Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011150

Physical Location & Seq

Genomic Coordinates Forward (+)

24654173 .. 24660923

Gene Structure 6751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAATGCTCTTGGCGGTGGCGGCCATGGCGGCCTCTGGGGTTGGAACTACTCATCACCCAGAAAACCGAAGCAGCAAAGAAAACGCCCATTTGATTCCAAATCCCAGTCTTCCTCCAAATCTGTGGACGCAACCGGAAGAGCAGGTCACTGGTTTCCCTTAAAGCAAGCCGCCACGGCTGGCACACTGGCTCTGACGGGAGATACAATTGCTCAGCTCACACAGCGCTGGAGAAAAGCAGGCGCGGAAGACCAACAGGATGTAACACATGCTCTCCTCTCACACCATGATTGGCTTCGTGCACTGCGGATGACTTCCTATGGGTTTCTTTTGTACGGCCCTGGTTCTTATGCTTGGTACCAGTATCTCGATCATTCTTTGCCTGCGAAAACTGTAGAGAACCTACTGCTGAAGGTTTTGTTGAATCAAATTGTGCTTGGTCCATGTGTGATTGCTGTTGTTTTTGCGTGGAACAATTTATGGCAAGGGAAACTCTCACAGCTTCCAGAGAAGTATCGAAGAGATGCTCTTCCCACCTTACTTTATGGATTTAGGTTCTGGATACCTGTCAGTTTATTGAATTTCTGGGTGGTACCTCTTCAAACTCGTGTAGCTTTCATGTCCGTGGGTTCAATTTTCTGGAACTTCTGCTTGTCTTCAACTATTAGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

225

Amino Acids

25.23

Weight (kDa)

