Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011150

Physical Location & Seq

Genomic Coordinates Forward (+)

9404753 .. 9407846

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G112500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAATGTTCTTGGCGGTGGAGGCCATGGCGGGCTTTGGGGTTGGAACCCTTCACCGAGAAAACCGAAACAACAAAGAAAAAGGCGATTTGATTCCAAATCCCAGTCCTCCAATTCTGTGGAGGCATCCGGAGGAGCCGGTCACTGGTTCCCCTTAAAGCAAGCCGTCACAGCTGGCTCACTGGTTCTAACAGGAGACACAATTGCTCAGCTCAGCCAGCGGTGGACAAAAGCCAAGGCTCTTAACCAACAGGATGGAAAAGATGCTCTCCTCTCAGATCATGATTGGCTTCGTGCACTTCGGATGACTTCCTATGGGTTTCTTTTATACGGCCCCGGTTCCTATGCTTGGTACCAGTTTCTTGATCATTCTTTACCTGCGACAACGGTAGGGAACCTACTACTGAAGGTTTTATTAAACCAAATTGTGCTTGGTCCAACTGTGATTGCTGTTGTTTTTGCATGGAACAATTTATGGCAAAGGAAACTCTCACAGCTCCCGGACAAGTACCGGAGAGATGCTTTTCCCACTTTACTTTATGGATTTAGGTTCTGGATACCTGTCAGTTTATTGAATTTTTGGGTGATACCTCTTCAAGCCCGTGTAGCTTTCATGTCTGTGGGCTCAATATTCTGGAACTTTTGTTTGTCTTCAACTTTGAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

223

Amino Acids

24.91

Weight (kDa)

