Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

OG0011150

Physical Location & Seq

Genomic Coordinates Reverse (-)

277875 .. 281800

Gene Structure 3926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003629.1_g000065.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgacttcctatgggtttctgttgtacggccctggctcatatgcttggtaccagtatcttgatcatgctttgccagagaaaacagtcatgaaccttttgttgaaggttttattgaaccaagttgtgcttggtccatctgtgattgctgttgtttttgcatggaacaatttatggcaagggaaactctcacagcttccagataaataccgtaaagatgctcttcccacattactttatggatttaggttctggatacccgtcagtctattaaacttctgggttgtacctcttcaagcccgtgtagctttcatgtgtgtgggttcaatattctggaacttctgcttgtcttcaacaatgagcaaaagaaatttccagaagcaacttcttaatgcagttggcgtcaagtttagagatgattgtaaaaccttggacctagactggaatgagtacaagcagaaagatactgatattgccagtggaattgttaatgacatgttatattcaaagctattgtcaccccctcaacaaatattggagtacaagatcatgtctattctaaaaccactggcccaagtgcaacttccagtggattggaatgagatacataaacgtcacccagtacaacgaatcagcccatatactgattggaacgaagacatgatgaacagaagaaccaactctaacagttcagccacatttaatccgagacttgcctaccctcctccttctcttcctcctcctcctccgcctcctcctcgtacccatgataatccatatgactacttttttccttcttcttctccaccttccctttcttctcctcctccgccctccctttcttctcctcttaaccatcttactccatatgactactttttttcaattgatgatgatgatgttaatgatcactggcatttcgaggaacctgttcagcccctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

313

Amino Acids

36.12

Weight (kDa)