10.01

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42770
fragaria_vesca	FvH4_6g27820 FvH4_6g27820
malus_domestica	MD09G1234300.v1.1 MD17G1263400.v1.1
prunus_persica	Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1
pyrus_communis	pycom17g26360
rosa_chinensis	RchiOBHm_Chr2g0131101
rosa_laevigata	RLG00000019167
rosa_multiflora	Rmu_sc0003629.1_g000065 Rmu_sc0034784.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113200
rosa_rugosa	Rorug02G0295000
rosa_samantha	Rh2AG347300 Rh2BG354800 Rh2CG333500 Rh2DG372700
rosa_wichuraiana	Rw2G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
Acc65I	GGTACC	2 cut(s)	357, 592
AccB1I	GGYRCC	2 cut(s)	357, 592
AccII	CGCG	1 cut(s)	245
AciI	CCGC	6 cut(s)	15, 21, 30, 171, 245, 307
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	3 cut(s)	335, 359, 594
AfeI	AGCGCT	1 cut(s)	227
AgsI	TTSAA	5 cut(s)	424, 580, 602, 633, 660
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	3 cut(s)	217, 502, 614
AluI	AGCT	3 cut(s)	217, 502, 614
Alw21I	GWGCWC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	300
Aor51HI	AGCGCT	1 cut(s)	227
AoxI	GGCC	3 cut(s)	22, 31, 337
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	580
Asp718I	GGTACC	2 cut(s)	357, 592
AspLEI	GCGC	2 cut(s)	228, 245
AspS9I	GGNCC	2 cut(s)	338, 440
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	304
BanI	GGYRCC	2 cut(s)	357, 592
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	3 cut(s)	102, 255, 648
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	85
BceAI	ACGGC	2 cut(s)	192, 352
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	555
BglI	GCCNNNNNGGC	2 cut(s)	30, 176
BisI	GCNGC	4 cut(s)	22, 31, 74, 171
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	4 cut(s)	23, 32, 75, 172
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	338, 440
BmiI	GGNNCC	2 cut(s)	359, 594
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	3 cut(s)	102, 255, 648
BpmI	CTGGAG	1 cut(s)	250
Bpu1102I	GCTNAGC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	25, 174, 340, 624
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse1I	ACTGG	4 cut(s)	106, 155, 192, 361
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	4 cut(s)	25, 174, 340, 624
BseGI	GGATG	2 cut(s)	265, 315
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	4 cut(s)	106, 155, 192, 361
BseRI	GAGGAG	1 cut(s)	266
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	24, 33, 339
BshNI	GGYRCC	2 cut(s)	357, 592
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	24, 33, 339
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	370
Bsp1720I	GCTNAGC	1 cut(s)	213
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	6 cut(s)	15, 21, 30, 171, 245, 307
BspANI	GGCC	3 cut(s)	24, 33, 339
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	359, 594
BspMI	ACCTGC	1 cut(s)	134
BspQI	GCTCTTC	2 cut(s)	133, 534
BspT107I	GGYRCC	2 cut(s)	357, 592
BsrI	ACTGG	4 cut(s)	106, 155, 192, 361
BssECI	CCNNGG	4 cut(s)	25, 174, 340, 624
BssMI	GATC	1 cut(s)	370
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	4 cut(s)	133, 514, 534, 603
BstC8I	GCNNGC	4 cut(s)	168, 181, 241, 384
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	3 cut(s)	25, 174, 624
BstF5I	GGATG	2 cut(s)	265, 315
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	2 cut(s)	228, 245
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 27, 30, 176, 223
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	304
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	3 cut(s)	102, 255, 648
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	24, 33, 339
BtgI	CCRYGG	3 cut(s)	25, 174, 624
BtsCI	GGATG	2 cut(s)	265, 315
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	3 cut(s)	148, 185, 302
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	4 cut(s)	168, 181, 241, 384
CfoI	GCGC	2 cut(s)	228, 245
Cfr13I	GGNCC	2 cut(s)	338, 440
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	334, 358, 593
CviAII	CATG	5 cut(s)	26, 269, 287, 444, 619
CviQI	GTAC	3 cut(s)	334, 358, 593
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	4 cut(s)	133, 514, 534, 603
EarI	CTCTTC	4 cut(s)	133, 514, 534, 603
Eco130I	CCWWGG	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	440
Eco47III	AGCGCT	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	5 cut(s)	29, 272, 290, 447, 622
FaiI	YATR	9 cut(s)	27, 270, 288, 321, 351, 445, 481, 546, 620
FatI	CATG	5 cut(s)	25, 268, 286, 443, 618
Fnu4HI	GCNGC	4 cut(s)	22, 31, 74, 171
FokI	GGATG	2 cut(s)	272, 322
Fsp4HI	GCNGC	4 cut(s)	22, 31, 74, 171
GlaI	GCGC	2 cut(s)	227, 244
GluI	GCNGC	4 cut(s)	22, 31, 74, 171
GsuI	CTGGAG	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	24, 33, 339
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	228, 245
Hin1II	CATG	5 cut(s)	29, 272, 290, 447, 622
Hin6I	GCGC	2 cut(s)	226, 243
HinP1I	GCGC	2 cut(s)	226, 243
HinfI	GANTC	2 cut(s)	95, 424
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	127, 302
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	4 cut(s)	368, 506, 559, 640
Hpy8I	GTNNAC	2 cut(s)	127, 302
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 27, 30, 176, 223
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	29, 272, 290, 447, 622
HspAI	GCGC	2 cut(s)	226, 243
KpnI	GGTACC	2 cut(s)	361, 596
Kzo9I	GATC	1 cut(s)	370
LguI	GCTCTTC	2 cut(s)	133, 534
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	146, 262
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	7 cut(s)	102, 150, 260, 521, 531, 590, 648
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	5 cut(s)	207, 429, 475, 580, 633
MmeI	TCCRAC	1 cut(s)	23
MnlI	CCTC	4 cut(s)	44, 124, 287, 606
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	623
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	5 cut(s)	21, 27, 30, 176, 223
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	5 cut(s)	29, 272, 290, 447, 622
NlaIV	GGNNCC	2 cut(s)	359, 594
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	272
PciSI	GCTCTTC	2 cut(s)	133, 534
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	95, 424
PkrI	GCNGC	4 cut(s)	23, 32, 75, 172
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	2 cut(s)	359, 594
PspPI	GGNCC	2 cut(s)	338, 440
RsaI	GTAC	3 cut(s)	335, 359, 594
RsaNI	GTAC	3 cut(s)	334, 358, 593
RseI	CAYNNNNRTG	1 cut(s)	623
SapI	GCTCTTC	2 cut(s)	133, 534
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	4 cut(s)	22, 31, 74, 171
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	2 cut(s)	338, 440
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	393
SfiI	GGCCNNNNNGGCC	1 cut(s)	30
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	623
Sse9I	AATT	5 cut(s)	207, 429, 475, 580, 633
SsiI	CCGC	6 cut(s)	15, 21, 30, 171, 245, 307
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	369, 517
TasI	AATT	5 cut(s)	207, 429, 475, 580, 633
TauI	GCSGC	3 cut(s)	24, 33, 173
TfiI	GAWTC	2 cut(s)	95, 424
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	3 cut(s)	155, 192, 309
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	17, 607
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	3 cut(s)	155, 192, 309
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.