10.28

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42770
fragaria_vesca	FvH4_6g27820 FvH4_6g27820
malus_domestica	MD09G1234300.v1.1 MD17G1263400.v1.1
prunus_persica	Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1
pyrus_communis	pycom17g26360
rosa_chinensis	RchiOBHm_Chr2g0131101
rosa_laevigata	RLG00000019167
rosa_multiflora	Rmu_sc0003629.1_g000065 Rmu_sc0034784.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113200
rosa_rugosa	Rorug02G0295000
rosa_samantha	Rh2AG347300 Rh2BG354800 Rh2CG333500 Rh2DG372700
rosa_wichuraiana	Rw2G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	3 cut(s)	15, 30, 220
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	353, 509
AfiI	CCNNNNNNNGG	2 cut(s)	144, 348
AgsI	TTSAA	3 cut(s)	574, 596, 654
AluBI	AGCT	4 cut(s)	173, 211, 496, 608
AluI	AGCT	4 cut(s)	173, 211, 496, 608
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	189
Alw44I	GTGCAC	1 cut(s)	294
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	2 cut(s)	22, 331
ApaLI	GTGCAC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	574
Asp718I	GGTACC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	332, 434
AsuC2I	CCSGG	2 cut(s)	336, 500
AsuHPI	GGTGA	2 cut(s)	45, 595
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	2 cut(s)	149, 346
BciVI	GTATCC	1 cut(s)	549
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	2 cut(s)	336, 500
BcoDI	GTCTC	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	549
BlpI	GCTNAGC	2 cut(s)	207, 212
Bme1390I	CCNGG	2 cut(s)	336, 500
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	332, 434
BmiI	GGNNCC	7 cut(s)	47, 136, 149, 334, 340, 353, 395
BmrFI	CCNGG	2 cut(s)	336, 500
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	3 cut(s)	134, 253, 508
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	642
Bpu1102I	GCTNAGC	2 cut(s)	207, 212
BpuMI	CCSGG	2 cut(s)	336, 500
BsaJI	CCNNGG	3 cut(s)	25, 234, 334
BsaWI	WCCGGW	2 cut(s)	128, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 348
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	4 cut(s)	103, 149, 186, 355
BseAI	TCCGGA	1 cut(s)	128
BseDI	CCNNGG	3 cut(s)	25, 234, 334
BseGI	GGATG	3 cut(s)	125, 259, 309
BseLI	CCNNNNNNNGG	2 cut(s)	144, 348
BseMII	CTCAG	3 cut(s)	221, 226, 288
BseNI	ACTGG	4 cut(s)	103, 149, 186, 355
BseRI	GAGGAG	2 cut(s)	147, 260
BseSI	GKGCMC	1 cut(s)	298
BshFI	GGCC	2 cut(s)	24, 333
BshNI	GGYRCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	5 cut(s)	129, 138, 336, 500, 511
BslI	CCNNNNNNNGG	2 cut(s)	144, 348
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	24, 333
Bsp1286I	GDGCHC	2 cut(s)	298, 626
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	277, 364
Bsp1720I	GCTNAGC	2 cut(s)	207, 212
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	3 cut(s)	15, 30, 220
BspANI	GGCC	2 cut(s)	24, 333
BspCNI	CTCAG	3 cut(s)	220, 225, 287
BspEI	TCCGGA	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	7 cut(s)	47, 136, 149, 334, 340, 353, 395
BspMI	ACCTGC	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	4 cut(s)	103, 149, 186, 355
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	25, 234, 334
BssMI	GATC	2 cut(s)	277, 364
BssT1I	CCWWGG	2 cut(s)	25, 234
Bst4CI	ACNGT	2 cut(s)	388, 442
Bst6I	CTCTTC	1 cut(s)	597
BstC8I	GCNNGC	4 cut(s)	32, 162, 175, 218
BstDEI	CTNAG	3 cut(s)	207, 212, 274
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	3 cut(s)	125, 259, 309
BstKTI	GATC	2 cut(s)	280, 367
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	277, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 170, 217, 605
BstSCI	CCNGG	2 cut(s)	334, 498
BstSLI	GKGCMC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	642
BstXI	CCANNNNNNTGG	2 cut(s)	118, 254
BsuI	GTATCC	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	24, 333
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	125, 259, 309
BtsIMutI	CAGTG	2 cut(s)	142, 179
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	4 cut(s)	32, 162, 175, 218
CciI	TCATGA	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	332, 434
Csp6I	GTAC	2 cut(s)	352, 508
CviAII	CATG	4 cut(s)	26, 281, 462, 613
CviQI	GTAC	2 cut(s)	352, 508
DdeI	CTNAG	3 cut(s)	207, 212, 274
DpnI	GATC	2 cut(s)	279, 366
DpnII	GATC	2 cut(s)	277, 364
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco130I	CCWWGG	2 cut(s)	25, 234
Eco24I	GRGCYC	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	25, 234
EcoT38I	GRGCYC	1 cut(s)	626
ErhI	CCWWGG	2 cut(s)	25, 234
FaeI	CATG	4 cut(s)	29, 284, 465, 616
FaiI	YATR	9 cut(s)	27, 282, 315, 328, 345, 463, 475, 540, 614
FatI	CATG	4 cut(s)	25, 280, 461, 612
FauI	CCCGC	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	364
FokI	GGATG	3 cut(s)	112, 266, 316
FriOI	GRGCYC	1 cut(s)	626
HaeIII	GGCC	2 cut(s)	24, 333
HapII	CCGG	5 cut(s)	129, 138, 336, 500, 511
Hin1II	CATG	4 cut(s)	29, 284, 465, 616
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	5 cut(s)	129, 138, 336, 500, 511
HphI	GGTGA	2 cut(s)	45, 595
Hpy166II	GTNNAC	2 cut(s)	225, 296
Hpy188I	TCNGA	2 cut(s)	277, 303
Hpy188III	TCNNGA	5 cut(s)	129, 281, 362, 553, 634
Hpy8I	GTNNAC	2 cut(s)	225, 296
HpyAV	CCTTC	2 cut(s)	60, 400
HpyCH4III	ACNGT	2 cut(s)	388, 442
HpyCH4V	TGCA	2 cut(s)	296, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 170, 217, 605
HpyF3I	CTNAG	3 cut(s)	207, 212, 274
Hsp92II	CATG	4 cut(s)	29, 284, 465, 616
Kpn2I	TCCGGA	1 cut(s)	128
KpnI	GGTACC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	277, 364
LmnI	GCTCC	2 cut(s)	134, 501
LweI	GCATC	3 cut(s)	134, 253, 508
MaeIII	GTNAC	2 cut(s)	140, 166
MalI	GATC	2 cut(s)	279, 366
MboI	GATC	2 cut(s)	277, 364
MboII	GAAGA	2 cut(s)	584, 642
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	298, 626
MluCI	AATT	5 cut(s)	112, 201, 423, 469, 574
MmeI	TCCRAC	2 cut(s)	23, 461
MnlI	CCTC	6 cut(s)	14, 115, 118, 125, 281, 600
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	3 cut(s)	155, 243, 416
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	2 cut(s)	173, 220
MspI	CCGG	5 cut(s)	129, 138, 336, 500, 511
MspR9I	CCNGG	2 cut(s)	336, 500
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	21, 170, 217, 605
NciI	CCSGG	2 cut(s)	336, 500
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	277, 364
NlaIII	CATG	4 cut(s)	29, 284, 465, 616
NlaIV	GGNNCC	7 cut(s)	47, 136, 149, 334, 340, 353, 395
NmuCI	GTSAC	2 cut(s)	140, 166
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	498
PspN4I	GGNNCC	7 cut(s)	47, 136, 149, 334, 340, 353, 395
PspPI	GGNCC	2 cut(s)	332, 434
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	353, 509
RsaNI	GTAC	2 cut(s)	352, 508
RseI	CAYNNNNRTG	1 cut(s)	617
SaqAI	TTAA	3 cut(s)	155, 243, 416
Sau3AI	GATC	2 cut(s)	277, 364
Sau96I	GGNCC	2 cut(s)	332, 434
ScrFI	CCNGG	2 cut(s)	336, 500
SduI	GDGCHC	2 cut(s)	298, 626
SfaNI	GCATC	3 cut(s)	134, 253, 508
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	617
Sse9I	AATT	5 cut(s)	112, 201, 423, 469, 574
SsiI	CCGC	3 cut(s)	15, 30, 220
SspI	AATATT	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	334, 498
StyI	CCWWGG	2 cut(s)	25, 234
TaaI	ACNGT	2 cut(s)	388, 442
TasI	AATT	5 cut(s)	112, 201, 423, 469, 574
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	155, 243, 416
Tru9I	TTAA	3 cut(s)	155, 243, 416
TscAI	CASTG	2 cut(s)	149, 186
TseFI	GTSAC	2 cut(s)	140, 166
Tsp45I	GTSAC	2 cut(s)	140, 166
TspDTI	ATGAA	2 cut(s)	17, 601
TspRI	CASTG	2 cut(s)	149, 186
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	1 cut(s)	574
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.