Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011150

Physical Location & Seq

Genomic Coordinates Reverse (-)

17798266 .. 17800072

Gene Structure 1807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G42770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGACGCATTGGGTGGTTGCGGCGGCGCTGGTGGTTTCTGGGGATGGAATGGCTTCGATCAACGGAGAAAGAAGAAGTCTTCCGGTGATAGAGGTAAGAAACGTAATTCTGGATCGTCGGATTCCGTCGATGTGAGCAGAGACGCCGGCGGTTATCGGTTTCCTTTGAAGCAAGCTGTGACGGCCGGAGCACTCACTTTCACCGGTGACACGATTGCTCAGCTATCAGGGAGATGGAAAAAGAGAACCGCTCTTAAACAATCATCTTCTGAGCTTGACGAGGGGGAATTGTGGAACATTTTCTCAGAACATGACTGGATTCGTGCGCTGCGGATGAGTTCTTACGGGTTTCTCTTGTATGGTCCTGGTTCTTATGCGTGGTACCAATTCCTTGATCATTCTTTGCCTAAACCAACTGCGACAAATCTAGTGCTTAAGGTTCTGCTTAACCAAGTAATCCTTGGTCCATCTGTGATTGCTGTTATATTTGCTTGGAACAACTTGTGGCTGGGAAAGCTCTCTGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGGATTTCGCTTCTGGGTTCCCGTTAGCATACTTAACTTTTGGGTAGTCCCGCTTCAAGCTCGAGTAGCGTTCATGTCCATGGGTTCTGTGTTTTGGAACTTCTACTTATCTTCAACTATGAGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

232

Amino Acids

25.92

Weight (kDa)