6.37

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42770
fragaria_vesca	FvH4_6g27820 FvH4_6g27820
malus_domestica	MD09G1234300.v1.1 MD17G1263400.v1.1
prunus_persica	Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1
pyrus_communis	pycom17g26360
rosa_chinensis	RchiOBHm_Chr2g0131101
rosa_laevigata	RLG00000019167
rosa_multiflora	Rmu_sc0003629.1_g000065 Rmu_sc0034784.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113200
rosa_rugosa	Rorug02G0295000
rosa_samantha	Rh2AG347300 Rh2BG354800 Rh2CG333500 Rh2DG372700
rosa_wichuraiana	Rw2G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	48
AciI	CCGC	2 cut(s)	746, 827
AcsI	RAATTY	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	7 cut(s)	26, 50, 285, 449, 539, 621, 760
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	7 cut(s)	103, 115, 293, 324, 351, 504, 882
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	3 cut(s)	193, 305, 508
AluI	AGCT	3 cut(s)	193, 305, 508
Alw26I	GTCTC	1 cut(s)	700
AlwNI	CAGNNNCTG	1 cut(s)	937
AoxI	GGCC	2 cut(s)	28, 567
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp700I	GAANNNNTTC	1 cut(s)	927
Asp718I	GGTACC	1 cut(s)	48
AspS9I	GGNCC	4 cut(s)	29, 131, 430, 568
AsuHPI	GGTGA	2 cut(s)	507, 605
AvaII	GGWCC	2 cut(s)	131, 430
BanI	GGYRCC	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	339, 660
BccI	CCATC	2 cut(s)	142, 861
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	246
BclI	TGATCA	2 cut(s)	61, 904
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	2 cut(s)	131, 430
BmgT120I	GGNCC	4 cut(s)	29, 131, 430, 568
BmiI	GGNNCC	2 cut(s)	50, 924
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	611
BmsI	GCATC	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	611
BpiI	GAAGAC	2 cut(s)	339, 660
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	31, 426
Bse1I	ACTGG	7 cut(s)	52, 443, 474, 570, 584, 617, 914
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	31, 426
BseNI	ACTGG	7 cut(s)	52, 443, 474, 570, 584, 617, 914
BseRI	GAGGAG	9 cut(s)	711, 726, 729, 732, 741, 744, 810, 813, 834
BshFI	GGCC	2 cut(s)	30, 569
BshNI	GGYRCC	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	700
BsnI	GGCC	2 cut(s)	30, 569
Bsp143I	GATC	3 cut(s)	61, 543, 904
BspACI	CCGC	2 cut(s)	746, 827
BspANI	GGCC	2 cut(s)	30, 569
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	50, 924
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	48
BsrI	ACTGG	7 cut(s)	52, 443, 474, 570, 584, 617, 914
BssECI	CCNNGG	2 cut(s)	31, 426
BssMI	GATC	3 cut(s)	61, 543, 904
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	85, 209, 686
Bst6I	CTCTTC	3 cut(s)	225, 294, 735
BstACI	GRCGYC	1 cut(s)	399
BstKTI	GATC	3 cut(s)	64, 546, 907
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	3 cut(s)	61, 543, 904
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	339, 660
BstXI	CCANNNNNNTGG	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	30, 569
BtsIMutI	CAGTG	4 cut(s)	481, 563, 591, 907
CaiI	CAGNNNCTG	1 cut(s)	937
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	4 cut(s)	29, 131, 430, 568
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	7 cut(s)	25, 49, 284, 448, 538, 620, 759
CviAII	CATG	8 cut(s)	65, 88, 159, 310, 493, 547, 658, 764
CviQI	GTAC	7 cut(s)	25, 49, 284, 448, 538, 620, 759
DpnI	GATC	3 cut(s)	63, 545, 906
DpnII	GATC	3 cut(s)	61, 543, 904
Eam1104I	CTCTTC	3 cut(s)	225, 294, 735
EarI	CTCTTC	3 cut(s)	225, 294, 735
EciI	GGCGGA	2 cut(s)	735, 816
Eco130I	CCWWGG	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	131, 430
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	8 cut(s)	68, 91, 162, 313, 496, 550, 661, 767
FalI	AAGNNNNNCTT	6 cut(s)	111, 143, 204, 236, 564, 596
FatI	CATG	8 cut(s)	64, 87, 158, 309, 492, 546, 657, 763
FauNDI	CATATG	3 cut(s)	40, 775, 865
FbaI	TGATCA	2 cut(s)	61, 904
FspBI	CTAG	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	30, 569
HgaI	GACGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	8 cut(s)	68, 91, 162, 313, 496, 550, 661, 767
HinfI	GANTC	1 cut(s)	627
HphI	GGTGA	2 cut(s)	507, 605
Hpy188I	TCNGA	1 cut(s)	705
Hpy188III	TCNNGA	6 cut(s)	59, 88, 197, 250, 331, 373
HpyAV	CCTTC	4 cut(s)	97, 735, 801, 816
HpyCH4III	ACNGT	3 cut(s)	85, 209, 686
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	3 cut(s)	158, 392, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpySE526I	ACGT	1 cut(s)	610
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	8 cut(s)	68, 91, 162, 313, 496, 550, 661, 767
KpnI	GGTACC	1 cut(s)	52
Ksp22I	TGATCA	2 cut(s)	61, 904
Kzo9I	GATC	3 cut(s)	61, 543, 904
LguI	GCTCTTC	1 cut(s)	225
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	2 cut(s)	513, 611
MalI	GATC	3 cut(s)	63, 545, 906
MboI	GATC	3 cut(s)	61, 543, 904
MfeI	CAATTG	1 cut(s)	882
MluCI	AATT	4 cut(s)	166, 367, 480, 882
MroXI	GAANNNNTTC	1 cut(s)	927
MseI	TTAA	6 cut(s)	269, 387, 486, 699, 849, 900
MslI	CAYNNNNRTG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	3 cut(s)	40, 775, 865
NdeII	GATC	3 cut(s)	61, 543, 904
NlaIII	CATG	8 cut(s)	68, 91, 162, 313, 496, 550, 661, 767
NlaIV	GGNNCC	2 cut(s)	50, 924
NmuCI	GTSAC	2 cut(s)	513, 611
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	87
PciI	ACATGT	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	1 cut(s)	627
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	50, 924
PspPI	GGNCC	4 cut(s)	29, 131, 430, 568
PstNI	CAGNNNCTG	1 cut(s)	937
RsaI	GTAC	7 cut(s)	26, 50, 285, 449, 539, 621, 760
RsaNI	GTAC	7 cut(s)	25, 49, 284, 448, 538, 620, 759
RseI	CAYNNNNRTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	6 cut(s)	269, 387, 486, 699, 849, 900
Sau3AI	GATC	3 cut(s)	61, 543, 904
Sau96I	GGNCC	4 cut(s)	29, 131, 430, 568
ScrFI	CCNGG	1 cut(s)	33
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	2 cut(s)	131, 430
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	166, 367, 480, 882
SsiI	CCGC	2 cut(s)	746, 827
SspI	AATATT	2 cut(s)	327, 531
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	85, 209, 686
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	918
TasI	AATT	4 cut(s)	166, 367, 480, 882
TatI	WGTACW	3 cut(s)	447, 537, 619
TfiI	GAWTC	1 cut(s)	627
Tru1I	TTAA	6 cut(s)	269, 387, 486, 699, 849, 900
Tru9I	TTAA	6 cut(s)	269, 387, 486, 699, 849, 900
TscAI	CASTG	4 cut(s)	481, 570, 591, 914
TseFI	GTSAC	2 cut(s)	513, 611
Tsp45I	GTSAC	2 cut(s)	513, 611
TspDTI	ATGAA	3 cut(s)	104, 298, 677
TspRI	CASTG	4 cut(s)	481, 570, 591, 914
VpaK11BI	GGWCC	2 cut(s)	131, 430
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 642
XmnI	GAANNNNTTC	1 cut(s)	927
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.