI CCNNNNNNNGG 3 cut(s) 147, 233, 402
BsmFI GGGAC 2 cut(s) 301, 343
BsnI GGCC 2 cut(s) 134, 140
Bsp119I TTCGAA 1 cut(s) 173
Bsp143I GATC 2 cut(s) 159, 211
BspANI GGCC 2 cut(s) 134, 140
BspCNI CTCAG 3 cut(s) 117, 155, 324
BspLI GGNNCC 2 cut(s) 6, 370
BspMI ACCTGC 1 cut(s) 324
BspT104I TTCGAA 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 159, 211
BstBI TTCGAA 1 cut(s) 173
BstDEI CTNAG 4 cut(s) 104, 142, 250, 311
BstENI CCTNNNNNAGG 1 cut(s) 145
BstKTI GATC 2 cut(s) 162, 214
BstMBI GATC 2 cut(s) 159, 211
BstMWI GCNNNNNNNGC 5 cut(s) 41, 175, 243, 313, 316
BstNSI RCATGY 1 cut(s) 77
BstV1I GCAGC 5 cut(s) 22, 87, 258, 294, 328
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 134, 140
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
BveI ACCTGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 4, 393
Csp6I GTAC 1 cut(s) 369
CviAII CATG 3 cut(s) 74, 329, 421
CviJI RGCY 8 cut(s) 100, 134, 140, 169, 192, 249, 319, 407
CviKI_1 RGCY 8 cut(s) 100, 134, 140, 169, 192, 249, 319, 407
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 4 cut(s) 104, 142, 250, 311
DpnI GATC 2 cut(s) 161, 213
DpnII GATC 2 cut(s) 159, 211
DrdI GACNNNNNNGTC 1 cut(s) 85
DseDI GACNNNNNNGTC 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 140
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 4, 393
Eco57I CTGAAG 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoRV GATATC 1 cut(s) 346
FaeI CATG 3 cut(s) 77, 332, 424
FaiI YATR 4 cut(s) 75, 330, 398, 422
FaqI GGGAC 2 cut(s) 301, 343
FatI CATG 3 cut(s) 73, 328, 420
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 5 cut(s) 36, 101, 247, 308, 317
Fsp4HI GCNGC 5 cut(s) 36, 101, 247, 308, 317
FspBI CTAG 1 cut(s) 63
GluI GCNGC 5 cut(s) 36, 101, 247, 308, 317
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 2 cut(s) 134, 140
HapII CCGG 1 cut(s) 193
Hin1II CATG 3 cut(s) 77, 332, 424
HinfI GANTC 2 cut(s) 119, 223
HpaII CCGG 1 cut(s) 193
HphI GGTGA 2 cut(s) 215, 230
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 106, 349
HpyAV CCTTC 2 cut(s) 148, 395
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 175, 243, 313, 316
HpyF3I CTNAG 4 cut(s) 104, 142, 250, 311
Hsp92II CATG 3 cut(s) 77, 332, 424
KpnI GGTACC 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 159, 211
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 5 cut(s) 22, 87, 258, 294, 328
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 76, 264
MalI GATC 2 cut(s) 161, 213
MboI GATC 2 cut(s) 159, 211
MboII GAAGA 2 cut(s) 81, 163
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 232
MspI CCGG 1 cut(s) 193
MwoI GCNNNNNNNGC 5 cut(s) 41, 175, 243, 313, 316
NdeII GATC 2 cut(s) 159, 211
NlaIII CATG 3 cut(s) 77, 332, 424
NlaIV GGNNCC 2 cut(s) 6, 370
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 2 cut(s) 76, 264
NspI RCATGY 1 cut(s) 77
NspV TTCGAA 1 cut(s) 173
PceI AGGCCT 1 cut(s) 140
PciI ACATGT 1 cut(s) 73
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 5 cut(s) 37, 102, 248, 309, 318
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PscI ACATGT 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 6, 370
PspPI GGNCC 2 cut(s) 4, 393
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SatI GCNGC 5 cut(s) 36, 101, 247, 308, 317
Sau3AI GATC 2 cut(s) 159, 211
Sau96I GGNCC 2 cut(s) 4, 393
SchI GAGTC 1 cut(s) 232
SetI ASST 8 cut(s) 89, 102, 171, 251, 266, 321, 338, 417
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 2 cut(s) 4, 393
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 140
SspMI CTAG 1 cut(s) 63
StuI AGGCCT 1 cut(s) 140
TaqI TCGA 1 cut(s) 173
TasI AATT 1 cut(s) 110
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 2 cut(s) 76, 264
TseI GCWGC 5 cut(s) 35, 100, 246, 307, 316
Tsp45I GTSAC 2 cut(s) 76, 264
TspDTI ATGAA 2 cut(s) 317, 409
TspRI CASTG 1 cut(s) 273
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 4, 393
XagI CCTNNNNNAGG 1 cut(s) 145
XapI RAATTY 1 cut(s) 110
XceI RCATGY 1 cut(s) 77
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.