9.81

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpv17_PMP22	PF04117	173 - 227	8.6e-16	Mpv17 / PMP22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42770
fragaria_vesca	FvH4_6g27820 FvH4_6g27820
malus_domestica	MD09G1234300.v1.1 MD17G1263400.v1.1
prunus_persica	Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1
pyrus_communis	pycom17g26360
rosa_chinensis	RchiOBHm_Chr2g0131101
rosa_laevigata	RLG00000019167
rosa_multiflora	Rmu_sc0003629.1_g000065 Rmu_sc0034784.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113200
rosa_rugosa	Rorug02G0295000
rosa_samantha	Rh2AG347300 Rh2BG354800 Rh2CG333500 Rh2DG372700
rosa_wichuraiana	Rw2G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	251
AciI	CCGC	6 cut(s)	21, 24, 150, 249, 331, 620
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	383
AflII	CTTAAG	1 cut(s)	434
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	169, 626, 684
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	6 cut(s)	176, 223, 274, 517, 526, 629
AluI	AGCT	6 cut(s)	176, 223, 274, 517, 526, 629
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	328
AsiGI	ACCGGT	1 cut(s)	203
Asp700I	GAANNNNTTC	2 cut(s)	53, 299
Asp718I	GGTACC	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	29, 328
AspS9I	GGNCC	2 cut(s)	362, 464
AsuHPI	GGTGA	3 cut(s)	98, 193, 218
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	2 cut(s)	362, 464
BanI	GGYRCC	1 cut(s)	381
BarI	GAAGNNNNNNTAC	2 cut(s)	606, 638
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	3 cut(s)	39, 228, 475
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	428
BfoI	RGCGCY	1 cut(s)	30
BfrI	CTTAAG	1 cut(s)	434
BisI	GCNGC	3 cut(s)	22, 25, 329
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	3 cut(s)	23, 26, 330
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	2 cut(s)	362, 464
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	2 cut(s)	362, 464
BmiI	GGNNCC	2 cut(s)	383, 588
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	460, 648
BsaWI	WCCGGW	2 cut(s)	83, 203
Bse118I	RCCGGY	2 cut(s)	146, 203
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	460, 648
BseGI	GGATG	2 cut(s)	50, 339
BseMII	CTCAG	4 cut(s)	233, 261, 318, 513
BseNI	ACTGG	1 cut(s)	320
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	508
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	381
BshTI	ACCGGT	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	4 cut(s)	84, 147, 186, 204
BslFI	GGGAC	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	58, 113, 394
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	6 cut(s)	21, 24, 150, 249, 331, 620
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	4 cut(s)	232, 262, 317, 514
BspLI	GGNNCC	2 cut(s)	383, 588
BspPI	GGATC	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	381
BspTI	CTTAAG	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	251
BsrFI	RCCGGY	2 cut(s)	146, 203
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	2 cut(s)	146, 203
BssECI	CCNNGG	2 cut(s)	460, 648
BssMI	GATC	3 cut(s)	58, 113, 394
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	2 cut(s)	460, 648
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	148, 174
BstDEI	CTNAG	4 cut(s)	219, 270, 304, 522
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	50, 339
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	2 cut(s)	29, 328
BstKTI	GATC	3 cut(s)	61, 116, 397
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	3 cut(s)	58, 113, 394
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 514, 523, 635
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	72
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	50, 339
Cac8I	GCNNGC	2 cut(s)	148, 174
CfoI	GCGC	2 cut(s)	29, 328
Cfr10I	RCCGGY	2 cut(s)	146, 203
Cfr13I	GGNCC	2 cut(s)	362, 464
CseI	GACGC	2 cut(s)	14, 152
Csp6I	GTAC	1 cut(s)	382
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	3 cut(s)	311, 643, 649
CviJI	RGCY	9 cut(s)	54, 176, 185, 223, 274, 508, 517, 526, 629
CviKI_1	RGCY	9 cut(s)	54, 176, 185, 223, 274, 508, 517, 526, 629
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	4 cut(s)	219, 270, 304, 522
DpnI	GATC	3 cut(s)	60, 115, 396
DpnII	GATC	3 cut(s)	58, 113, 394
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	460, 648
Eco47I	GGWCC	2 cut(s)	362, 464
Eco52I	CGGCCG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	630
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	460, 648
ErhI	CCWWGG	2 cut(s)	460, 648
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	3 cut(s)	314, 646, 652
FaiI	YATR	9 cut(s)	312, 360, 375, 485, 570, 599, 644, 650, 689
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 537, 569
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	3 cut(s)	310, 642, 648
FauI	CCCGC	1 cut(s)	627
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	22, 25, 329
FokI	GGATG	2 cut(s)	57, 346
Fsp4HI	GCNGC	3 cut(s)	22, 25, 329
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	2 cut(s)	28, 327
GluI	GCNGC	3 cut(s)	22, 25, 329
GsaI	CCCAGC	1 cut(s)	512
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	4 cut(s)	84, 147, 186, 204
HgaI	GACGC	2 cut(s)	14, 152
HhaI	GCGC	2 cut(s)	29, 328
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	314, 646, 652
Hin6I	GCGC	2 cut(s)	27, 326
HinP1I	GCGC	2 cut(s)	27, 326
HinfI	GANTC	2 cut(s)	122, 319
HpaII	CCGG	4 cut(s)	84, 147, 186, 204
HphI	GGTGA	3 cut(s)	98, 193, 218
Hpy188I	TCNGA	5 cut(s)	121, 271, 307, 523, 543
Hpy188III	TCNNGA	1 cut(s)	111
Hpy99I	CGWCG	2 cut(s)	121, 131
HpyCH4IV	ACGT	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 514, 523, 635
HpyF3I	CTNAG	4 cut(s)	219, 270, 304, 522
HpySE526I	ACGT	1 cut(s)	103
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	314, 646, 652
HspAI	GCGC	2 cut(s)	27, 326
KpnI	GGTACC	1 cut(s)	385
KroI	GCCGGC	1 cut(s)	146
KroNI	GCCGGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	58, 113, 394
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	2 cut(s)	178, 206
MalI	GATC	3 cut(s)	60, 115, 396
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	3 cut(s)	58, 113, 394
MboII	GAAGA	5 cut(s)	72, 85, 258, 545, 672
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	106, 287, 386
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	86, 274
MreI	CGCCGGCG	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	146
MroXI	GAANNNNTTC	2 cut(s)	53, 299
MseI	TTAA	4 cut(s)	255, 435, 447, 603
MslI	CAYNNNNRTG	1 cut(s)	647
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	4 cut(s)	84, 147, 186, 204
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	4 cut(s)	182, 514, 523, 635
NaeI	GCCGGC	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	648
NdeII	GATC	3 cut(s)	58, 113, 394
NgoMIV	GCCGGC	1 cut(s)	146
NlaIII	CATG	3 cut(s)	314, 646, 652
NlaIV	GGNNCC	2 cut(s)	383, 588
NmuCI	GTSAC	2 cut(s)	178, 206
PaeR7I	CTCGAG	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	558
PdiI	GCCGGC	1 cut(s)	148
PdmI	GAANNNNTTC	2 cut(s)	53, 299
PfeI	GAWTC	2 cut(s)	122, 319
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	23, 26, 330
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	383, 588
PspPI	GGNCC	2 cut(s)	362, 464
PspXI	VCTCGAGB	1 cut(s)	630
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	255, 435, 447, 603
SatI	GCNGC	3 cut(s)	22, 25, 329
Sau3AI	GATC	3 cut(s)	58, 113, 394
Sau96I	GGNCC	2 cut(s)	362, 464
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	9 cut(s)	97, 106, 178, 225, 276, 441, 519, 528, 631
SfaNI	GCATC	1 cut(s)	538
Sfr274I	CTCGAG	1 cut(s)	630
SgrAI	CRCCGGYG	2 cut(s)	146, 203
SinI	GGWCC	2 cut(s)	362, 464
SlaI	CTCGAG	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	434, 630
SmoI	CTYRAG	2 cut(s)	434, 630
Sse9I	AATT	3 cut(s)	106, 287, 386
SsiI	CCGC	6 cut(s)	21, 24, 150, 249, 331, 620
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	460, 648
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	3 cut(s)	57, 129, 631
TasI	AATT	3 cut(s)	106, 287, 386
TauI	GCSGC	2 cut(s)	24, 27
TfiI	GAWTC	2 cut(s)	122, 319
Tru1I	TTAA	4 cut(s)	255, 435, 447, 603
Tru9I	TTAA	4 cut(s)	255, 435, 447, 603
TseFI	GTSAC	2 cut(s)	178, 206
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	2 cut(s)	178, 206
TspDTI	ATGAA	1 cut(s)	631
TspGWI	ACGGA	2 cut(s)	79, 115
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	362, 464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XhoI	CTCGAG	1 cut(s)	630
XmnI	GAANNNNTTC	2 cut(s)	53, 299
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.